RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 PIH1D3Q9NQM4 214 aaKnown RBP16.58■□□□□ 0.25
TCOF1-202ENST00000377797 KDM4FA0A1W2PPD8 638 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 TNNI2P48788 182 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 NKX1-1Q15270 411 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-202ENST00000377797 STAT6P42226 847 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 GOLGA6L1Q8N7Z2 621 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 CCDC112Q8NEF3 446 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 UBE2Q2Q8WVN8 375 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 TMC6Q7Z403 805 aa16.58■□□□□ 0.24
TCOF1-202ENST00000377797 GJD4Q96KN9 370 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-202ENST00000377797 DCAF8L1A6NGE4 600 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 AOPEPQ8N6M6 819 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 UBA5Q9GZZ9 404 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 EHMT1Q9H9B1 1298 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 KCNJ14Q9UNX9 436 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 TNKSO95271 1327 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 SEMA3EO15041 775 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 RXRBP28702 533 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 SCRN1Q12765 414 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 HSP90AA4PQ58FG1 418 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 BSDC1Q9NW68 430 aaPredicted RBP16.57■□□□□ 0.24
TCOF1-202ENST00000377797 TCP10Q12799 353 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 ZNF174Q15697 407 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 DOK7Q18PE1 504 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 GPCPD1Q9NPB8 672 aa16.57■□□□□ 0.24
TCOF1-202ENST00000377797 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.57■□□□□ 0.24
TCOF1-202ENST00000377797 TRAF1Q13077 416 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 NOM1Q5C9Z4 860 aaKnown RBP16.56■□□□□ 0.24
TCOF1-202ENST00000377797 C2CD5Q86YS7 1000 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 CPLX3Q8WVH0 158 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 MEGF6O75095 1541 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 PRKAB2O43741 272 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 TRMT1LQ7Z2T5 733 aaKnown RBP16.56■□□□□ 0.24
TCOF1-202ENST00000377797 CMTR1Q8N1G2 835 aaKnown RBP16.56■□□□□ 0.24
TCOF1-202ENST00000377797 TMEM63CQ9P1W3 806 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 TNNT3P45378 269 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-202ENST00000377797 RBSNQ9H1K0 784 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 UBR1Q8IWV7 1749 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 BBOX1O75936 387 aa16.56■□□□□ 0.24
TCOF1-202ENST00000377797 CT47A1Q5JQC4 288 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-202ENST00000377797 WDR78Q5VTH9 848 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 DYNLL1P63167 89 aaKnown RBP16.55■□□□□ 0.24
TCOF1-202ENST00000377797 TBC1D9BQ66K14 1250 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 FANCBQ8NB91 859 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 TSG101Q99816 390 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 VWA3AA6NCI4 1184 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 PPIP5K2O43314 1243 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 ATG9AQ7Z3C6 839 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 LCORLQ8N3X6 602 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 CAGE1Q8TC20 777 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 ARHGEF1Q92888 912 aaKnown RBP16.55■□□□□ 0.24
TCOF1-202ENST00000377797 USP40Q9NVE5 1235 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 ARGLU1Q9NWB6 273 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-202ENST00000377797 LARGE1O95461 756 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 LMOD1P29536 600 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-202ENST00000377797 VPS72Q15906 364 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 TEKT1Q969V4 418 aa16.55■□□□□ 0.24
TCOF1-202ENST00000377797 ZSCAN10Q96SZ4 725 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-202ENST00000377797 RRAGBQ5VZM2 374 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 DTHD1Q6ZMT9 781 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 SMIM5Q71RC9 77 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 PXDNLA1KZ92 1463 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 CYP2E1P05181 493 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-202ENST00000377797 MYSM1Q5VVJ2 828 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 PIK3AP1Q6ZUJ8 805 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 LUZP1Q86V48 1076 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 VPS54Q9P1Q0 977 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 FKBP15Q5T1M5 1219 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 KIAA0825Q8IV33 1275 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 SMARCC2Q8TAQ2 1214 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 ATP8A2Q9NTI2 1148 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 GSDMDP57764 484 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 ZNF445P59923 1031 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 CELF1Q92879 486 aaKnown RBP16.54■□□□□ 0.24
TCOF1-202ENST00000377797 ZNF830Q96NB3 372 aaPredicted RBP16.54■□□□□ 0.24
TCOF1-202ENST00000377797 MED23Q9ULK4 1368 aa16.54■□□□□ 0.24
TCOF1-202ENST00000377797 BTDP43251 543 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 SCNN1DP51172 638 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 LETM2Q2VYF4 491 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 SUPT20HQ8NEM7 779 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 LUC7LQ9NQ29 371 aaKnown RBP16.53■□□□□ 0.24
TCOF1-202ENST00000377797 RMND1Q9NWS8 449 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 KIF20AO95235 890 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 UBASH3AP57075 661 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 ARHGAP29Q52LW3 1261 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 USP28Q96RU2 1077 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 ELP1O95163 1332 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 MTIF2P46199 727 aaKnown RBP16.53■□□□□ 0.24
TCOF1-202ENST00000377797 PTPN14Q15678 1187 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 FGFR1OPO95684 399 aaKnown RBP16.53■□□□□ 0.24
TCOF1-202ENST00000377797 GRAPQ13588 217 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 CCDC186Q7Z3E2 898 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 GRAPLQ8TC17 118 aaPredicted RBP16.53■□□□□ 0.24
TCOF1-202ENST00000377797 TRMT1Q9NXH9 659 aaKnown RBP16.53■□□□□ 0.24
TCOF1-202ENST00000377797 MINPP1Q9UNW1 487 aa16.53■□□□□ 0.24
TCOF1-202ENST00000377797 ZMYM6O95789 1325 aa16.52■□□□□ 0.24
TCOF1-202ENST00000377797 SPDYE3A6NKU9 549 aa16.52■□□□□ 0.24
TCOF1-202ENST00000377797 GPS2Q13227 327 aa16.52■□□□□ 0.24
TCOF1-202ENST00000377797 APOA5Q6Q788 366 aa16.52■□□□□ 0.24
TCOF1-202ENST00000377797 IQUBQ8NA54 791 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms