RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 VEGFBP49765 207 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 RGS3P49796 1198 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 SUZ12Q15022 739 aaKnown RBP8□□□□□ -1.13
DEPDC4-201ENST00000299185 PI16Q6UXB8 463 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 BSDC1Q9NW68 430 aaPredicted RBP8□□□□□ -1.13
DEPDC4-201ENST00000299185 ANKIB1Q9P2G1 1089 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 DBNLQ9UJU6 430 aaKnown RBP8□□□□□ -1.13
DEPDC4-201ENST00000299185 NSFL1CQ9UNZ2 370 aaKnown RBP8□□□□□ -1.13
DEPDC4-201ENST00000299185 HDAC5Q9UQL6 1122 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 WASF2Q9Y6W5 498 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 XDHP47989 1333 aa8□□□□□ -1.13
DEPDC4-201ENST00000299185 A0A1B0GUL7 405 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 TESPA1A2RU30 521 aaPredicted RBP7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 C6orf229H3BNL8 230 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 GPR37O15354 613 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 FGFR2P21802 821 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 PHKA1P46020 1223 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 KCNJ4P48050 445 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 TIMM10P62072 90 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 SCARF1Q14162 830 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 AOC3Q16853 763 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 FER1L6Q2WGJ9 1857 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 CCDC93Q567U6 631 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 DPP8Q6V1X1 898 aaPredicted RBP7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 TRIM46Q7Z4K8 759 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 TIAM2Q8IVF5 1701 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 SP8Q8IXZ3 490 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 TNS4Q8IZW8 715 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 TBC1D16Q8TBP0 767 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 EDC3Q96F86 508 aaKnown RBP7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 NEUROD6Q96NK8 337 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 LRRCC1Q9C099 1032 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 CEP126Q9P2H0 1117 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 GGA1Q9UJY5 639 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 ADAMTSL1Q8N6G6 1762 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 ZNF804BA4D1E1 1349 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 MROH5Q6ZUA9 1318 aa7.99□□□□□ -1.13
DEPDC4-201ENST00000299185 BBOX1O75936 387 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 PDE8BO95263 885 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 MAP4K4O95819 1239 aaPredicted RBP7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 ALDH1B1P30837 517 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 USP46P62068 366 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 NUCB1Q02818 461 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 PUM3Q15397 648 aaKnown RBP7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 COL13A1Q5TAT6 717 aaPredicted RBP7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 CENPQQ7L2Z9 268 aaPredicted RBP7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 MPNDQ8N594 471 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 KIF1BPQ96EK5 621 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 XAGE2Q96GT9 111 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 MXD3Q9BW11 206 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 DBNDD1Q9H9R9 158 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 SNRKQ9NRH2 765 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 ZNF646O15015 1829 aaPredicted RBP7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 SALL3Q9BXA9 1300 aa7.98□□□□□ -1.13
DEPDC4-201ENST00000299185 CHD4Q14839 1912 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 SCN9AQ15858 1988 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 PPIP5K2O43314 1243 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 RAB11FIP3O75154 756 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 KDM4AO75164 1064 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 CHGBP05060 677 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 BMP1P13497 986 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 SLC5A1P13866 664 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 CHAF1AQ13111 956 aaPredicted RBP7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 AAMPQ13685 434 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 GPR162Q16538 588 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 ARHGAP27Q6ZUM4 889 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 CHD1LQ86WJ1 897 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 EHBP1Q8NDI1 1231 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 GCC1Q96CN9 775 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 TAOK3Q9H2K8 898 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 KCNQ5Q9NR82 932 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 ZNF541Q9H0D2 1346 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 MED23Q9ULK4 1368 aa7.97□□□□□ -1.13
DEPDC4-201ENST00000299185 YDJCA8MPS7 323 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 SIAH2O43255 324 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 IFIT2P09913 472 aaKnown RBP7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 ATP2B4P23634 1241 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 FKBP4Q02790 459 aaKnown RBP eCLIP7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 GRIK5Q16478 980 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 SLFNL1Q499Z3 407 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 ERICH6BQ5W0A0 696 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 ERC1Q8IUD2 1116 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 ANKRD2Q9GZV1 360 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 PODXL2Q9NZ53 605 aa7.96□□□□□ -1.14
DEPDC4-201ENST00000299185 SHTN1A0MZ66 631 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 ECE2O60344 883 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 IFIT1P09914 478 aaKnown RBP7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 GSPT1P15170 499 aaKnown RBP7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 CD46P15529 392 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 MX1P20591 662 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 IARSP41252 1262 aaKnown RBP7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 MCAMP43121 646 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 RASGRF1Q13972 1273 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 WASHC4Q2M389 1173 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 HSP90AB4PQ58FF6 505 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 TTC39AQ5SRH9 613 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 CCDC102BQ68D86 513 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 TMC4Q7Z404 712 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 PLEKHM2Q8IWE5 1019 aa7.95□□□□□ -1.14
DEPDC4-201ENST00000299185 CLASRPQ8N2M8 674 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms