RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZBTB7AO95365 584 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 F13A1P00488 732 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 CNKSR1Q969H4 720 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 MYL10Q9BUA6 226 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 KRT23Q9C075 422 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 CNNM2Q9H8M5 875 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 TCHHQ07283 1943 aa21.66■■□□□ 1.06
USP39-201ENST00000323701 F8W031 263 aaPredicted RBP21.65■■□□□ 1.06
USP39-201ENST00000323701 PPP4CP60510 307 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 GSTO1P78417 241 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 TMEM67Q5HYA8 995 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 TMED8Q6PL24 325 aaPredicted RBP21.65■■□□□ 1.06
USP39-201ENST00000323701 TMX4Q9H1E5 349 aaPredicted RBP21.65■■□□□ 1.06
USP39-201ENST00000323701 GDPD2Q9HCC8 539 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 ATP8A2Q9NTI2 1148 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 PRPF40AO75400 957 aaKnown RBP21.65■■□□□ 1.06
USP39-201ENST00000323701 FDPSP14324 419 aaKnown RBP21.65■■□□□ 1.06
USP39-201ENST00000323701 KCNA3P22001 575 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 BTDP43251 543 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 FERMT3Q86UX7 667 aa21.65■■□□□ 1.06
USP39-201ENST00000323701 GZF1Q9H116 711 aaPredicted RBP21.65■■□□□ 1.06
USP39-201ENST00000323701 IFIT3O14879 490 aaKnown RBP21.64■■□□□ 1.06
USP39-201ENST00000323701 C21orf2O43822 256 aa21.64■■□□□ 1.06
USP39-201ENST00000323701 APOA5Q6Q788 366 aa21.64■■□□□ 1.06
USP39-201ENST00000323701 TBC1D22AQ8WUA7 517 aa21.64■■□□□ 1.06
USP39-201ENST00000323701 TGFBRAP1Q8WUH2 860 aa21.64■■□□□ 1.06
USP39-201ENST00000323701 TMEM87BQ96K49 555 aa21.64■■□□□ 1.06
USP39-201ENST00000323701 LLPHQ9BRT6 129 aaKnown RBP21.64■■□□□ 1.06
USP39-201ENST00000323701 MCM9Q9NXL9 1143 aa21.64■■□□□ 1.06
USP39-201ENST00000323701 GPR75-ASB3A0A0A6YYF3 556 aa21.64■■□□□ 1.05
USP39-201ENST00000323701 GSE1Q14687 1217 aa21.64■■□□□ 1.05
USP39-201ENST00000323701 SCN9AQ15858 1988 aa21.64■■□□□ 1.05
USP39-201ENST00000323701 FGRP09769 529 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 DPEP1P16444 411 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 FOSBP53539 338 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 CCDC144CPQ8IYA2 1237 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 SLC16A10Q8TF71 515 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 RNF41Q9H4P4 317 aaPredicted RBP21.63■■□□□ 1.05
USP39-201ENST00000323701 ADD1P35611 737 aaKnown RBP21.63■■□□□ 1.05
USP39-201ENST00000323701 RHBDL3P58872 404 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 FAM173BQ6P4H8 233 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 SGMS1Q86VZ5 419 aa21.63■■□□□ 1.05
USP39-201ENST00000323701 ATF5Q9Y2D1 282 aaPredicted RBP21.63■■□□□ 1.05
USP39-201ENST00000323701 CDK5RAP2Q96SN8 1893 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 LDHCP07864 332 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 CDC27P30260 824 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 USP5P45974 858 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 AOC3Q16853 763 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 MICU3Q86XE3 530 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 MAPKAPK5Q8IW41 473 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 EYA3Q99504 573 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.62■■□□□ 1.05
USP39-201ENST00000323701 DAGLAQ9Y4D2 1042 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 GAKO14976 1311 aa21.62■■□□□ 1.05
USP39-201ENST00000323701 GOLGA6L22H0YM25 854 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 BAG3O95817 575 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 LIFRP42702 1097 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 SBK1Q52WX2 424 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 FAM163AQ96GL9 167 aaPredicted RBP21.61■■□□□ 1.05
USP39-201ENST00000323701 FAM217BQ9NTX9 383 aaPredicted RBP21.61■■□□□ 1.05
USP39-201ENST00000323701 CNPY2Q9Y2B0 182 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 LAMB1P07942 1786 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 ADAMTSL1Q8N6G6 1762 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 IGSF3O75054 1194 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 DYNLL2Q96FJ2 89 aa21.61■■□□□ 1.05
USP39-201ENST00000323701 ARPP21Q9UBL0 812 aaPredicted RBP21.61■■□□□ 1.05
USP39-201ENST00000323701 RANBP6O60518 1105 aaKnown RBP21.6■■□□□ 1.05
USP39-201ENST00000323701 PDCP20941 246 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 SCNN1DP51172 638 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 NFXL1Q6ZNB6 911 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 CCDC125Q86Z20 511 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 SAP30BPQ9UHR5 308 aaKnown RBP21.6■■□□□ 1.05
USP39-201ENST00000323701 DLEC1Q9Y238 1755 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 G3V3G9 751 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 ECE2O60344 883 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 PLCD1P51178 756 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 DNM1Q05193 864 aaKnown RBP21.6■■□□□ 1.05
USP39-201ENST00000323701 SEC23AQ15436 765 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 DCAF8Q5TAQ9 597 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 C12orf60Q5U649 245 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 ESR2Q92731 530 aa21.6■■□□□ 1.05
USP39-201ENST00000323701 TTF2Q9UNY4 1162 aaKnown RBP21.6■■□□□ 1.05
USP39-201ENST00000323701 NMT2O60551 498 aa21.59■■□□□ 1.05
USP39-201ENST00000323701 FAM47AQ5JRC9 791 aa21.59■■□□□ 1.05
USP39-201ENST00000323701 PODNQ7Z5L7 613 aa21.59■■□□□ 1.05
USP39-201ENST00000323701 GPT2Q8TD30 523 aa21.59■■□□□ 1.05
USP39-201ENST00000323701 METAP2P50579 478 aaKnown RBP eCLIP21.58■■□□□ 1.052e-7■■■□□ 16.1
USP39-201ENST00000323701 TTLL6Q8N841 843 aa21.58■■□□□ 1.05
USP39-201ENST00000323701 ENAHQ8N8S7 591 aaPredicted RBP21.58■■□□□ 1.05
USP39-201ENST00000323701 FAM184AQ8NB25 1140 aa21.58■■□□□ 1.05
USP39-201ENST00000323701 NOL10Q9BSC4 688 aaKnown RBP21.58■■□□□ 1.05
USP39-201ENST00000323701 GJB4Q9NTQ9 266 aa21.58■■□□□ 1.05
USP39-201ENST00000323701 TNKSO95271 1327 aa21.58■■□□□ 1.05
USP39-201ENST00000323701 UBE2Q2LH0YL09 131 aa21.58■■□□□ 1.04
USP39-201ENST00000323701 ZBTB43O43298 467 aa21.58■■□□□ 1.04
USP39-201ENST00000323701 WTAPQ15007 396 aa21.58■■□□□ 1.04
USP39-201ENST00000323701 TEX11Q8IYF3 940 aa21.58■■□□□ 1.04
USP39-201ENST00000323701 PCDHAC2Q9Y5I4 1007 aa21.58■■□□□ 1.04
USP39-201ENST00000323701 GADD45BO75293 160 aaPredicted RBP21.57■■□□□ 1.04
USP39-201ENST00000323701 HMGN5P82970 282 aaKnown RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms