RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 SART3Q15020 963 aaKnown RBP23.45■■□□□ 1.35
USP39-204ENST00000409766 CCDC144CPQ8IYA2 1237 aa23.45■■□□□ 1.35
USP39-204ENST00000409766 MINDY4BA8MYZ0 360 aa23.45■■□□□ 1.34
USP39-204ENST00000409766 PHKBQ93100 1093 aa23.45■■□□□ 1.34
USP39-204ENST00000409766 ALG1Q9BT22 464 aa23.45■■□□□ 1.34
USP39-204ENST00000409766 RANBP6O60518 1105 aaKnown RBP23.44■■□□□ 1.34
USP39-204ENST00000409766 KIF23Q02241 960 aaPredicted RBP23.44■■□□□ 1.34
USP39-204ENST00000409766 CCDC88AQ3V6T2 1871 aa23.44■■□□□ 1.34
USP39-204ENST00000409766 STK11IPQ8N1F8 1099 aa23.44■■□□□ 1.34
USP39-204ENST00000409766 AIFM3Q96NN9 605 aa23.44■■□□□ 1.34
USP39-204ENST00000409766 ZKSCAN3Q9BRR0 538 aa23.44■■□□□ 1.34
USP39-204ENST00000409766 MAST2Q6P0Q8 1798 aa23.44■■□□□ 1.34
USP39-204ENST00000409766 POLR3DP05423 398 aaPredicted RBP23.43■■□□□ 1.34
USP39-204ENST00000409766 IARSP41252 1262 aaKnown RBP23.43■■□□□ 1.34
USP39-204ENST00000409766 WTAPQ15007 396 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 PRR5LQ6MZQ0 368 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 KRT27Q7Z3Y8 459 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 TMTC2Q8N394 836 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 KIF28PB7ZC32 967 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 GYS1P13807 737 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 SLC27A3Q5K4L6 730 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 MYSM1Q5VVJ2 828 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 SYNE3Q6ZMZ3 975 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 CCAR1Q8IX12 1150 aaKnown RBP23.43■■□□□ 1.34
USP39-204ENST00000409766 CKAP2LQ8IYA6 745 aa23.43■■□□□ 1.34
USP39-204ENST00000409766 ERICH2A1L162 156 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 SMIM22K7EJ46 135 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 PRDX5P30044 214 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 TMED8Q6PL24 325 aaPredicted RBP23.42■■□□□ 1.34
USP39-204ENST00000409766 ZSCAN30Q86W11 494 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 POLR3EQ9NVU0 708 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 LEMD3Q9Y2U8 911 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 STK36Q9NRP7 1315 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 ME1P48163 572 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 TYRO3Q06418 890 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 CHAF1AQ13111 956 aaPredicted RBP23.42■■□□□ 1.34
USP39-204ENST00000409766 LINC00301Q8NCQ3 95 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 ESR2Q92731 530 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 GOLPH3LQ9H4A5 285 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 ANKIB1Q9P2G1 1089 aa23.42■■□□□ 1.34
USP39-204ENST00000409766 MYH2Q9UKX2 1941 aa23.41■■□□□ 1.34
USP39-204ENST00000409766 DUOX1Q9NRD9 1551 aa23.41■■□□□ 1.34
USP39-204ENST00000409766 IFNAR1P17181 557 aa23.41■■□□□ 1.34
USP39-204ENST00000409766 SLC51AQ86UW1 340 aa23.41■■□□□ 1.34
USP39-204ENST00000409766 CLIC4Q9Y696 253 aa23.41■■□□□ 1.34
USP39-204ENST00000409766 MRVI1Q9Y6F6 885 aa23.41■■□□□ 1.34
USP39-204ENST00000409766 YEATS4O95619 227 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 FGRP09769 529 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 RCAN1P53805 252 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 SNW1Q13573 536 aaKnown RBP23.4■■□□□ 1.34
USP39-204ENST00000409766 KRT40Q6A162 431 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 USP25Q9UHP3 1055 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 PCDHA7Q9UN72 937 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 FMNL1O95466 1100 aaPredicted RBP23.4■■□□□ 1.34
USP39-204ENST00000409766 SEC23AQ15436 765 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 CRY2Q49AN0 593 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 CTR9Q6PD62 1173 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 ENGASEQ8NFI3 743 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 UBAC1Q9BSL1 405 aa23.4■■□□□ 1.34
USP39-204ENST00000409766 KIAA1551Q9HCM1 1747 aa23.39■■□□□ 1.34
USP39-204ENST00000409766 XDHP47989 1333 aa23.39■■□□□ 1.34
USP39-204ENST00000409766 CYP2D7A0A087X1C5 515 aa23.39■■□□□ 1.34
USP39-204ENST00000409766 PCP11498 1178 aaKnown RBP23.39■■□□□ 1.34
USP39-204ENST00000409766 SSRP1Q08945 709 aaKnown RBP23.39■■□□□ 1.34
USP39-204ENST00000409766 ZNF772Q68DY9 489 aaPredicted RBP23.39■■□□□ 1.34
USP39-204ENST00000409766 ADALQ6DHV7 355 aa23.39■■□□□ 1.34
USP39-204ENST00000409766 AATFQ9NY61 560 aaKnown RBP eCLIP23.39■■□□□ 1.34
USP39-204ENST00000409766 RTN1Q16799 776 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 KCNG4Q8TDN1 519 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 SLC26A6Q9BXS9 759 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 SERPINB2P05120 415 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 RBM6P78332 1123 aaKnown RBP23.38■■□□□ 1.33
USP39-204ENST00000409766 FAM160A1Q05DH4 1040 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 CCDC73Q6ZRK6 1079 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 ZNF654Q8IZM8 581 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 FAM200AQ8TCP9 573 aa23.38■■□□□ 1.33
USP39-204ENST00000409766 CRNKL1Q9BZJ0 848 aaKnown RBP23.38■■□□□ 1.33
USP39-204ENST00000409766 NOL7Q9UMY1 257 aaKnown RBP23.38■■□□□ 1.33
USP39-204ENST00000409766 TNKSO95271 1327 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 A0A1W2PQ27 194 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 A0A1W2PQ64 194 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 A0A1W2PQD8 194 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 USP17L12C9JPN9 530 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 USP17L21D6R901 530 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 TRIM37O94972 964 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 STK38Q15208 465 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 SPTY2D1Q68D10 685 aaPredicted RBP23.37■■□□□ 1.33
USP39-204ENST00000409766 TDRD7Q8NHU6 1098 aaKnown RBP23.37■■□□□ 1.33
USP39-204ENST00000409766 RPGRQ92834 1020 aaKnown RBP23.37■■□□□ 1.33
USP39-204ENST00000409766 DCP1AQ9NPI6 582 aaPredicted RBP23.37■■□□□ 1.33
USP39-204ENST00000409766 JAG2Q9Y219 1238 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 LAMB1P07942 1786 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 UBE2Q2LH0YL09 131 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 C15orf52Q6ZUT6 534 aaKnown RBP23.37■■□□□ 1.33
USP39-204ENST00000409766 FANCBQ8NB91 859 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 ATP8A2Q9NTI2 1148 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 CCDC39Q9UFE4 941 aa23.37■■□□□ 1.33
USP39-204ENST00000409766 CCDC196A0A1B0GTZ2 297 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 SPTLC2O15270 562 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 CTAGE5O15320 804 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms