RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 KCNJ6P48051 423 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 ADCK5Q3MIX3 580 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 FERMT3Q86UX7 667 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 PGBD1Q96JS3 809 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 GPR101Q96P66 508 aaPredicted RBP12.89□□□□□ -0.35
CUX1-204ENST00000393824 OSBPL5Q9H0X9 879 aaPredicted RBP12.89□□□□□ -0.35
CUX1-204ENST00000393824 FBXO3Q9UK99 471 aa12.89□□□□□ -0.35
CUX1-204ENST00000393824 SNW1Q13573 536 aaKnown RBP12.89□□□□□ -0.35
CUX1-204ENST00000393824 GEMIN8Q9NWZ8 242 aaKnown RBP12.89□□□□□ -0.35
CUX1-204ENST00000393824 COL11A2P13942 1736 aaPredicted RBP12.89□□□□□ -0.35
CUX1-204ENST00000393824 PSEN1P49768 467 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 GRAPQ13588 217 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 TXNRD3Q86VQ6 643 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 GRAPLQ8TC17 118 aaPredicted RBP12.88□□□□□ -0.35
CUX1-204ENST00000393824 RPGRQ92834 1020 aaKnown RBP12.88□□□□□ -0.35
CUX1-204ENST00000393824 TRERF1Q96PN7 1200 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 GPR108Q9NPR9 543 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 ARGLU1Q9NWB6 273 aaPredicted RBP12.88□□□□□ -0.35
CUX1-204ENST00000393824 IMPACTQ9P2X3 320 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 WWC3Q9ULE0 1092 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 TPCN1Q9ULQ1 816 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.88□□□□□ -0.358e-7■■□□□ 12.7
CUX1-204ENST00000393824 CTAGE5O15320 804 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 PHKA1P46020 1223 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 PTH1RQ03431 593 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 ARHGAP29Q52LW3 1261 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 E4F1Q66K89 784 aaPredicted RBP12.88□□□□□ -0.35
CUX1-204ENST00000393824 PRPF40BQ6NWY9 871 aaKnown RBP12.88□□□□□ -0.35
CUX1-204ENST00000393824 TMCO3Q6UWJ1 677 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 NECAB1Q8N987 351 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 MAP4K1Q92918 833 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 RASSF4Q9H2L5 321 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 TFIP11Q9UBB9 837 aaKnown RBP12.88□□□□□ -0.35
CUX1-204ENST00000393824 MROH5Q6ZUA9 1318 aa12.88□□□□□ -0.35
CUX1-204ENST00000393824 HOXA10P31260 410 aaPredicted RBP12.87□□□□□ -0.35
CUX1-204ENST00000393824 STX1AQ16623 288 aa12.87□□□□□ -0.35
CUX1-204ENST00000393824 DTNBO60941 627 aa12.87□□□□□ -0.35
CUX1-204ENST00000393824 BCAMP50895 628 aa12.87□□□□□ -0.35
CUX1-204ENST00000393824 PUM3Q15397 648 aaKnown RBP12.87□□□□□ -0.35
CUX1-204ENST00000393824 C11orf57Q6ZUT1 292 aaPredicted RBP12.87□□□□□ -0.35
CUX1-204ENST00000393824 BICD2Q8TD16 824 aa12.87□□□□□ -0.35
CUX1-204ENST00000393824 GPS2Q13227 327 aa12.86□□□□□ -0.35
CUX1-204ENST00000393824 TSGA10IPQ3SY00 556 aa12.86□□□□□ -0.35
CUX1-204ENST00000393824 CREB3L3Q68CJ9 461 aa12.86□□□□□ -0.35
CUX1-204ENST00000393824 SAMD1Q6SPF0 538 aaPredicted RBP12.86□□□□□ -0.35
CUX1-204ENST00000393824 PPP1R13BQ96KQ4 1090 aa12.86□□□□□ -0.35
CUX1-204ENST00000393824 ORC3Q9UBD5 711 aaPredicted RBP12.86□□□□□ -0.35
CUX1-204ENST00000393824 IQSEC3Q9UPP2 1182 aaPredicted RBP12.86□□□□□ -0.35
CUX1-204ENST00000393824 BECN2A8MW95 431 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 ATP5JP18859 108 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 MCAMP43121 646 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 GYG1P46976 350 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 DHX8Q14562 1220 aaKnown RBP12.85□□□□□ -0.35
CUX1-204ENST00000393824 AXDND1Q5T1B0 1012 aaPredicted RBP12.85□□□□□ -0.35
CUX1-204ENST00000393824 CCDC102BQ68D86 513 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 DHX40Q8IX18 779 aaKnown RBP12.85□□□□□ -0.35
CUX1-204ENST00000393824 LRRN4CLQ8ND94 238 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 NEK11Q8NG66 645 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 SRRTQ9BXP5 876 aaKnown RBP12.85□□□□□ -0.35
CUX1-204ENST00000393824 RBM8AQ9Y5S9 174 aaKnown RBP12.85□□□□□ -0.35
CUX1-204ENST00000393824 TPM1P09493 284 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 NOP2P46087 812 aaKnown RBP12.85□□□□□ -0.35
CUX1-204ENST00000393824 CTR9Q6PD62 1173 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 SYT10Q6XYQ8 523 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 KRBA2Q6ZNG9 492 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 LPIN2Q92539 896 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 UBXN4Q92575 508 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 SGIP1Q9BQI5 828 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 HMG20BQ9P0W2 317 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 AKAP2Q9Y2D5 859 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 A0A1B0GUL6 1792 aa12.85□□□□□ -0.35
CUX1-204ENST00000393824 TNNT3P45378 269 aaPredicted RBP12.84□□□□□ -0.35
CUX1-204ENST00000393824 GPSM2P81274 684 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 C2CD5Q86YS7 1000 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 RSPH14Q9UHP6 348 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 MYO1CO00159 1063 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 APPP05067 770 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 NBPF11Q86T75 865 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 SLC16A10Q8TF71 515 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 SMARCE1Q969G3 411 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 ZNF622Q969S3 477 aaKnown RBP eCLIP12.84□□□□□ -0.351e-7■■□□□ 13.1
CUX1-204ENST00000393824 RBM17Q96I25 401 aaKnown RBP12.84□□□□□ -0.35
CUX1-204ENST00000393824 ANO10Q9NW15 660 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 PSD3Q9NYI0 1048 aa12.84□□□□□ -0.35
CUX1-204ENST00000393824 ZNF219Q9P2Y4 722 aaPredicted RBP12.84□□□□□ -0.35
CUX1-204ENST00000393824 PHLPP2Q6ZVD8 1323 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 IRS2Q9Y4H2 1338 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 A0A0G2JLW4 131 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 GOLIM4O00461 696 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 SLC27A2O14975 620 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 KCNA3P22001 575 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 PDE6BP35913 854 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 PTGER2P43116 358 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 ETF1P62495 437 aaKnown RBP12.83□□□□□ -0.36
CUX1-204ENST00000393824 FKBP4Q02790 459 aaKnown RBP eCLIP12.83□□□□□ -0.36
CUX1-204ENST00000393824 ZSCAN26Q16670 478 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 BLOC1S2Q6QNY1 142 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 CCDC150Q8NCX0 1101 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 CRAMP1Q96RY5 1269 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 HAUS7Q99871 368 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms