RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 IL16Q14005 1332 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 COL6A1P12109 1028 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 HIBADHP31937 336 aaKnown RBP11.93□□□□□ -0.5
NEDD9-203ENST00000397378 HDLBPQ00341 1268 aaKnown RBP11.93□□□□□ -0.5
NEDD9-203ENST00000397378 SHHQ15465 462 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 CCDC57Q2TAC2 916 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 LMBR1LQ6UX01 489 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 FAM84BQ96KN1 310 aaPredicted RBP11.93□□□□□ -0.5
NEDD9-203ENST00000397378 CNNM1Q9NRU3 951 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 MYH13Q9UKX3 1938 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 LTBP2Q14767 1821 aa11.93□□□□□ -0.5
NEDD9-203ENST00000397378 A0A0G2JLL6 359 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-203ENST00000397378 GYG1P46976 350 aa11.92□□□□□ -0.5
NEDD9-203ENST00000397378 SMAD3P84022 425 aaKnown RBP11.92□□□□□ -0.5
NEDD9-203ENST00000397378 GRIK5Q16478 980 aa11.92□□□□□ -0.5
NEDD9-203ENST00000397378 TAF7LQ5H9L4 462 aa11.92□□□□□ -0.5
NEDD9-203ENST00000397378 NOL9Q5SY16 702 aaKnown RBP11.92□□□□□ -0.5
NEDD9-203ENST00000397378 PRRT2Q7Z6L0 340 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-203ENST00000397378 WWC1Q8IX03 1113 aa11.92□□□□□ -0.5
NEDD9-203ENST00000397378 ZNF594Q96JF6 807 aaPredicted RBP11.92□□□□□ -0.5
NEDD9-203ENST00000397378 ZNF112Q9UJU3 913 aa11.92□□□□□ -0.5
NEDD9-203ENST00000397378 SLC45A1Q9Y2W3 748 aa11.92□□□□□ -0.5
NEDD9-203ENST00000397378 PRKAR2AP13861 404 aaKnown RBP11.91□□□□□ -0.5
NEDD9-203ENST00000397378 CHAF1AQ13111 956 aaPredicted RBP11.91□□□□□ -0.5
NEDD9-203ENST00000397378 FAM110CQ1W6H9 321 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 EPHA10Q5JZY3 1008 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 BEND3Q5T5X7 828 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 FKBP1CQ5VVH2 108 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 ADAMTS19Q8TE59 1207 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 TRIB2Q92519 343 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 UHRF1Q96T88 793 aaPredicted RBP11.91□□□□□ -0.5
NEDD9-203ENST00000397378 PICK1Q9NRD5 415 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 HCN4Q9Y3Q4 1203 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 ZHX2Q9Y6X8 837 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 PTPRFP10586 1907 aa11.91□□□□□ -0.5
NEDD9-203ENST00000397378 SYNGAP1Q96PV0 1343 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 GRM8O00222 908 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 TCP10Q12799 353 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 NCBP3Q53F19 620 aaKnown RBP11.9□□□□□ -0.5
NEDD9-203ENST00000397378 C9orf50Q5SZB4 431 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 IL27Q8NEV9 243 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 TBC1D22AQ8WUA7 517 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 PPM1EQ8WY54 764 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 ZDHHC15Q96MV8 337 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 MRIQ9BWK5 157 aa11.9□□□□□ -0.5
NEDD9-203ENST00000397378 SENP6Q9GZR1 1112 aaPredicted RBP11.9□□□□□ -0.5
NEDD9-203ENST00000397378 IQSEC3Q9UPP2 1182 aaPredicted RBP11.9□□□□□ -0.5
NEDD9-203ENST00000397378 DNAH12Q6ZR08 3092 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 F6X3S4 739 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 VAMP4O75379 141 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 FRAT2O75474 233 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-203ENST00000397378 CYP2B6P20813 491 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 FBXO33Q7Z6M2 555 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 FAM151AQ8WW52 585 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 ATXN2LQ8WWM7 1075 aaKnown RBP11.89□□□□□ -0.51
NEDD9-203ENST00000397378 C1QTNF1Q9BXJ1 281 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 PNMA3Q9UL41 463 aa11.89□□□□□ -0.51
NEDD9-203ENST00000397378 PLXNB2O15031 1838 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 FRMPD3Q5JV73 1810 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 TRIM75PA6NK02 468 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 PTPRAP18433 802 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 ATN1P54259 1190 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-203ENST00000397378 MAP3K21Q5TCX8 1036 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 APOBEC3HQ6NTF7 200 aaKnown RBP11.88□□□□□ -0.51
NEDD9-203ENST00000397378 VPS37DQ86XT2 251 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 SCYL3Q8IZE3 742 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 ASB2Q96Q27 587 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 THEGQ9P2T0 379 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 GJD2Q9UKL4 321 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 AGTPBP1Q9UPW5 1226 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 SUGT1Q9Y2Z0 365 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 AFG3L2Q9Y4W6 797 aa11.88□□□□□ -0.51
NEDD9-203ENST00000397378 MAST3O60307 1309 aa11.87□□□□□ -0.51
NEDD9-203ENST00000397378 MROH5Q6ZUA9 1318 aa11.87□□□□□ -0.51
NEDD9-203ENST00000397378 FANCIQ9NVI1 1328 aa11.87□□□□□ -0.51
NEDD9-203ENST00000397378 GRIN2CQ14957 1233 aa11.87□□□□□ -0.51
NEDD9-203ENST00000397378 PUS3Q9BZE2 481 aaKnown RBP11.87□□□□□ -0.51
NEDD9-203ENST00000397378 PRDM5Q9NQX1 630 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-203ENST00000397378 C9orf78Q9NZ63 289 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-203ENST00000397378 DOCK2Q92608 1830 aa11.87□□□□□ -0.51
NEDD9-203ENST00000397378 DOCK1Q14185 1865 aa11.87□□□□□ -0.51
NEDD9-203ENST00000397378 ALDH1L1O75891 902 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 ZKSCAN1P17029 563 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-203ENST00000397378 CCND3P30281 292 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-203ENST00000397378 GCLCP48506 637 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-203ENST00000397378 CACNB2Q08289 660 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-203ENST00000397378 CAVIN4Q5BKX8 364 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 TREML2Q5T2D2 321 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 LHX8Q68G74 356 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 HHIPL2Q6UWX4 724 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 SNX27Q96L92 541 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 ATP11BQ9Y2G3 1177 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 ARIH1Q9Y4X5 557 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-203ENST00000397378 PHIPQ8WWQ0 1821 aa11.86□□□□□ -0.51
NEDD9-203ENST00000397378 RTP1P59025 263 aa11.85□□□□□ -0.51
NEDD9-203ENST00000397378 MRPS5P82675 430 aaKnown RBP11.85□□□□□ -0.51
NEDD9-203ENST00000397378 BADQ92934 168 aa11.85□□□□□ -0.51
NEDD9-203ENST00000397378 KAZALD1Q96I82 304 aa11.85□□□□□ -0.51
NEDD9-203ENST00000397378 NUDT12Q9BQG2 462 aa11.85□□□□□ -0.51
NEDD9-203ENST00000397378 KIF16BQ96L93 1317 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms