RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LMBRD1Q9NUN5 540 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 IMPACTQ9P2X3 320 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 FYCO1Q9BQS8 1478 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 TSPY2A6NKD2 308 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 TSPY3P0CV98 308 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 TSPY8P0CW00 308 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 TSPY1Q01534 308 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 ATP2B3Q16720 1220 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 CUL5Q93034 780 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 VPS16Q9H269 839 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 CXorf56Q9H5V9 222 aa13.07□□□□□ -0.32
SHROOM3-201ENST00000296043 PPP1R12AO14974 1030 aaPredicted RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 SUN1O94901 812 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 DYNC1I2Q13409 638 aaKnown RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 LONP1P36776 959 aaKnown RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 NFE2L2Q16236 605 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 SNX16P57768 344 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 DPH6Q7L8W6 267 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 MKNK2Q9HBH9 465 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 IFIT1P09914 478 aaKnown RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 ESRRGP62508 458 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 ECHDC1Q9NTX5 307 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 SETD1BQ9UPS6 1966 aaKnown RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 ADKP55263 362 aaKnown RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 ANKRD36BQ8N2N9 1353 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 ZMYND10O75800 440 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 IFNAR2P48551 515 aa13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 PLEKHO1Q53GL0 409 aaPredicted RBP13.06□□□□□ -0.32
SHROOM3-201ENST00000296043 ERCC6Q03468 1493 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 AK2P54819 239 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 IRX1P78414 480 aaPredicted RBP13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 TERF2Q15554 542 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 BEND3Q5T5X7 828 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 KIAA2013Q8IYS2 634 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 VPS37BQ9H9H4 285 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 SAR1BQ9Y6B6 198 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 TRIM14Q14142 442 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 TSC22D4Q9Y3Q8 395 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 SKIP12755 728 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 CCDC93Q567U6 631 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 ZNF280CQ8ND82 737 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 LRRC27Q9C0I9 530 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 RTN1Q16799 776 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 ERMNQ8TAM6 284 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 LRRC9Q6ZRR7 1453 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 AFAP1L2Q8N4X5 818 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 EXOC4Q96A65 974 aa13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 XPO4Q9C0E2 1151 aaKnown RBP13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 PAIP2BQ9ULR5 123 aaKnown RBP13.05□□□□□ -0.32
SHROOM3-201ENST00000296043 BTBD11A6QL63 1104 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 PPP2R5CQ13362 524 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 SCYL3Q8IZE3 742 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 FLCNQ8NFG4 579 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 BCAP29Q9UHQ4 241 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 SERPINI2O75830 405 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 SLC12A5Q9H2X9 1139 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 RBM8AQ9Y5S9 174 aaKnown RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 PTPROQ16827 1216 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 NCOA7Q8NI08 942 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 IFIH1Q9BYX4 1025 aaKnown RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 TXLNGQ9NUQ3 528 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 FAM13AO94988 1023 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 S100BP04271 92 aaPredicted RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 HDAC1Q13547 482 aaPredicted RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 MAP7D3Q8IWC1 876 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 PPP4R1Q8TF05 950 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 TMEM63CQ9P1W3 806 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 CCDC159P0C7I6 412 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 PNMA6AP0CW24 399 aaPredicted RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 NXNQ6DKJ4 435 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 NOP53Q9NZM5 478 aaKnown RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 CD2APQ9Y5K6 639 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 CLCN6P51797 869 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 ZSCAN29Q8IWY8 852 aaPredicted RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 SCHIP1Q9P0W5 487 aaPredicted RBP13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 CECR2Q9BXF3 1484 aa13.04□□□□□ -0.32
SHROOM3-201ENST00000296043 ZBTB43O43298 467 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 CPA1P15085 419 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 WDR78Q5VTH9 848 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 MFSD6Q6ZSS7 791 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 CCDC105Q8IYK2 499 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 SEPT10Q9P0V9 454 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 FBXO38Q6PIJ6 1188 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 AKNAD1Q5T1N1 836 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 NBPF3Q9H094 633 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 EEF1B2P24534 225 aaKnown RBP13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 RRS1Q15050 365 aaKnown RBP13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 RSPH3Q86UC2 560 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 NLRP6P59044 892 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 PPP2R5DQ14738 602 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 NCAPGQ9BPX3 1015 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 OSBPL1AQ9BXW6 950 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 KDM1AO60341 852 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 UHMK1Q8TAS1 419 aaKnown RBP13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 MAPK8IP1Q9UQF2 711 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 ASIC2Q16515 512 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 RILPL1Q5EBL4 403 aa13.03□□□□□ -0.32
SHROOM3-201ENST00000296043 LZTS1Q9Y250 596 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms