RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 IFNKQ9P0W0 207 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 IBTKQ9P2D0 1353 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 RNF14Q9UBS8 474 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 UGGT2Q9NYU1 1516 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 HSPA8P11142 646 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 LIG1P18858 919 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 RPS6KB1P23443 525 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 SARNPP82979 210 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 CEP85Q6P2H3 762 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 RAB11FIP4Q86YS3 637 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 MPNDQ8N594 471 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 TRIM58Q8NG06 486 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 NUF2Q9BZD4 464 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 DNAJC8O75937 253 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 MRPS9P82933 396 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 ANO1Q5XXA6 986 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 DHX58Q96C10 678 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 DCAF5Q96JK2 942 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 EMILIN1Q9Y6C2 1016 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 FANCAO15360 1455 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 KIAA0232Q92628 1395 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 C6orf229H3BNL8 230 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 GIPC1O14908 333 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 TROVE2P10155 538 aaKnown RBP eCLIP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 PHBP35232 272 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 DNM1Q05193 864 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 TBC1D8BQ0IIM8 1120 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 PAK1Q13153 545 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 HEATR3Q7Z4Q2 680 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 TRIM42Q8IWZ5 723 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 OGFOD1Q8N543 542 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF713Q8N859 430 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 IGSF22Q8N9C0 903 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 IPO4Q8TEX9 1081 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 NOC4LQ9BVI4 516 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 PLCH2O75038 1416 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 F6X3S4 739 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 EEF2P13639 858 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 TCP1P17987 556 aaKnown RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 AFMP43652 599 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 KRT28Q7Z3Y7 464 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 CEP120Q8N960 986 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF830Q96NB3 372 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-203ENST00000409050 GUCA1BQ9UMX6 200 aa6.8□□□□□ -1.32
SCN1A-203ENST00000409050 CCDC160A6NGH7 325 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 IGHDP01880 384 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 PARP1P09874 1014 aaKnown RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 PRIM1P49642 420 aaKnown RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF75DP51815 510 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 AK2P54819 239 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 NMIQ13287 307 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 C20orf194Q5TEA3 1177 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 SYT10Q6XYQ8 523 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 IFT122Q9HBG6 1241 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 LCMT1Q9UIC8 334 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 NPATQ14207 1427 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 GOLGA8CPA6NN73 597 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 P4HA1P13674 534 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 CDC25BP30305 580 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 PLCB3Q01970 1234 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ITIH3Q06033 890 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 SLMAPQ14BN4 828 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 BRDTQ58F21 947 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 SLC9C2Q5TAH2 1124 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 CEP57Q86XR8 500 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZCRB1Q8TBF4 217 aaKnown RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 HAUS1Q96CS2 278 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 CUEDC2Q9H467 287 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 STX8Q9UNK0 236 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF518AQ6AHZ1 1483 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 SOS2Q07890 1332 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 PFDN6O15212 129 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 THAP12O43422 761 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF189O75820 626 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 LMNB2Q03252 620 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZBTB17Q13105 803 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 CCDC125Q86Z20 511 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 MCUR1Q96AQ8 359 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZRANB1Q9UGI0 708 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ERBB4Q15303 1308 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF500O60304 480 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-203ENST00000409050 ZNF853P0CG23 659 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 PSMC4P43686 418 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 DNA2P51530 1060 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 TPTE2Q6XPS3 522 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 DSCC1Q9BVC3 393 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 WWC3Q9ULE0 1092 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 SYNRGQ9UMZ2 1314 aa6.79□□□□□ -1.32
SCN1A-203ENST00000409050 MYL1P05976 194 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 HSPA6P17066 643 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 LMOD1P29536 600 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PCK1P35558 622 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 PDZD4Q76G19 769 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 NBPF5PQ86XG9 351 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 RNF168Q8IYW5 571 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 RNF10Q8N5U6 811 aaKnown RBP6.78□□□□□ -1.32
SCN1A-203ENST00000409050 APPBP2Q92624 585 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 TBC1D31Q96DN5 1066 aa6.78□□□□□ -1.32
SCN1A-203ENST00000409050 CABS1Q96KC9 395 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms