RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MAP2K2P36507 400 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 NUCB1Q02818 461 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 NOGQ13253 232 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 DCAF15Q66K64 600 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 CHD1LQ86WJ1 897 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 RASAL3Q86YV0 1011 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 MIGA1Q8NAN2 632 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 STAP2Q9UGK3 403 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 PCNTO95613 3336 aa26.31■■□□□ 1.8
CLN3-207ENST00000395653 ZNF532Q9HCE3 1301 aa26.3■■□□□ 1.8
CLN3-207ENST00000395653 ATRNL1Q5VV63 1379 aa26.3■■□□□ 1.8
CLN3-207ENST00000395653 TCRBV5S4A2TA0A5A2 114 aa26.3■■□□□ 1.8
CLN3-207ENST00000395653 DYNLL1P63167 89 aaKnown RBP26.3■■□□□ 1.8
CLN3-207ENST00000395653 ADD2P35612 726 aa26.29■■□□□ 1.8
CLN3-207ENST00000395653 ZSCAN25Q6NSZ9 544 aa26.29■■□□□ 1.8
CLN3-207ENST00000395653 SH3BP5LQ7L8J4 393 aa26.29■■□□□ 1.8
CLN3-207ENST00000395653 ANKRD13AQ8IZ07 590 aa26.29■■□□□ 1.8
CLN3-207ENST00000395653 KBTBD3Q8NAB2 608 aa26.29■■□□□ 1.8
CLN3-207ENST00000395653 CSRNP1Q96S65 589 aa26.29■■□□□ 1.8
CLN3-207ENST00000395653 OSBPL5Q9H0X9 879 aaPredicted RBP26.29■■□□□ 1.8
CLN3-207ENST00000395653 AOC2O75106 756 aa26.28■■□□□ 1.8
CLN3-207ENST00000395653 PDE1AP54750 535 aa26.28■■□□□ 1.8
CLN3-207ENST00000395653 ZSCAN29Q8IWY8 852 aaPredicted RBP26.28■■□□□ 1.8
CLN3-207ENST00000395653 RIOK1Q9BRS2 568 aaKnown RBP26.28■■□□□ 1.8
CLN3-207ENST00000395653 DDTLA6NHG4 134 aaPredicted RBP26.27■■□□□ 1.8
CLN3-207ENST00000395653 UBE3CQ15386 1083 aa26.27■■□□□ 1.8
CLN3-207ENST00000395653 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.27■■□□□ 1.8
CLN3-207ENST00000395653 ZNF341Q9BYN7 854 aa26.27■■□□□ 1.8
CLN3-207ENST00000395653 FOCADQ5VW36 1801 aa26.27■■□□□ 1.8
CLN3-207ENST00000395653 OTOFQ9HC10 1997 aa26.26■■□□□ 1.8
CLN3-207ENST00000395653 MAGEB6P1A0A0J9YX57 407 aa26.26■■□□□ 1.79
CLN3-207ENST00000395653 MIGA2Q7L4E1 593 aa26.26■■□□□ 1.79
CLN3-207ENST00000395653 TGFBRAP1Q8WUH2 860 aa26.26■■□□□ 1.79
CLN3-207ENST00000395653 FLT1P17948 1338 aa26.26■■□□□ 1.79
CLN3-207ENST00000395653 MYH7P12883 1935 aa26.26■■□□□ 1.79
CLN3-207ENST00000395653 CDK5RAP2Q96SN8 1893 aa26.25■■□□□ 1.79
CLN3-207ENST00000395653 MAP3K9P80192 1104 aa26.25■■□□□ 1.79
CLN3-207ENST00000395653 SLC10A4Q96EP9 437 aa26.25■■□□□ 1.79
CLN3-207ENST00000395653 CLMNQ96JQ2 1002 aa26.25■■□□□ 1.79
CLN3-207ENST00000395653 AK9Q5TCS8 1911 aa26.25■■□□□ 1.79
CLN3-207ENST00000395653 MAP2K1Q02750 393 aaPredicted RBP26.24■■□□□ 1.79
CLN3-207ENST00000395653 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.24■■□□□ 1.79
CLN3-207ENST00000395653 MAPKAPK5Q8IW41 473 aa26.24■■□□□ 1.79
CLN3-207ENST00000395653 WRNIP1Q96S55 665 aa26.24■■□□□ 1.79
CLN3-207ENST00000395653 CENPBP07199 599 aaPredicted RBP26.23■■□□□ 1.79
CLN3-207ENST00000395653 MAP3K10Q02779 954 aa26.23■■□□□ 1.79
CLN3-207ENST00000395653 DHX36Q9H2U1 1008 aaKnown RBP26.23■■□□□ 1.79
CLN3-207ENST00000395653 ZNF112Q9UJU3 913 aa26.23■■□□□ 1.79
CLN3-207ENST00000395653 LRRFIP1Q32MZ4 808 aaKnown RBP26.22■■□□□ 1.79
CLN3-207ENST00000395653 ZIC5Q96T25 663 aa26.22■■□□□ 1.79
CLN3-207ENST00000395653 CSADQ9Y600 493 aa26.22■■□□□ 1.79
CLN3-207ENST00000395653 CHGBP05060 677 aa26.22■■□□□ 1.79
CLN3-207ENST00000395653 ZFYP08048 801 aaPredicted RBP26.22■■□□□ 1.79
CLN3-207ENST00000395653 KIF23Q02241 960 aaPredicted RBP26.22■■□□□ 1.79
CLN3-207ENST00000395653 VGLL4Q14135 290 aa26.22■■□□□ 1.79
CLN3-207ENST00000395653 SPRYD7Q5W111 196 aa26.22■■□□□ 1.79
CLN3-207ENST00000395653 CRNKL1Q9BZJ0 848 aaKnown RBP26.22■■□□□ 1.79
CLN3-207ENST00000395653 WBP1LQ9NX94 342 aa26.22■■□□□ 1.79
CLN3-207ENST00000395653 TBC1D12O60347 775 aa26.21■■□□□ 1.79
CLN3-207ENST00000395653 ZBTB48P10074 688 aaPredicted RBP26.21■■□□□ 1.79
CLN3-207ENST00000395653 USP5P45974 858 aa26.21■■□□□ 1.79
CLN3-207ENST00000395653 SLFNL1Q499Z3 407 aa26.21■■□□□ 1.79
CLN3-207ENST00000395653 REM2Q8IYK8 340 aaPredicted RBP26.21■■□□□ 1.79
CLN3-207ENST00000395653 LCORLQ8N3X6 602 aa26.21■■□□□ 1.79
CLN3-207ENST00000395653 OSBPL3Q9H4L5 887 aa26.21■■□□□ 1.79
CLN3-207ENST00000395653 HSPA1AP0DMV8 641 aaKnown RBP26.2■■□□□ 1.78
CLN3-207ENST00000395653 HSPA1BP0DMV9 641 aaKnown RBP26.2■■□□□ 1.78
CLN3-207ENST00000395653 PLEKHM2Q8IWE5 1019 aa26.2■■□□□ 1.78
CLN3-207ENST00000395653 WNK4Q96J92 1243 aa26.2■■□□□ 1.78
CLN3-207ENST00000395653 ELP3Q9H9T3 547 aa26.2■■□□□ 1.78
CLN3-207ENST00000395653 PI4KBQ9UBF8 816 aa26.2■■□□□ 1.78
CLN3-207ENST00000395653 RNF113AO15541 343 aaKnown RBP26.19■■□□□ 1.78
CLN3-207ENST00000395653 MBD4O95243 580 aa26.19■■□□□ 1.78
CLN3-207ENST00000395653 FSD1Q9BTV5 496 aa26.19■■□□□ 1.78
CLN3-207ENST00000395653 SNCAIPQ9Y6H5 919 aa26.19■■□□□ 1.78
CLN3-207ENST00000395653 INPP5BP32019 993 aa26.18■■□□□ 1.78
CLN3-207ENST00000395653 APPBP2Q92624 585 aa26.18■■□□□ 1.78
CLN3-207ENST00000395653 ZKSCAN4Q969J2 545 aaPredicted RBP26.18■■□□□ 1.78
CLN3-207ENST00000395653 EVI5LQ96CN4 794 aa26.18■■□□□ 1.78
CLN3-207ENST00000395653 PUS7LQ9H0K6 701 aaKnown RBP26.18■■□□□ 1.78
CLN3-207ENST00000395653 ARMT1Q9H993 441 aa26.18■■□□□ 1.78
CLN3-207ENST00000395653 HERC5Q9UII4 1024 aaKnown RBP26.18■■□□□ 1.78
CLN3-207ENST00000395653 PHF20L1A8MW92 1017 aa26.17■■□□□ 1.78
CLN3-207ENST00000395653 NOL9Q5SY16 702 aaKnown RBP26.17■■□□□ 1.78
CLN3-207ENST00000395653 AIDAQ96BJ3 306 aa26.17■■□□□ 1.78
CLN3-207ENST00000395653 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.17■■□□□ 1.78
CLN3-207ENST00000395653 PALD1Q9ULE6 856 aa26.17■■□□□ 1.78
CLN3-207ENST00000395653 SPDYE5A6NIY4 337 aa26.16■■□□□ 1.78
CLN3-207ENST00000395653 HLA-DOAP06340 250 aa26.16■■□□□ 1.78
CLN3-207ENST00000395653 MKRN3Q13064 507 aaKnown RBP26.16■■□□□ 1.78
CLN3-207ENST00000395653 DDX60LQ5H9U9 1706 aaKnown RBP26.16■■□□□ 1.78
CLN3-207ENST00000395653 OPTNQ96CV9 577 aa26.16■■□□□ 1.78
CLN3-207ENST00000395653 BEGAINQ9BUH8 593 aa26.16■■□□□ 1.78
CLN3-207ENST00000395653 SAP30BPQ9UHR5 308 aaKnown RBP26.16■■□□□ 1.78
CLN3-207ENST00000395653 SIPA1L1O43166 1804 aa26.16■■□□□ 1.78
CLN3-207ENST00000395653 LAMB1P07942 1786 aa26.16■■□□□ 1.78
CLN3-207ENST00000395653 METTL16Q86W50 562 aaKnown RBP26.15■■□□□ 1.78
CLN3-207ENST00000395653 ERO1BQ86YB8 467 aa26.15■■□□□ 1.78
CLN3-207ENST00000395653 FOXP4Q8IVH2 680 aaPredicted RBP26.15■■□□□ 1.78
CLN3-207ENST00000395653 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms