RNA–Protein interactions for RNA: ENST00000395859.2

VCPKMT-201, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best) BASIC

Gene VCPKMT, Length 795 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-201ENST00000395859 SUGT1Q9Y2Z0 365 aa17.43■□□□□ 0.38
VCPKMT-201ENST00000395859 PTPRAP18433 802 aa17.42■□□□□ 0.38
VCPKMT-201ENST00000395859 NFIAQ12857 509 aa17.42■□□□□ 0.38
VCPKMT-201ENST00000395859 RALBP1Q15311 655 aa17.42■□□□□ 0.38
VCPKMT-201ENST00000395859 LMBR1LQ6UX01 489 aa17.42■□□□□ 0.38
VCPKMT-201ENST00000395859 DNAAF4Q8WXU2 420 aa17.42■□□□□ 0.38
VCPKMT-201ENST00000395859 ZHX2Q9Y6X8 837 aa17.42■□□□□ 0.38
VCPKMT-201ENST00000395859 MAP3K10Q02779 954 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 SCYL3Q8IZE3 742 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 ANKRD13CQ8N6S4 541 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 TRIB2Q92519 343 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 CNNM1Q9NRU3 951 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 FAM198AQ9UFP1 575 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 TAOK2Q9UL54 1235 aa17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 IQSEC3Q9UPP2 1182 aaPredicted RBP17.41■□□□□ 0.38
VCPKMT-201ENST00000395859 MAST2Q6P0Q8 1798 aa17.4■□□□□ 0.38
VCPKMT-201ENST00000395859 FLIIQ13045 1269 aa17.4■□□□□ 0.38
VCPKMT-201ENST00000395859 SMCR8Q8TEV9 937 aaPredicted RBP17.4■□□□□ 0.38
VCPKMT-201ENST00000395859 PUS3Q9BZE2 481 aaKnown RBP17.4■□□□□ 0.38
VCPKMT-201ENST00000395859 TTYH1Q9H313 450 aaPredicted RBP17.4■□□□□ 0.38
VCPKMT-201ENST00000395859 LTBP2Q14767 1821 aa17.4■□□□□ 0.38
VCPKMT-201ENST00000395859 TNFRSF10AO00220 468 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 SLC4A2P04920 1241 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 ZEB1P37275 1124 aaPredicted RBP17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 CALD1Q05682 793 aaKnown RBP17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 CHAF1AQ13111 956 aaPredicted RBP17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 CCDC57Q2TAC2 916 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 LHX8Q68G74 356 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 CDC42EP5Q6NZY7 148 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 GADL1Q6ZQY3 521 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 STK31Q9BXU1 1019 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 AGTPBP1Q9UPW5 1226 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 CHMP3Q9Y3E7 222 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 MAST3O60307 1309 aa17.39■□□□□ 0.37
VCPKMT-201ENST00000395859 HOXD11P31277 338 aaPredicted RBP17.38■□□□□ 0.37
VCPKMT-201ENST00000395859 TCP10Q12799 353 aa17.38■□□□□ 0.37
VCPKMT-201ENST00000395859 ZFPM1Q8IX07 1006 aa17.38■□□□□ 0.37
VCPKMT-201ENST00000395859 MYLIPQ8WY64 445 aa17.38■□□□□ 0.37
VCPKMT-201ENST00000395859 DAGLAQ9Y4D2 1042 aa17.38■□□□□ 0.37
VCPKMT-201ENST00000395859 AK9Q5TCS8 1911 aa17.37■□□□□ 0.37
VCPKMT-201ENST00000395859 TREML2Q5T2D2 321 aa17.37■□□□□ 0.37
VCPKMT-201ENST00000395859 VGLL2Q8N8G2 317 aa17.37■□□□□ 0.37
VCPKMT-201ENST00000395859 DOCK2Q92608 1830 aa17.37■□□□□ 0.37
VCPKMT-201ENST00000395859 DOCK1Q14185 1865 aa17.37■□□□□ 0.37
VCPKMT-201ENST00000395859 LOC285556D6RIA3 1793 aa17.36■□□□□ 0.37
VCPKMT-201ENST00000395859 PRKAR2AP13861 404 aaKnown RBP17.36■□□□□ 0.37
VCPKMT-201ENST00000395859 TJAP1Q5JTD0 557 aa17.36■□□□□ 0.37
VCPKMT-201ENST00000395859 BEND3Q5T5X7 828 aa17.36■□□□□ 0.37
VCPKMT-201ENST00000395859 APAF1O14727 1248 aa17.35■□□□□ 0.37
VCPKMT-201ENST00000395859 SPINK5Q9NQ38 1064 aaPredicted RBP17.35■□□□□ 0.37
VCPKMT-201ENST00000395859 RFX7Q2KHR2 1363 aa17.35■□□□□ 0.37
VCPKMT-201ENST00000395859 CHD9Q3L8U1 2897 aa17.35■□□□□ 0.37
VCPKMT-201ENST00000395859 CACNA1FO60840 1977 aa17.35■□□□□ 0.37
VCPKMT-201ENST00000395859 XIRP2A4UGR9 3374 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 XRCC5P13010 732 aaKnown RBP17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 GCLCP48506 637 aaPredicted RBP17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 FKBP5Q13451 457 aaPredicted RBP17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 WDR43Q15061 677 aaKnown RBP eCLIP17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 TAF7LQ5H9L4 462 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 FRMPD3Q5JV73 1810 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 MROH5Q6ZUA9 1318 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 SH3BP5LQ7L8J4 393 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 USP38Q8NB14 1042 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 TSR2Q969E8 191 aaKnown RBP17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 KAZALD1Q96I82 304 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 PICK1Q9NRD5 415 aa17.34■□□□□ 0.37
VCPKMT-201ENST00000395859 KIF16BQ96L93 1317 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 MYBBP1AQ9BQG0 1328 aaKnown RBP17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 SLURP2P0DP57 97 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 SMAD3P84022 425 aaKnown RBP17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 SHHQ15465 462 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 C9orf50Q5SZB4 431 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 VPS37DQ86XT2 251 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 PROCA1Q8NCQ7 364 aaPredicted RBP17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 USP6NLQ92738 828 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 MORF4L1Q9UBU8 362 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 PNMA3Q9UL41 463 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 PIEZO1Q92508 2521 aa17.33■□□□□ 0.36
VCPKMT-201ENST00000395859 TRIM75PA6NK02 468 aa17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 CTNND1O60716 968 aaKnown RBP17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 CACNB2Q08289 660 aaPredicted RBP17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 DIXDC1Q155Q3 683 aa17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 TWISTNBQ3B726 338 aaPredicted RBP17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 FAM122AQ96E09 287 aa17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 LBHD1Q9BQE6 289 aaPredicted RBP17.32■□□□□ 0.36
VCPKMT-201ENST00000395859 GRM8O00222 908 aa17.31■□□□□ 0.36
VCPKMT-201ENST00000395859 FOSL2P15408 326 aa17.31■□□□□ 0.36
VCPKMT-201ENST00000395859 CAVIN4Q5BKX8 364 aa17.31■□□□□ 0.36
VCPKMT-201ENST00000395859 CCDC84Q86UT8 332 aaPredicted RBP17.31■□□□□ 0.36
VCPKMT-201ENST00000395859 IDI2Q9BXS1 227 aa17.31■□□□□ 0.36
VCPKMT-201ENST00000395859 REV3LO60673 3130 aa17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 FRAT2O75474 233 aaPredicted RBP17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 PDE8BO95263 885 aa17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 CYP2B6P20813 491 aa17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 FGFR2P21802 821 aa17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 CCND3P30281 292 aaPredicted RBP17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 LRRC24Q50LG9 513 aa17.3■□□□□ 0.36
VCPKMT-201ENST00000395859 TMEM265A0A087WTH1 108 aa17.29■□□□□ 0.36
VCPKMT-201ENST00000395859 F6X3S4 739 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms