RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 RTKN2Q8IZC4 609 aa13.89□□□□□ -0.19
SKA3-203ENST00000400018 TTC14Q96N46 770 aa13.89□□□□□ -0.19
SKA3-203ENST00000400018 K7ELQ4 463 aaPredicted RBP13.88□□□□□ -0.19
SKA3-203ENST00000400018 CRKP46108 304 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 RHBDL3P58872 404 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 IMMTQ16891 758 aaKnown RBP13.88□□□□□ -0.19
SKA3-203ENST00000400018 PRAMEF18Q5VWM3 479 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 SAMD7Q7Z3H4 446 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 CCDC83Q8IWF9 413 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 ZNF541Q9H0D2 1346 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 FGD1P98174 961 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 ME3Q16798 604 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 APOBEC3HQ6NTF7 200 aaKnown RBP13.88□□□□□ -0.19
SKA3-203ENST00000400018 NIM1KQ8IY84 436 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 ZSWIM6Q9HCJ5 1215 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 USP40Q9NVE5 1235 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 CYP46A1Q9Y6A2 500 aa13.88□□□□□ -0.19
SKA3-203ENST00000400018 UBE2Q2LH0YL09 131 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 LRRFIP1Q32MZ4 808 aaKnown RBP13.87□□□□□ -0.19
SKA3-203ENST00000400018 TPRNQ4KMQ1 711 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 CMTR1Q8N1G2 835 aaKnown RBP13.87□□□□□ -0.19
SKA3-203ENST00000400018 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.87□□□□□ -0.19
SKA3-203ENST00000400018 FAM205AQ6ZU69 1335 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 RFX7Q2KHR2 1363 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 RPS6KB1P23443 525 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 PPARAQ07869 468 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 NBPF9Q3BBW0 867 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 CDC42EP5Q6NZY7 148 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 DDRGK1Q96HY6 314 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 KIF13BQ9NQT8 1826 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 CCDC88AQ3V6T2 1871 aa13.87□□□□□ -0.19
SKA3-203ENST00000400018 TCP10L2B9ZVM9 353 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 RNF20Q5VTR2 975 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 ZSWIM5Q9P217 1185 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 RPAP1Q9BWH6 1393 aaPredicted RBP13.86□□□□□ -0.19
SKA3-203ENST00000400018 DLEC1Q9Y238 1755 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 BRCA1P38398 1863 aaKnown RBP13.86□□□□□ -0.19
SKA3-203ENST00000400018 ST18O60284 1047 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 RANBP6O60518 1105 aaKnown RBP13.86□□□□□ -0.19
SKA3-203ENST00000400018 CFAP100Q494V2 611 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 TBC1D10BQ4KMP7 808 aaPredicted RBP13.86□□□□□ -0.19
SKA3-203ENST00000400018 SPTY2D1Q68D10 685 aaPredicted RBP13.86□□□□□ -0.19
SKA3-203ENST00000400018 CCDC82Q8N4S0 544 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 PSMD1Q99460 953 aa13.86□□□□□ -0.19
SKA3-203ENST00000400018 STRIP1Q5VSL9 837 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 JDP2Q8WYK2 163 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 LAMA4Q16363 1823 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 PRC1O43663 620 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 EIF6P56537 245 aaKnown RBP13.85□□□□□ -0.19
SKA3-203ENST00000400018 BECN1Q14457 450 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 KCNB2Q92953 911 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 CRNKL1Q9BZJ0 848 aaKnown RBP13.85□□□□□ -0.19
SKA3-203ENST00000400018 VEZTQ9HBM0 779 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 ZNRF3Q9ULT6 936 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 SALL1Q9NSC2 1324 aa13.85□□□□□ -0.19
SKA3-203ENST00000400018 BAZ2BQ9UIF8 2168 aaKnown RBP13.85□□□□□ -0.19
SKA3-203ENST00000400018 WDHD1O75717 1129 aaPredicted RBP13.84□□□□□ -0.19
SKA3-203ENST00000400018 FLT1P17948 1338 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 GPR75-ASB3A0A0A6YYF3 556 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 DDNO94850 711 aaPredicted RBP13.84□□□□□ -0.19
SKA3-203ENST00000400018 ANAPC15P60006 121 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 TEKT1Q969V4 418 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 DDX11Q96FC9 970 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 DDTLA6NHG4 134 aaPredicted RBP13.84□□□□□ -0.19
SKA3-203ENST00000400018 JAK2O60674 1132 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 POLR3DP05423 398 aaPredicted RBP13.84□□□□□ -0.19
SKA3-203ENST00000400018 GPR162Q16538 588 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 GLIPR1L2Q4G1C9 344 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 RSBN1LQ6PCB5 846 aaPredicted RBP13.84□□□□□ -0.19
SKA3-203ENST00000400018 ZSCAN29Q8IWY8 852 aaPredicted RBP13.84□□□□□ -0.19
SKA3-203ENST00000400018 GJB4Q9NTQ9 266 aa13.84□□□□□ -0.19
SKA3-203ENST00000400018 RALYLQ86SE5 291 aaKnown RBP13.83□□□□□ -0.2
SKA3-203ENST00000400018 MB21D2Q8IYB1 491 aaPredicted RBP13.83□□□□□ -0.2
SKA3-203ENST00000400018 TBC1D22AQ8WUA7 517 aa13.83□□□□□ -0.2
SKA3-203ENST00000400018 PIBF1Q8WXW3 757 aa13.83□□□□□ -0.2
SKA3-203ENST00000400018 GMPSP49915 693 aaPredicted RBP13.83□□□□□ -0.2
SKA3-203ENST00000400018 MFSD6Q6ZSS7 791 aa13.83□□□□□ -0.2
SKA3-203ENST00000400018 NOL10Q9BSC4 688 aaKnown RBP13.83□□□□□ -0.2
SKA3-203ENST00000400018 NACAP1Q9BZK3 213 aa13.83□□□□□ -0.2
SKA3-203ENST00000400018 RNF181Q9P0P0 153 aa13.83□□□□□ -0.2
SKA3-203ENST00000400018 MKRN1Q9UHC7 482 aaKnown RBP13.83□□□□□ -0.2
SKA3-203ENST00000400018 hCG_1642624A0A1W2PR95 340 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 BAG3O95817 575 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 AKNAD1Q5T1N1 836 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 CCDC84Q86UT8 332 aaPredicted RBP13.82□□□□□ -0.2
SKA3-203ENST00000400018 SUPT20HQ8NEM7 779 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 SNX21Q969T3 373 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 EXOSC10Q01780 885 aaKnown RBP13.82□□□□□ -0.2
SKA3-203ENST00000400018 CC2D2BQ6DHV5 1058 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 CIAPIN1Q6FI81 312 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 MIGA2Q7L4E1 593 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 DHX32Q7L7V1 743 aaKnown RBP13.82□□□□□ -0.2
SKA3-203ENST00000400018 SH3BP5LQ7L8J4 393 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 FAM198AQ9UFP1 575 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 CTNNA3Q9UI47 895 aa13.82□□□□□ -0.2
SKA3-203ENST00000400018 PDS5AQ29RF7 1337 aaKnown RBP13.81□□□□□ -0.2
SKA3-203ENST00000400018 MICU3Q86XE3 530 aa13.81□□□□□ -0.2
SKA3-203ENST00000400018 NCOA7Q8NI08 942 aa13.81□□□□□ -0.2
SKA3-203ENST00000400018 FER1L6Q2WGJ9 1857 aa13.81□□□□□ -0.2
SKA3-203ENST00000400018 GAKO14976 1311 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms