RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 INTS5Q6P9B9 1019 aaKnown RBP9.16□□□□□ -0.94
VPS13A-201ENST00000355766 SLCO4C1Q6ZQN7 724 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 LDHDQ86WU2 507 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 C2CD5Q86YS7 1000 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 MKL2Q9ULH7 1088 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 NOD1Q9Y239 953 aa9.16□□□□□ -0.94
VPS13A-201ENST00000355766 AFDNP55196 1824 aaKnown RBP9.15□□□□□ -0.94
VPS13A-201ENST00000355766 VIRMAQ69YN4 1812 aaKnown RBP9.15□□□□□ -0.94
VPS13A-201ENST00000355766 IQCA1LA6NCM1 817 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 MSTNO14793 375 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 DDNO94850 711 aaPredicted RBP9.15□□□□□ -0.94
VPS13A-201ENST00000355766 HOXB4P17483 251 aaPredicted RBP9.15□□□□□ -0.94
VPS13A-201ENST00000355766 GTF2IP78347 998 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 NCOA4Q13772 614 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 EIF4A2Q14240 407 aaKnown RBP9.15□□□□□ -0.94
VPS13A-201ENST00000355766 ZNF530Q6P9A1 599 aaPredicted RBP9.15□□□□□ -0.94
VPS13A-201ENST00000355766 NGEFQ8N5V2 710 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 NFATC2IPQ8NCF5 419 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 SPOCK3Q9BQ16 436 aa9.15□□□□□ -0.94
VPS13A-201ENST00000355766 ADAMTSL1Q8N6G6 1762 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 COL11A2P13942 1736 aaPredicted RBP9.14□□□□□ -0.95
VPS13A-201ENST00000355766 DCDC2BA2VCK2 349 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 RASSF10A6NK89 507 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 H0YIN7 160 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 LZTS3O60299 673 aaPredicted RBP9.14□□□□□ -0.95
VPS13A-201ENST00000355766 SERPINB2P05120 415 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 ARAFP10398 606 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 PPP2R1AP30153 589 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 TNP2Q05952 138 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS13A-201ENST00000355766 YTHDC1Q96MU7 727 aaKnown RBP9.14□□□□□ -0.95
VPS13A-201ENST00000355766 ZIC5Q96T25 663 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 TAOK3Q9H2K8 898 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 POLKQ9UBT6 870 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 NARFQ9UHQ1 456 aa9.14□□□□□ -0.95
VPS13A-201ENST00000355766 CCDC85CA6NKD9 419 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 NEURL1BA8MQ27 555 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 BACH1O14867 736 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 C21orf2O43822 256 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 MAPTP10636 758 aaKnown RBP9.13□□□□□ -0.95
VPS13A-201ENST00000355766 EPXP11678 715 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 AMPD1P23109 780 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 MAP2K1Q02750 393 aaPredicted RBP9.13□□□□□ -0.95
VPS13A-201ENST00000355766 PLEKHO1Q53GL0 409 aaPredicted RBP9.13□□□□□ -0.95
VPS13A-201ENST00000355766 CC2D1BQ5T0F9 858 aaKnown RBP9.13□□□□□ -0.95
VPS13A-201ENST00000355766 LINC00114Q6XXX2 140 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 WWC1Q8IX03 1113 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 DNAJC10Q8IXB1 793 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 DEPDC4Q8N2C3 294 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 BTBD6Q96KE9 485 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 TAF1DQ9H5J8 278 aaPredicted RBP9.13□□□□□ -0.95
VPS13A-201ENST00000355766 ZNF358Q9NW07 568 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 ZDHHC3Q9NYG2 299 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 MRC1P22897 1456 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 FER1L6Q2WGJ9 1857 aa9.13□□□□□ -0.95
VPS13A-201ENST00000355766 DICER1Q9UPY3 1922 aaKnown RBP9.12□□□□□ -0.95
VPS13A-201ENST00000355766 KRBA1A5PL33 1030 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 PROCP04070 461 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 CD33P20138 364 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 COL8A1P27658 744 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 MTHFSP49914 203 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 AMOTQ4VCS5 1084 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 SCHIP1Q9P0W5 487 aaPredicted RBP9.12□□□□□ -0.95
VPS13A-201ENST00000355766 KLF15Q9UIH9 416 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 SCN7AQ01118 1682 aa9.12□□□□□ -0.95
VPS13A-201ENST00000355766 WDR33Q9C0J8 1336 aaKnown RBP9.11□□□□□ -0.95
VPS13A-201ENST00000355766 ANKRD31Q8N7Z5 1873 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 POM121CA8CG34 1229 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 USP17L5A8MUK1 530 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 KHNYNO15037 678 aaKnown RBP9.11□□□□□ -0.95
VPS13A-201ENST00000355766 CYP19A1P11511 503 aaPredicted RBP9.11□□□□□ -0.95
VPS13A-201ENST00000355766 TXLNAP40222 546 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 DEFB115Q30KQ5 88 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 C1orf141Q5JVX7 400 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 MORC1Q86VD1 984 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 ADAMTS19Q8TE59 1207 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 ZDHHC1Q8WTX9 485 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 ZNF622Q969S3 477 aaKnown RBP eCLIP9.11□□□□□ -0.95
VPS13A-201ENST00000355766 ZBTB1Q9Y2K1 713 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 LTBP1Q14766 1721 aa9.11□□□□□ -0.95
VPS13A-201ENST00000355766 SCN4AP35499 1836 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 RAD21O60216 631 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 PDE6BP35913 854 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 HNRNPUQ00839 825 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS13A-201ENST00000355766 CCDC184Q52MB2 194 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 EAPPQ56P03 285 aaPredicted RBP9.1□□□□□ -0.95
VPS13A-201ENST00000355766 SUV39H2Q9H5I1 410 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 GJA3Q9Y6H8 435 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 CCDC88AQ3V6T2 1871 aa9.1□□□□□ -0.95
VPS13A-201ENST00000355766 ZNF541Q9H0D2 1346 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 EPHA4P54764 986 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 SOGA3Q5TF21 947 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 PRR5LQ6MZQ0 368 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 PRPF40BQ6NWY9 871 aaKnown RBP9.09□□□□□ -0.95
VPS13A-201ENST00000355766 BICDL1Q6ZP65 573 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 CFAP53Q96M91 514 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 BRIP1Q9BX63 1249 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 HACL1Q9UJ83 578 aa9.09□□□□□ -0.95
VPS13A-201ENST00000355766 ABT1Q9ULW3 272 aaKnown RBP9.09□□□□□ -0.95
VPS13A-201ENST00000355766 ARFGEF2Q9Y6D5 1785 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms