RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ARAP2Q8WZ64 1704 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 HMGB1P09429 215 aaKnown RBP18.28■□□□□ 0.52
CCDC40-202ENST00000374876 POTEIP0CG38 1075 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 POTEJP0CG39 1038 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 RPS12P25398 132 aaKnown RBP18.28■□□□□ 0.52
CCDC40-202ENST00000374876 RASGRF1Q13972 1273 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 GRIK5Q16478 980 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 CCDC158Q5M9N0 1113 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 PI16Q6UXB8 463 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 Q6ZUG5 572 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 SAMD7Q7Z3H4 446 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 RNF214Q8ND24 703 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 DSCC1Q9BVC3 393 aa18.28■□□□□ 0.52
CCDC40-202ENST00000374876 ZNF646O15015 1829 aaPredicted RBP18.28■□□□□ 0.52
CCDC40-202ENST00000374876 RNF113AO15541 343 aaKnown RBP18.27■□□□□ 0.52
CCDC40-202ENST00000374876 LETM1O95202 739 aaPredicted RBP18.27■□□□□ 0.52
CCDC40-202ENST00000374876 FGD1P98174 961 aa18.27■□□□□ 0.52
CCDC40-202ENST00000374876 SCARF1Q14162 830 aa18.27■□□□□ 0.52
CCDC40-202ENST00000374876 EAPPQ56P03 285 aaPredicted RBP18.27■□□□□ 0.52
CCDC40-202ENST00000374876 TTC39AQ5SRH9 613 aa18.27■□□□□ 0.52
CCDC40-202ENST00000374876 COL1A1P02452 1464 aaPredicted RBP18.27■□□□□ 0.52
CCDC40-202ENST00000374876 H7C1D1 291 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 EGFRP00533 1210 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 USP17L8P0C7I0 530 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 LRRFIP1Q32MZ4 808 aaKnown RBP18.27■□□□□ 0.51
CCDC40-202ENST00000374876 SLFNL1Q499Z3 407 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 CDC37L1Q7L3B6 337 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 GTF3C6Q969F1 213 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 PDLIM2Q96JY6 352 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 DENND2AQ9ULE3 1009 aa18.27■□□□□ 0.51
CCDC40-202ENST00000374876 SCN4AP35499 1836 aa18.26■□□□□ 0.51
CCDC40-202ENST00000374876 MCAMP43121 646 aa18.26■□□□□ 0.51
CCDC40-202ENST00000374876 TBC1D10BQ4KMP7 808 aaPredicted RBP18.26■□□□□ 0.51
CCDC40-202ENST00000374876 ARID4AP29374 1257 aaPredicted RBP18.25■□□□□ 0.51
CCDC40-202ENST00000374876 KRT85P78386 507 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 MAST3O60307 1309 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 MYO3BQ8WXR4 1341 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 HIRAP54198 1017 aaPredicted RBP18.25■□□□□ 0.51
CCDC40-202ENST00000374876 FERMT3Q86UX7 667 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 ZSCAN30Q86W11 494 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 SPATA5Q8NB90 893 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 TRPM4Q8TD43 1214 aa18.25■□□□□ 0.51
CCDC40-202ENST00000374876 ADARB2Q9NS39 739 aaKnown RBP18.25■□□□□ 0.51
CCDC40-202ENST00000374876 SEMA3EO15041 775 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 UQCRFS1P1P0C7P4 283 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 HSPD1P10809 573 aaKnown RBP18.24■□□□□ 0.51
CCDC40-202ENST00000374876 FKBP1AP62942 108 aaKnown RBP18.24■□□□□ 0.51
CCDC40-202ENST00000374876 HS1BP3Q53T59 392 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 STOX1Q6ZVD7 989 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 DHX32Q7L7V1 743 aaKnown RBP18.24■□□□□ 0.51
CCDC40-202ENST00000374876 OGFOD1Q8N543 542 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 WDR66Q8TBY9 1149 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 BRF1Q92994 677 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 CLEC11AQ9Y240 323 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 MYH13Q9UKX3 1938 aa18.24■□□□□ 0.51
CCDC40-202ENST00000374876 FAM184AQ8NB25 1140 aa18.23■□□□□ 0.51
CCDC40-202ENST00000374876 TBC1D22AQ8WUA7 517 aa18.23■□□□□ 0.51
CCDC40-202ENST00000374876 TTF2Q9UNY4 1162 aaKnown RBP18.23■□□□□ 0.51
CCDC40-202ENST00000374876 ZNF280AP59817 542 aaPredicted RBP18.23■□□□□ 0.51
CCDC40-202ENST00000374876 LRRC2Q9BYS8 371 aa18.23■□□□□ 0.51
CCDC40-202ENST00000374876 MYOZ2Q9NPC6 264 aa18.23■□□□□ 0.51
CCDC40-202ENST00000374876 ABCF2Q9UG63 623 aa18.23■□□□□ 0.51
CCDC40-202ENST00000374876 PCDHAC2Q9Y5I4 1007 aa18.23■□□□□ 0.51
CCDC40-202ENST00000374876 PNMA8AQ86V59 439 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-202ENST00000374876 M0R2C6 588 aa18.22■□□□□ 0.51
CCDC40-202ENST00000374876 JAK2O60674 1132 aa18.22■□□□□ 0.51
CCDC40-202ENST00000374876 ZFYP08048 801 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-202ENST00000374876 MSNP26038 577 aaKnown RBP18.22■□□□□ 0.51
CCDC40-202ENST00000374876 PRDX5P30044 214 aa18.22■□□□□ 0.51
CCDC40-202ENST00000374876 USP50Q70EL3 339 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-202ENST00000374876 E7EWF7 191 aa18.21■□□□□ 0.51
CCDC40-202ENST00000374876 ZAP70P43403 619 aa18.21■□□□□ 0.51
CCDC40-202ENST00000374876 KIF4BQ2VIQ3 1234 aa18.21■□□□□ 0.51
CCDC40-202ENST00000374876 ZNF512BQ96KM6 892 aaPredicted RBP18.21■□□□□ 0.51
CCDC40-202ENST00000374876 HDAC9Q9UKV0 1011 aa18.21■□□□□ 0.51
CCDC40-202ENST00000374876 TOMM70O94826 608 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 OSBP2Q969R2 916 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 SCAND2PQ9GZW5 306 aaPredicted RBP18.2■□□□□ 0.5
CCDC40-202ENST00000374876 ELP1O95163 1332 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 H3BQV1 296 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 PFKFB2O60825 505 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 RBM5P52756 815 aaKnown RBP eCLIP18.2■□□□□ 0.5
CCDC40-202ENST00000374876 SCRN1Q12765 414 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 NBPF9Q3BBW0 867 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 IFFO2Q5TF58 517 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 FAM173BQ6P4H8 233 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 TTC6Q86TZ1 520 aa18.2■□□□□ 0.5
CCDC40-202ENST00000374876 LLPHQ9BRT6 129 aaKnown RBP18.2■□□□□ 0.5
CCDC40-202ENST00000374876 ASTN2O75129 1339 aaPredicted RBP18.19■□□□□ 0.5
CCDC40-202ENST00000374876 AKAP11Q9UKA4 1901 aa18.19■□□□□ 0.5
CCDC40-202ENST00000374876 ZBTB22O15209 634 aa18.19■□□□□ 0.5
CCDC40-202ENST00000374876 LDHBP07195 334 aaKnown RBP18.19■□□□□ 0.5
CCDC40-202ENST00000374876 EXOSC10Q01780 885 aaKnown RBP18.19■□□□□ 0.5
CCDC40-202ENST00000374876 CFAP100Q494V2 611 aa18.19■□□□□ 0.5
CCDC40-202ENST00000374876 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.19■□□□□ 0.5
CCDC40-202ENST00000374876 CTNNA3Q9UI47 895 aa18.19■□□□□ 0.5
CCDC40-202ENST00000374876 PDS5AQ29RF7 1337 aaKnown RBP18.19■□□□□ 0.5
CCDC40-202ENST00000374876 SALL1Q9NSC2 1324 aa18.19■□□□□ 0.5
CCDC40-202ENST00000374876 UVSSAQ2YD98 709 aa18.18■□□□□ 0.5
CCDC40-202ENST00000374876 MAP1SQ66K74 1059 aaPredicted RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms