RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 UBASH3AP57075 661 aa28.27■■■□□ 2.12
CPNE1-202ENST00000352393 ALX1Q15699 326 aa28.27■■■□□ 2.12
CPNE1-202ENST00000352393 CNNM1Q9NRU3 951 aa28.27■■■□□ 2.12
CPNE1-202ENST00000352393 WWC3Q9ULE0 1092 aa28.27■■■□□ 2.12
CPNE1-202ENST00000352393 KRBA2Q6ZNG9 492 aa28.26■■■□□ 2.11
CPNE1-202ENST00000352393 VSTM4Q8IW00 320 aa28.26■■■□□ 2.11
CPNE1-202ENST00000352393 KRT222Q8N1A0 295 aa28.26■■■□□ 2.11
CPNE1-202ENST00000352393 NID2Q14112 1375 aa28.26■■■□□ 2.11
CPNE1-202ENST00000352393 PHLPP2Q6ZVD8 1323 aa28.26■■■□□ 2.11
CPNE1-202ENST00000352393 TRIM29Q14134 588 aa28.25■■■□□ 2.11
CPNE1-202ENST00000352393 STRBPQ96SI9 672 aaKnown RBP28.25■■■□□ 2.11
CPNE1-202ENST00000352393 PHKA1P46020 1223 aa28.25■■■□□ 2.11
CPNE1-202ENST00000352393 HLFQ16534 295 aa28.25■■■□□ 2.11
CPNE1-202ENST00000352393 CCDC102BQ68D86 513 aa28.25■■■□□ 2.11
CPNE1-202ENST00000352393 TBC1D2BQ9UPU7 963 aa28.25■■■□□ 2.11
CPNE1-202ENST00000352393 ITGB4P16144 1822 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 PDE8BO95263 885 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 SERPINC1P01008 464 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 LIFRP42702 1097 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 ETF1P62495 437 aaKnown RBP28.24■■■□□ 2.11
CPNE1-202ENST00000352393 LONRF3Q496Y0 759 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 TMEM67Q5HYA8 995 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 ELOA2Q8IYF1 753 aaPredicted RBP28.24■■■□□ 2.11
CPNE1-202ENST00000352393 KCNH3Q9ULD8 1083 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.24■■■□□ 2.118e-7■□□□□ 11.3
CPNE1-202ENST00000352393 H2AFXP16104 143 aaPredicted RBP28.24■■■□□ 2.11
CPNE1-202ENST00000352393 GPTP24298 496 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 OLFM4Q6UX06 510 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 NFXL1Q6ZNB6 911 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 BRINP3Q76B58 766 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 LRRN4CLQ8ND94 238 aa28.24■■■□□ 2.11
CPNE1-202ENST00000352393 SYTL4Q96C24 671 aaPredicted RBP28.24■■■□□ 2.11
CPNE1-202ENST00000352393 UQCRFS1P1P0C7P4 283 aa28.23■■■□□ 2.11
CPNE1-202ENST00000352393 FOXP4Q8IVH2 680 aaPredicted RBP28.23■■■□□ 2.11
CPNE1-202ENST00000352393 MYL10Q9BUA6 226 aa28.23■■■□□ 2.11
CPNE1-202ENST00000352393 EPB41L4AQ9HCS5 686 aaPredicted RBP28.23■■■□□ 2.11
CPNE1-202ENST00000352393 ASAP1Q9ULH1 1129 aa28.23■■■□□ 2.11
CPNE1-202ENST00000352393 NUP98P52948 1817 aa28.23■■■□□ 2.11
CPNE1-202ENST00000352393 CFAP100Q494V2 611 aa28.22■■■□□ 2.11
CPNE1-202ENST00000352393 UBE2Q2LH0YL09 131 aa28.22■■■□□ 2.11
CPNE1-202ENST00000352393 FMNL1O95466 1100 aaPredicted RBP28.22■■■□□ 2.11
CPNE1-202ENST00000352393 CNNM3Q8NE01 707 aa28.22■■■□□ 2.11
CPNE1-202ENST00000352393 AIDAQ96BJ3 306 aa28.22■■■□□ 2.11
CPNE1-202ENST00000352393 ZNF446Q9NWS9 450 aa28.22■■■□□ 2.11
CPNE1-202ENST00000352393 PCDHA5Q9Y5H7 936 aa28.22■■■□□ 2.11
CPNE1-202ENST00000352393 STARD3NLO95772 234 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 ERCC6LQ2NKX8 1250 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 FCHSD1Q86WN1 690 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 KRI1Q8N9T8 703 aaKnown RBP28.21■■■□□ 2.11
CPNE1-202ENST00000352393 TMEM232C9JQI7 657 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 BMP6P22004 513 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 MDM2Q00987 491 aaPredicted RBP28.21■■■□□ 2.11
CPNE1-202ENST00000352393 SSRP1Q08945 709 aaKnown RBP28.21■■■□□ 2.11
CPNE1-202ENST00000352393 TRIM65Q6PJ69 517 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 NOSTRINQ8IVI9 506 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 SLC26A6Q9BXS9 759 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 INTS13Q9NVM9 706 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 FANCLQ9NW38 375 aa28.21■■■□□ 2.11
CPNE1-202ENST00000352393 IRS4O14654 1257 aaPredicted RBP28.2■■■□□ 2.1
CPNE1-202ENST00000352393 HOMER1Q86YM7 354 aa28.2■■■□□ 2.1
CPNE1-202ENST00000352393 STK11IPQ8N1F8 1099 aa28.2■■■□□ 2.1
CPNE1-202ENST00000352393 PIGBQ92521 554 aa28.2■■■□□ 2.1
CPNE1-202ENST00000352393 IGSF3O75054 1194 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 IFNAR1P17181 557 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 PDE4BQ07343 736 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 TMEM139Q8IV31 216 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 INCENPQ9NQS7 918 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 TAOK2Q9UL54 1235 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 SLC12A7Q9Y666 1083 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 TACC3Q9Y6A5 838 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 BCORQ6W2J9 1755 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 TOP1P11387 765 aaKnown RBP28.19■■■□□ 2.1
CPNE1-202ENST00000352393 HSPA2P54652 639 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 REXO1L1PQ8IX06 675 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 IFNL3Q8IZI9 196 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 NHSL1Q5SYE7 1610 aa28.19■■■□□ 2.1
CPNE1-202ENST00000352393 PATL2C9JE40 543 aaKnown RBP28.18■■■□□ 2.1
CPNE1-202ENST00000352393 SLFN14P0C7P3 912 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 FGFR2P21802 821 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 PUM3Q15397 648 aaKnown RBP28.18■■■□□ 2.1
CPNE1-202ENST00000352393 WASF1Q92558 559 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 ZSWIM5Q9P217 1185 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 DNAI1Q9UI46 699 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 IFIT3O14879 490 aaKnown RBP28.18■■■□□ 2.1
CPNE1-202ENST00000352393 FOXN1O15353 648 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 MMP1P03956 469 aa28.18■■■□□ 2.1
CPNE1-202ENST00000352393 FANCGO15287 622 aa28.17■■■□□ 2.1
CPNE1-202ENST00000352393 TOB1P50616 345 aaPredicted RBP28.17■■■□□ 2.1
CPNE1-202ENST00000352393 CTDSPL2Q05D32 466 aa28.17■■■□□ 2.1
CPNE1-202ENST00000352393 LPIN2Q92539 896 aa28.17■■■□□ 2.1
CPNE1-202ENST00000352393 NAPBQ9H115 298 aa28.17■■■□□ 2.1
CPNE1-202ENST00000352393 CNNM2Q9H8M5 875 aa28.17■■■□□ 2.1
CPNE1-202ENST00000352393 FBXO2Q9UK22 296 aaPredicted RBP28.17■■■□□ 2.1
CPNE1-202ENST00000352393 MBD4O95243 580 aa28.16■■■□□ 2.1
CPNE1-202ENST00000352393 TBX2Q13207 712 aaPredicted RBP28.16■■■□□ 2.1
CPNE1-202ENST00000352393 SOS2Q07890 1332 aaPredicted RBP28.16■■■□□ 2.1
CPNE1-202ENST00000352393 PDE8AO60658 829 aa28.16■■■□□ 2.1
CPNE1-202ENST00000352393 STRN4Q9NRL3 753 aa28.16■■■□□ 2.1
CPNE1-202ENST00000352393 MAN1B1Q9UKM7 699 aa28.16■■■□□ 2.1
CPNE1-202ENST00000352393 BTBD18B2RXH4 712 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms