RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 SH3RF3Q8TEJ3 882 aaPredicted RBP28.83■■■□□ 2.21
SHMT1-204ENST00000395682 AK9Q5TCS8 1911 aa28.82■■■□□ 2.2
SHMT1-204ENST00000395682 NPM3O75607 178 aaKnown RBP28.82■■■□□ 2.2
SHMT1-204ENST00000395682 CYP7A1P22680 504 aa28.82■■■□□ 2.2
SHMT1-204ENST00000395682 GJA5P36382 358 aa28.82■■■□□ 2.2
SHMT1-204ENST00000395682 PPP4CP60510 307 aa28.82■■■□□ 2.2
SHMT1-204ENST00000395682 MAP3K12Q12852 859 aa28.82■■■□□ 2.2
SHMT1-204ENST00000395682 TEX11Q8IYF3 940 aa28.82■■■□□ 2.2
SHMT1-204ENST00000395682 ZKSCAN4Q969J2 545 aaPredicted RBP28.82■■■□□ 2.2
SHMT1-204ENST00000395682 DDTLA6NHG4 134 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-204ENST00000395682 MANSC4A6NHS7 340 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-204ENST00000395682 PLCG2P16885 1265 aa28.81■■■□□ 2.2
SHMT1-204ENST00000395682 TTF1Q15361 905 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-204ENST00000395682 MAGEB6Q8N7X4 407 aa28.81■■■□□ 2.2
SHMT1-204ENST00000395682 OPTNQ96CV9 577 aa28.81■■■□□ 2.2
SHMT1-204ENST00000395682 DNAJC2Q99543 621 aaKnown RBP28.81■■■□□ 2.2
SHMT1-204ENST00000395682 ATP5JP18859 108 aa28.8■■■□□ 2.2
SHMT1-204ENST00000395682 INHBEP58166 350 aa28.8■■■□□ 2.2
SHMT1-204ENST00000395682 CNKSR2Q8WXI2 1034 aa28.8■■■□□ 2.2
SHMT1-204ENST00000395682 BOLA2Q9H3K6 86 aa28.8■■■□□ 2.2
SHMT1-204ENST00000395682 MYO5AQ9Y4I1 1855 aaKnown RBP28.8■■■□□ 2.2
SHMT1-204ENST00000395682 GOLIM4O00461 696 aa28.79■■■□□ 2.2
SHMT1-204ENST00000395682 INPP5BP32019 993 aa28.79■■■□□ 2.2
SHMT1-204ENST00000395682 ZNF112Q9UJU3 913 aa28.79■■■□□ 2.2
SHMT1-204ENST00000395682 SNCAIPQ9Y6H5 919 aa28.79■■■□□ 2.2
SHMT1-204ENST00000395682 TNS4Q8IZW8 715 aa28.78■■■□□ 2.2
SHMT1-204ENST00000395682 OTOFQ9HC10 1997 aa28.77■■■□□ 2.2
SHMT1-204ENST00000395682 TMED8Q6PL24 325 aaPredicted RBP28.77■■■□□ 2.2
SHMT1-204ENST00000395682 OTUD5Q96G74 571 aa28.77■■■□□ 2.2
SHMT1-204ENST00000395682 OSBPL5Q9H0X9 879 aaPredicted RBP28.77■■■□□ 2.2
SHMT1-204ENST00000395682 DYNLL1P63167 89 aaKnown RBP28.76■■■□□ 2.19
SHMT1-204ENST00000395682 MAP3K10Q02779 954 aa28.76■■■□□ 2.19
SHMT1-204ENST00000395682 ERO1BQ86YB8 467 aa28.76■■■□□ 2.19
SHMT1-204ENST00000395682 MIGA1Q8NAN2 632 aa28.76■■■□□ 2.19
SHMT1-204ENST00000395682 EDC3Q96F86 508 aaKnown RBP28.76■■■□□ 2.19
SHMT1-204ENST00000395682 SUPT16HQ9Y5B9 1047 aaKnown RBP28.76■■■□□ 2.19
SHMT1-204ENST00000395682 ATRNL1Q5VV63 1379 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 MAST2Q6P0Q8 1798 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 SPDYE5A6NIY4 337 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 AAMPQ13685 434 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 SLC9C2Q5TAH2 1124 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 IFNL1Q8IU54 200 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 TGFBRAP1Q8WUH2 860 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 HAUS7Q99871 368 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 PAG1Q9NWQ8 432 aa28.75■■■□□ 2.19
SHMT1-204ENST00000395682 TBC1D8O95759 1140 aa28.74■■■□□ 2.19
SHMT1-204ENST00000395682 ECHDC1Q9NTX5 307 aa28.74■■■□□ 2.19
SHMT1-204ENST00000395682 PHF20L1A8MW92 1017 aa28.73■■■□□ 2.19
SHMT1-204ENST00000395682 SLURP2P0DP57 97 aa28.73■■■□□ 2.19
SHMT1-204ENST00000395682 MAPKAPK5Q8IW41 473 aa28.73■■■□□ 2.19
SHMT1-204ENST00000395682 MS4A4AQ96JQ5 239 aa28.73■■■□□ 2.19
SHMT1-204ENST00000395682 ALDH1A1P00352 501 aa28.72■■■□□ 2.19
SHMT1-204ENST00000395682 PDE6AP16499 860 aa28.72■■■□□ 2.19
SHMT1-204ENST00000395682 GTF2A2P52657 109 aa28.72■■■□□ 2.19
SHMT1-204ENST00000395682 CERS3Q8IU89 383 aa28.72■■■□□ 2.19
SHMT1-204ENST00000395682 TESPA1A2RU30 521 aaPredicted RBP28.71■■■□□ 2.19
SHMT1-204ENST00000395682 IGF2BP3O00425 579 aaKnown RBP eCLIP28.71■■■□□ 2.19
SHMT1-204ENST00000395682 TBC1D12O60347 775 aa28.71■■■□□ 2.19
SHMT1-204ENST00000395682 NOL9Q5SY16 702 aaKnown RBP28.71■■■□□ 2.19
SHMT1-204ENST00000395682 GPATCH3Q96I76 525 aa28.71■■■□□ 2.19
SHMT1-204ENST00000395682 PTPN18Q99952 460 aa28.71■■■□□ 2.19
SHMT1-204ENST00000395682 PPATQ06203 517 aa28.7■■■□□ 2.18
SHMT1-204ENST00000395682 PPIL2Q13356 520 aa28.7■■■□□ 2.18
SHMT1-204ENST00000395682 HDAC1Q13547 482 aaPredicted RBP28.7■■■□□ 2.18
SHMT1-204ENST00000395682 OTUD7BQ6GQQ9 843 aa28.7■■■□□ 2.18
SHMT1-204ENST00000395682 EXOC6Q8TAG9 804 aa28.7■■■□□ 2.18
SHMT1-204ENST00000395682 DHX36Q9H2U1 1008 aaKnown RBP28.7■■■□□ 2.18
SHMT1-204ENST00000395682 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.7■■■□□ 2.18
SHMT1-204ENST00000395682 FLT1P17948 1338 aa28.69■■■□□ 2.18
SHMT1-204ENST00000395682 ZNF532Q9HCE3 1301 aa28.69■■■□□ 2.18
SHMT1-204ENST00000395682 IRF6O14896 467 aa28.69■■■□□ 2.18
SHMT1-204ENST00000395682 PI4KBQ9UBF8 816 aa28.69■■■□□ 2.18
SHMT1-204ENST00000395682 COL2A1P02458 1487 aaPredicted RBP28.69■■■□□ 2.18
SHMT1-204ENST00000395682 CASP8AP2Q9UKL3 1982 aa28.69■■■□□ 2.18
SHMT1-204ENST00000395682 DOCK2Q92608 1830 aa28.69■■■□□ 2.18
SHMT1-204ENST00000395682 CCL15-CCL14A0A0B4J2E2 113 aa28.68■■■□□ 2.18
SHMT1-204ENST00000395682 MAGEB6P1A0A0J9YX57 407 aa28.68■■■□□ 2.18
SHMT1-204ENST00000395682 CCL15Q16663 113 aa28.68■■■□□ 2.18
SHMT1-204ENST00000395682 BRI3BPQ8WY22 251 aa28.68■■■□□ 2.18
SHMT1-204ENST00000395682 FAM196BA6NMK8 535 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 CTNND1O60716 968 aaKnown RBP28.67■■■□□ 2.18
SHMT1-204ENST00000395682 USP5P45974 858 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 SNAPC2Q13487 334 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 TSHZ3Q63HK5 1081 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 SCYL3Q8IZE3 742 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 GCC1Q96CN9 775 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 RIOK1Q9BRS2 568 aaKnown RBP28.67■■■□□ 2.18
SHMT1-204ENST00000395682 CFHR5Q9BXR6 569 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.67■■■□□ 2.18
SHMT1-204ENST00000395682 R3HDMLQ9H3Y0 253 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 PICK1Q9NRD5 415 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 ZBTB47Q9UFB7 747 aaPredicted RBP28.67■■■□□ 2.18
SHMT1-204ENST00000395682 SAP30BPQ9UHR5 308 aaKnown RBP28.67■■■□□ 2.18
SHMT1-204ENST00000395682 PALD1Q9ULE6 856 aa28.67■■■□□ 2.18
SHMT1-204ENST00000395682 TCRBV5S4A2TA0A5A2 114 aa28.66■■■□□ 2.18
SHMT1-204ENST00000395682 CETPP11597 493 aa28.66■■■□□ 2.18
SHMT1-204ENST00000395682 IFFO2Q5TF58 517 aa28.66■■■□□ 2.18
SHMT1-204ENST00000395682 ANKRD45Q5TZF3 282 aa28.66■■■□□ 2.18
SHMT1-204ENST00000395682 HERC5Q9UII4 1024 aaKnown RBP28.65■■■□□ 2.18
SHMT1-204ENST00000395682 GPR25O00155 361 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms