RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SBNO1A3KN83 1393 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 INSRP06213 1382 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF790Q6PG37 636 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 IFT81Q8WYA0 676 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 CEP63Q96MT8 703 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 LMBRD1Q9NUN5 540 aa12.86□□□□□ -0.35
PTPRF-203ENST00000372407 CLTCQ00610 1675 aaKnown RBP12.86□□□□□ -0.35
PTPRF-203ENST00000372407 TLDC2A0PJX2 215 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 FANCCQ00597 558 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 PLCB3Q01970 1234 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 TUBB2AQ13885 445 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 TRIM14Q14142 442 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF174Q15697 407 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 CCDC6Q16204 474 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 CCDC121Q6ZUS5 278 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 CPLX4Q7Z7G2 160 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 DIS3L2Q8IYB7 885 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 RGS22Q8NE09 1264 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 PLBD2Q8NHP8 589 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 FAM227BQ96M60 508 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 MPHOSPH6Q99547 160 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 PAIP2Q9BPZ3 127 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 ZKSCAN3Q9BRR0 538 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 TUBB2BQ9BVA1 445 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 CBX8Q9HC52 389 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 MTRF1LQ9UGC7 380 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 ABCA6Q8N139 1617 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 LDHBP07195 334 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 U2AF2P26368 475 aaKnown RBP eCLIP12.85□□□□□ -0.359e-12■■□□□ 11.6
PTPRF-203ENST00000372407 CCT6AP40227 531 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF75DP51815 510 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 TM6SF1Q9BZW5 370 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 NCOA5Q9HCD5 579 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 COMMD10Q9Y6G5 202 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 KDM4FA0A1W2PPD8 638 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 CUTAO60888 179 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 MICALL1Q8N3F8 863 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 PPM1EQ8WY54 764 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 PLIN2Q99541 437 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 PNMA6EA0A0J9YXQ4 647 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 TRAF5O00463 557 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 SV2BQ7L1I2 683 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 FAM89AQ96GI7 184 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 ANKRD2Q9GZV1 360 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 TTF2Q9UNY4 1162 aaKnown RBP12.85□□□□□ -0.35
PTPRF-203ENST00000372407 ATP6V0A2Q9Y487 856 aa12.85□□□□□ -0.35
PTPRF-203ENST00000372407 MRPL12P52815 198 aaKnown RBP12.84□□□□□ -0.35
PTPRF-203ENST00000372407 TERF1P54274 439 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 CCDC65Q8IXS2 484 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 INO80Q9ULG1 1556 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-203ENST00000372407 BRD1O95696 1058 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 ZBTB16Q05516 673 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 TTC6Q86TZ1 520 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 FAM76AQ8TAV0 307 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 SREK1Q8WXA9 508 aaKnown RBP12.84□□□□□ -0.35
PTPRF-203ENST00000372407 TSGA10Q9BZW7 698 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 VPS16Q9H269 839 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 IMPACTQ9P2X3 320 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 HDAC9Q9UKV0 1011 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 RIOK3O14730 519 aaKnown RBP12.84□□□□□ -0.35
PTPRF-203ENST00000372407 LETM2Q2VYF4 491 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 PLA2R1Q13018 1463 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 ADGRB3O60242 1522 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 ARHGAP6O43182 974 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 GPAA1O43292 621 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 ZNF202O95125 648 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 FERP16591 822 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 RXRBP28702 533 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 CALCOCO2Q13137 446 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 DNAJC21Q5F1R6 531 aaKnown RBP12.84□□□□□ -0.35
PTPRF-203ENST00000372407 KLHDC4Q8TBB5 520 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 GTF3C6Q969F1 213 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 NOC4LQ9BVI4 516 aaKnown RBP12.84□□□□□ -0.35
PTPRF-203ENST00000372407 TFCP2L1Q9NZI6 479 aa12.84□□□□□ -0.35
PTPRF-203ENST00000372407 EEF2P13639 858 aaKnown RBP12.83□□□□□ -0.36
PTPRF-203ENST00000372407 NAP1L4Q99733 375 aaKnown RBP12.83□□□□□ -0.36
PTPRF-203ENST00000372407 NAPGQ99747 312 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-203ENST00000372407 MTUS1Q9ULD2 1270 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 DENND2AQ9ULE3 1009 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 SH3TC1Q8TE82 1336 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 POLR2DO15514 142 aaKnown RBP12.83□□□□□ -0.36
PTPRF-203ENST00000372407 BAG6P46379 1132 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 GSTA5Q7RTV2 222 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 MYRIPQ8NFW9 859 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 SELENOSQ9BQE4 189 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 NFE2L3Q9Y4A8 694 aa12.83□□□□□ -0.36
PTPRF-203ENST00000372407 MSL1Q68DK7 614 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 OTUD7BQ6GQQ9 843 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 CARD6Q9BX69 1037 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 V9GY48 417 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-203ENST00000372407 RIMS1Q86UR5 1692 aaKnown RBP12.82□□□□□ -0.36
PTPRF-203ENST00000372407 PDE4DQ08499 809 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 PPP2R5BQ15173 497 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 TMEM63CQ9P1W3 806 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 RNF17Q9BXT8 1623 aaKnown RBP12.82□□□□□ -0.36
PTPRF-203ENST00000372407 PARP1P09874 1014 aaKnown RBP12.82□□□□□ -0.36
PTPRF-203ENST00000372407 VWA3BQ502W6 1294 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 ZMYM4Q5VZL5 1548 aa12.82□□□□□ -0.36
PTPRF-203ENST00000372407 GADD45BO75293 160 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-203ENST00000372407 GJC1P36383 396 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms