RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 PRKAB2O43741 272 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 MAGEB6Q8N7X4 407 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 ZSWIM5Q9P217 1185 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 MBD4O95243 580 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 GRIN1Q05586 938 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 UBE3CQ15386 1083 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 FOXP4Q8IVH2 680 aaPredicted RBP23.79■■□□□ 1.4
CLK3-202ENST00000395066 HPSEQ9Y251 543 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 WDR19Q8NEZ3 1342 aa23.79■■□□□ 1.4
CLK3-202ENST00000395066 METTL16Q86W50 562 aaKnown RBP23.78■■□□□ 1.4
CLK3-202ENST00000395066 ABCC12Q96J65 1359 aa23.78■■□□□ 1.4
CLK3-202ENST00000395066 TOMM22Q9NS69 142 aa23.78■■□□□ 1.4
CLK3-202ENST00000395066 KCNJ14Q9UNX9 436 aa23.78■■□□□ 1.4
CLK3-202ENST00000395066 TMEM232C9JQI7 657 aa23.78■■□□□ 1.4
CLK3-202ENST00000395066 CDHR2Q9BYE9 1310 aa23.77■■□□□ 1.4
CLK3-202ENST00000395066 IFIT3O14879 490 aaKnown RBP23.77■■□□□ 1.4
CLK3-202ENST00000395066 TTF1Q15361 905 aaPredicted RBP23.77■■□□□ 1.4
CLK3-202ENST00000395066 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.77■■□□□ 1.4
CLK3-202ENST00000395066 ECM29Q5VYK3 1845 aa23.77■■□□□ 1.4
CLK3-202ENST00000395066 CDKL5O76039 1030 aa23.77■■□□□ 1.4
CLK3-202ENST00000395066 TPM4P67936 248 aa23.77■■□□□ 1.4
CLK3-202ENST00000395066 FAM53CQ9NYF3 392 aa23.77■■□□□ 1.4
CLK3-202ENST00000395066 TUBE1Q9UJT0 475 aa23.77■■□□□ 1.4
CLK3-202ENST00000395066 BTBD18B2RXH4 712 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 SERPINC1P01008 464 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 TERF2Q15554 542 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 IFNL3Q8IZI9 196 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 CCDC150Q8NCX0 1101 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 NAPBQ9H115 298 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 UBASH3AP57075 661 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 PDE4BQ07343 736 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 RASGRF1Q13972 1273 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 TAF3Q5VWG9 929 aa23.76■■□□□ 1.39
CLK3-202ENST00000395066 CPLX2Q6PUV4 134 aaKnown RBP23.76■■□□□ 1.39
CLK3-202ENST00000395066 TRIM29Q14134 588 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 CFAP100Q494V2 611 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 RESP18Q5W5W9 173 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 FANCLQ9NW38 375 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 SLC12A7Q9Y666 1083 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 ATRNO75882 1429 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 PPP6R2O75170 966 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 ATP2B1P20020 1258 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 BMP6P22004 513 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 PCDHA5Q9Y5H7 936 aa23.75■■□□□ 1.39
CLK3-202ENST00000395066 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.74■■□□□ 1.39
CLK3-202ENST00000395066 CYP19A1P11511 503 aaPredicted RBP23.74■■□□□ 1.39
CLK3-202ENST00000395066 ARID4AP29374 1257 aaPredicted RBP23.74■■□□□ 1.39
CLK3-202ENST00000395066 SPATA5Q8NB90 893 aa23.74■■□□□ 1.39
CLK3-202ENST00000395066 CNNM3Q8NE01 707 aa23.74■■□□□ 1.39
CLK3-202ENST00000395066 KCNH3Q9ULD8 1083 aa23.74■■□□□ 1.39
CLK3-202ENST00000395066 TMEM87BQ96K49 555 aa23.74■■□□□ 1.39
CLK3-202ENST00000395066 TEX13AQ9BXU3 409 aaPredicted RBP23.74■■□□□ 1.39
CLK3-202ENST00000395066 SEC31BQ9NQW1 1179 aa23.74■■□□□ 1.39
CLK3-202ENST00000395066 SMIM22K7EJ46 135 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 MYL5Q02045 173 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 ZNF827Q17R98 1081 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 GRAMD1CQ8IYS0 662 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 MIGA1Q8NAN2 632 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 SOS2Q07890 1332 aaPredicted RBP23.73■■□□□ 1.39
CLK3-202ENST00000395066 IKBKBO14920 756 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 PDE8AO60658 829 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 JMYQ8N9B5 988 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 ZNF512BQ96KM6 892 aaPredicted RBP23.73■■□□□ 1.39
CLK3-202ENST00000395066 TIGD1Q96MW7 591 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 L2HGDHQ9H9P8 463 aa23.73■■□□□ 1.39
CLK3-202ENST00000395066 TOB1P50616 345 aaPredicted RBP23.72■■□□□ 1.39
CLK3-202ENST00000395066 SSRP1Q08945 709 aaKnown RBP23.72■■□□□ 1.39
CLK3-202ENST00000395066 PUM3Q15397 648 aaKnown RBP23.72■■□□□ 1.39
CLK3-202ENST00000395066 LCORLQ8N3X6 602 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 SLAIN2Q9P270 581 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 IQSEC3Q9UPP2 1182 aaPredicted RBP23.72■■□□□ 1.39
CLK3-202ENST00000395066 A0A0G2JS52 829 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 PSDA5PKW4 1024 aaPredicted RBP23.72■■□□□ 1.39
CLK3-202ENST00000395066 NR5A1Q13285 461 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 ERCC6LQ2NKX8 1250 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 KRBA2Q6ZNG9 492 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 HOMER1Q86YM7 354 aa23.72■■□□□ 1.39
CLK3-202ENST00000395066 GSG1L2A8MUP6 293 aa23.71■■□□□ 1.39
CLK3-202ENST00000395066 PATL2C9JE40 543 aaKnown RBP23.71■■□□□ 1.39
CLK3-202ENST00000395066 SGMS1Q86VZ5 419 aa23.71■■□□□ 1.39
CLK3-202ENST00000395066 DZIP3Q86Y13 1208 aaKnown RBP23.71■■□□□ 1.39
CLK3-202ENST00000395066 PDILTQ8N807 584 aa23.71■■□□□ 1.39
CLK3-202ENST00000395066 LPIN2Q92539 896 aa23.71■■□□□ 1.39
CLK3-202ENST00000395066 XIRP1Q702N8 1843 aaKnown RBP23.71■■□□□ 1.39
CLK3-202ENST00000395066 PRR29P0C7W0 189 aa23.71■■□□□ 1.39
CLK3-202ENST00000395066 ZNF446Q9NWS9 450 aa23.71■■□□□ 1.39
CLK3-202ENST00000395066 MYH3P11055 1940 aa23.7■■□□□ 1.39
CLK3-202ENST00000395066 FGFR2P21802 821 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 BCAMP50895 628 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 NOSTRINQ8IVI9 506 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 DIS3L2Q8IYB7 885 aaKnown RBP23.7■■□□□ 1.38
CLK3-202ENST00000395066 TRMT44Q8IYL2 757 aaKnown RBP23.7■■□□□ 1.38
CLK3-202ENST00000395066 UTP14AQ9BVJ6 771 aaKnown RBP23.7■■□□□ 1.38
CLK3-202ENST00000395066 INTS13Q9NVM9 706 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 BTG4Q9NY30 223 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 FANCGO15287 622 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 KCNJ6P48051 423 aa23.7■■□□□ 1.38
CLK3-202ENST00000395066 UQCRFS1P1P0C7P4 283 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 TDO2P48775 406 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 FAM177A1Q8N128 213 aaPredicted RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms