RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.66□□□□□ -1.66
NEDD4-201ENST00000338963 CD248Q9HCU0 757 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 NDUFA13Q9P0J0 144 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 UBN2Q6ZU65 1347 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 BICDL2A1A5D9 508 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 ACADVLP49748 655 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 ALDH1L2Q3SY69 923 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 BICDL1Q6ZP65 573 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 MORC4Q8TE76 937 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 ATP6V0A1Q93050 837 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 RUNDC1Q96C34 613 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 AGBL1Q96MI9 1066 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 NSRP1Q9H0G5 558 aaKnown RBP4.66□□□□□ -1.66
NEDD4-201ENST00000338963 PCDHGC5Q9Y5F6 944 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 EFCAB5A4FU69 1503 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 SYNMO15061 1565 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 TTI1O43156 1089 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 FIBPO43427 364 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 DIAPH2O60879 1101 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 HSF2BPO75031 334 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 PARNO95453 639 aaKnown RBP4.66□□□□□ -1.66
NEDD4-201ENST00000338963 RPSAP08865 295 aaKnown RBP4.66□□□□□ -1.66
NEDD4-201ENST00000338963 CPA3P15088 417 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 MCCD1P59942 119 aaPredicted RBP4.66□□□□□ -1.66
NEDD4-201ENST00000338963 CCDC15Q0P6D6 951 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 GIMAP6Q6P9H5 292 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 TBCCD1Q9NVR7 557 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 CARD8Q9Y2G2 431 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 KIF24Q5T7B8 1368 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 AATKQ6ZMQ8 1374 aa4.66□□□□□ -1.66
NEDD4-201ENST00000338963 WDR46O15213 610 aaKnown RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 MGEA5O60502 916 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 SASH3O75995 380 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 PYGLP06737 847 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 IRAK1P51617 712 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 SGSM1Q2NKQ1 1148 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 SFMBT2Q5VUG0 894 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 ZBTB8BQ8NAP8 495 aaPredicted RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 FGD4Q96M96 766 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 API5Q9BZZ5 524 aaKnown RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 FAM184BQ9ULE4 1060 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 TTF2Q9UNY4 1162 aaKnown RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 MTRF1O75570 445 aaKnown RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 SMNDC1O75940 238 aaKnown RBP eCLIP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 KIF4AO95239 1232 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 POLR2EP19388 210 aaKnown RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 TTC22Q5TAA0 569 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 NUTM2DQ5VT03 806 aaPredicted RBP4.65□□□□□ -1.66
NEDD4-201ENST00000338963 CTTNBP2NLQ9P2B4 639 aa4.65□□□□□ -1.66
NEDD4-201ENST00000338963 ABCC11Q96J66 1382 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 ZFYP08048 801 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 EIF4BP23588 611 aaKnown RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 ADCY1Q08828 1119 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 SLC44A4Q53GD3 710 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 IFT81Q8WYA0 676 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 GBP5Q96PP8 586 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 BPIFA3Q9BQP9 254 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 SRCIN1Q9C0H9 1055 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 SCOCQ9UIL1 159 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 CFAP45Q9UL16 551 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 TTC21BQ7Z4L5 1316 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 CDHR2Q9BYE9 1310 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 CFAP65Q6ZU64 1925 aaKnown RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 MYOM2P54296 1465 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 TMEM110-MUSTN1A8MSY1 372 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 BAG3O95817 575 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 KCNA2P16389 499 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 ATP11AP98196 1134 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 MYSM1Q5VVJ2 828 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 ATF7IPQ6VMQ6 1270 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 BZW1Q7L1Q6 419 aaKnown RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 TMEM110Q86TL2 294 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC12Q8WUD4 166 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 IRGQQ8WZA9 623 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 SLC39A2Q9NP94 309 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 ZBTB40Q9NUA8 1239 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 ERBB3P21860 1342 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 GRIN2AQ12879 1464 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 IQCA1LA6NCM1 817 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 APAF1O14727 1248 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 STK10O94804 968 aaKnown RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 TRIM37O94972 964 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 CTCFP49711 727 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 HDLBPQ00341 1268 aaKnown RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 MPP3Q13368 585 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 SPIDRQ14159 915 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 PARP10Q53GL7 1025 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 DNAJC14Q6Y2X3 702 aaPredicted RBP4.65□□□□□ -1.67
NEDD4-201ENST00000338963 FAM186BQ8IYM0 893 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 RASSF8Q8NHQ8 419 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 EBF2Q9HAK2 575 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 HELLSQ9NRZ9 838 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 COMMD3-BMI1R4GMX3 469 aa4.65□□□□□ -1.67
NEDD4-201ENST00000338963 EPB41P11171 864 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 RPL13P26373 211 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 IKQ13123 557 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NNTQ13423 1086 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC174Q6PII3 467 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC125Q86Z20 511 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SYCP3Q8IZU3 236 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms