RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 FOXN1O15353 648 aa11.43□□□□□ -0.58
MSH2-202ENST00000406134 STARD3NLO95772 234 aa11.43□□□□□ -0.58
MSH2-202ENST00000406134 SKILP12757 684 aa11.43□□□□□ -0.58
MSH2-202ENST00000406134 METAP2P50579 478 aaKnown RBP eCLIP11.43□□□□□ -0.58
MSH2-202ENST00000406134 CEP57L1Q8IYX8 460 aa11.43□□□□□ -0.58
MSH2-202ENST00000406134 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.43□□□□□ -0.58
MSH2-202ENST00000406134 MYH1P12882 1939 aa11.43□□□□□ -0.58
MSH2-202ENST00000406134 STK36Q9NRP7 1315 aa11.43□□□□□ -0.58
MSH2-202ENST00000406134 GOLGA6L19H0YKK7 550 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 BIN1O00499 593 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 PDE4BQ07343 736 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 PUM3Q15397 648 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 PPP4R3BQ5MIZ7 849 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 IFNL3Q8IZI9 196 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 LRRN4CLQ8ND94 238 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 TIGD1Q96MW7 591 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 TBC1D2BQ9UPU7 963 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 CCDC88AQ3V6T2 1871 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 IDH1O75874 414 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 EIF5P55010 431 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 LRRFIP1Q32MZ4 808 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 LCORLQ8N3X6 602 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 SPATA5Q8NB90 893 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 LPIN2Q92539 896 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 LIFRP42702 1097 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 PNOCQ13519 176 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 TTF1Q15361 905 aaPredicted RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 TAF7LQ5H9L4 462 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 RALYLQ86SE5 291 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 MICU3Q86XE3 530 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 TMEM139Q8IV31 216 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 ZNF384Q8TF68 577 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.42□□□□□ -0.585e-9■■■■□ 20.5
MSH2-202ENST00000406134 TMX1Q9H3N1 280 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 CNNM1Q9NRU3 951 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 TRMT112Q9UI30 125 aaKnown RBP11.42□□□□□ -0.58
MSH2-202ENST00000406134 MROH5Q6ZUA9 1318 aa11.42□□□□□ -0.58
MSH2-202ENST00000406134 DHX16O60231 1041 aaKnown RBP11.41□□□□□ -0.58
MSH2-202ENST00000406134 IL6STP40189 918 aaPredicted RBP11.41□□□□□ -0.58
MSH2-202ENST00000406134 LONRF3Q496Y0 759 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 ARMT1Q9H993 441 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 IFNKQ9P0W0 207 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 RTL9Q8NET4 1388 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 PATL2C9JE40 543 aaKnown RBP11.41□□□□□ -0.58
MSH2-202ENST00000406134 FMNL1O95466 1100 aaPredicted RBP11.41□□□□□ -0.58
MSH2-202ENST00000406134 CEP135Q66GS9 1140 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 FILIP1Q7Z7B0 1213 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 TMEM87BQ96K49 555 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 MBD4O95243 580 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 ISM2Q6H9L7 571 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 DZIP3Q86Y13 1208 aaKnown RBP11.41□□□□□ -0.58
MSH2-202ENST00000406134 MAGEB6Q8N7X4 407 aa11.41□□□□□ -0.58
MSH2-202ENST00000406134 TNRC6CQ9HCJ0 1690 aaKnown RBP11.41□□□□□ -0.58
MSH2-202ENST00000406134 IKBKBO14920 756 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 CAMTA2O94983 1202 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 SLC3A2P08195 630 aaKnown RBP11.4□□□□□ -0.58
MSH2-202ENST00000406134 EVA1CP58658 441 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 CCDC93Q567U6 631 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 STAG1Q8WVM7 1258 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 IMPACTQ9P2X3 320 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 PNPLA7Q6ZV29 1317 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 MYH8P13535 1937 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 WNT7AO00755 349 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 NEMFO60524 1076 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 NTSR2O95665 410 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 PTPN21Q16825 1174 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 SMAP1Q8IYB5 467 aaPredicted RBP11.4□□□□□ -0.58
MSH2-202ENST00000406134 SDF4Q9BRK5 362 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 FAM53CQ9NYF3 392 aa11.4□□□□□ -0.58
MSH2-202ENST00000406134 FBXO2Q9UK22 296 aaPredicted RBP11.4□□□□□ -0.58
MSH2-202ENST00000406134 EVX2Q03828 476 aa11.4□□□□□ -0.59
MSH2-202ENST00000406134 TPD52L1Q16890 204 aaPredicted RBP11.4□□□□□ -0.59
MSH2-202ENST00000406134 PPP1R13BQ96KQ4 1090 aa11.4□□□□□ -0.59
MSH2-202ENST00000406134 PAXBP1Q9Y5B6 917 aa11.4□□□□□ -0.59
MSH2-202ENST00000406134 DDX60LQ5H9U9 1706 aaKnown RBP11.39□□□□□ -0.59
MSH2-202ENST00000406134 TMEM232C9JQI7 657 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 ZBTB43O43298 467 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 PRR29P0C7W0 189 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 C3orf67Q6ZVT6 689 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 ZNF804BA4D1E1 1349 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 BECN2A8MW95 431 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 CPLX1O14810 134 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 MMP1P03956 469 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 IFNAR1P17181 557 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 BCAMP50895 628 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 FUT2Q10981 343 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 ITPK1Q13572 414 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 SEC23AQ15436 765 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 EARS2Q5JPH6 523 aaKnown RBP11.39□□□□□ -0.59
MSH2-202ENST00000406134 NT5DC1Q5TFE4 455 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 PRDM10Q9NQV6 1147 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 TRMT1Q9NXH9 659 aaKnown RBP11.39□□□□□ -0.59
MSH2-202ENST00000406134 UQCRFS1P1P0C7P4 283 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 KCNJ6P48051 423 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 SARSP49591 514 aaKnown RBP11.39□□□□□ -0.59
MSH2-202ENST00000406134 AKNAD1Q5T1N1 836 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 CMTR1Q8N1G2 835 aaKnown RBP11.39□□□□□ -0.59
MSH2-202ENST00000406134 PDCL2Q8N4E4 241 aa11.39□□□□□ -0.59
MSH2-202ENST00000406134 CHMP4CQ96CF2 233 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms