RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ANGEL1Q9UNK9 670 aaKnown RBP19.4■□□□□ 0.7
USP4-201ENST00000265560 CNPY2Q9Y2B0 182 aa19.4■□□□□ 0.7
USP4-201ENST00000265560 FAM47AQ5JRC9 791 aa19.4■□□□□ 0.7
USP4-201ENST00000265560 CMTR1Q8N1G2 835 aaKnown RBP19.4■□□□□ 0.7
USP4-201ENST00000265560 IGDCC4Q8TDY8 1250 aa19.4■□□□□ 0.7
USP4-201ENST00000265560 GOLGA6L22H0YM25 854 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 NMT2O60551 498 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 BTDP43251 543 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 FAM184AQ8NB25 1140 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 DYNLL2Q96FJ2 89 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 BAZ2BQ9UIF8 2168 aaKnown RBP19.39■□□□□ 0.69
USP4-201ENST00000265560 PDS5AQ29RF7 1337 aaKnown RBP19.39■□□□□ 0.69
USP4-201ENST00000265560 UBE2Q2LH0YL09 131 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 AOC3Q16853 763 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 LMBRD1Q9NUN5 540 aa19.39■□□□□ 0.69
USP4-201ENST00000265560 DDX49Q9Y6V7 483 aaKnown RBP19.39■□□□□ 0.69
USP4-201ENST00000265560 SH2B2O14492 632 aaPredicted RBP19.38■□□□□ 0.69
USP4-201ENST00000265560 F13A1P00488 732 aa19.38■□□□□ 0.69
USP4-201ENST00000265560 PCDHAC2Q9Y5I4 1007 aa19.38■□□□□ 0.69
USP4-201ENST00000265560 DUOX1Q9NRD9 1551 aa19.38■□□□□ 0.69
USP4-201ENST00000265560 DNM1Q05193 864 aaKnown RBP19.38■□□□□ 0.69
USP4-201ENST00000265560 GSE1Q14687 1217 aa19.38■□□□□ 0.69
USP4-201ENST00000265560 TMC4Q7Z404 712 aa19.38■□□□□ 0.69
USP4-201ENST00000265560 R3HDM1Q15032 1099 aaKnown RBP19.38■□□□□ 0.69
USP4-201ENST00000265560 ZNF274Q96GC6 653 aaPredicted RBP19.38■□□□□ 0.69
USP4-201ENST00000265560 LY9Q9HBG7 655 aa19.38■□□□□ 0.69
USP4-201ENST00000265560 FIBPO43427 364 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 DPEP1P16444 411 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 SLC44A5Q8NCS7 719 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 IL27Q8NEV9 243 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 STAG1Q8WVM7 1258 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 RTFDC1Q9BY42 306 aaPredicted RBP19.37■□□□□ 0.69
USP4-201ENST00000265560 PSDA5PKW4 1024 aaPredicted RBP19.37■□□□□ 0.69
USP4-201ENST00000265560 COA1Q9GZY4 146 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 TTF2Q9UNY4 1162 aaKnown RBP19.37■□□□□ 0.69
USP4-201ENST00000265560 SALL1Q9NSC2 1324 aa19.37■□□□□ 0.69
USP4-201ENST00000265560 GADD45BO75293 160 aaPredicted RBP19.36■□□□□ 0.69
USP4-201ENST00000265560 CDC27P30260 824 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 KIAA0825Q8IV33 1275 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 PHKBQ93100 1093 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 RGPD3A6NKT7 1758 aaPredicted RBP19.36■□□□□ 0.69
USP4-201ENST00000265560 RGPD4Q7Z3J3 1758 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 CPLX1O14810 134 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 PICALMQ13492 652 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 APOA5Q6Q788 366 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 CLEC17AQ6ZS10 378 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 NUP133Q8WUM0 1156 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 AIFM3Q96NN9 605 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 MROH7-TTC4A0A0A0MT08 1334 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 H3BQV1 296 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 FDPSP14324 419 aaKnown RBP19.36■□□□□ 0.69
USP4-201ENST00000265560 PLCD1P51178 756 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 IFFO2Q5TF58 517 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 STYK1Q6J9G0 422 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 NOL10Q9BSC4 688 aaKnown RBP19.36■□□□□ 0.69
USP4-201ENST00000265560 KRT23Q9C075 422 aa19.36■□□□□ 0.69
USP4-201ENST00000265560 TFIP11Q9UBB9 837 aaKnown RBP19.36■□□□□ 0.69
USP4-201ENST00000265560 ZMYM6O95789 1325 aa19.35■□□□□ 0.69
USP4-201ENST00000265560 LTBP1Q14766 1721 aa19.35■□□□□ 0.69
USP4-201ENST00000265560 CNKSR1Q969H4 720 aa19.35■□□□□ 0.69
USP4-201ENST00000265560 LRRC37AA6NMS7 1700 aa19.35■□□□□ 0.69
USP4-201ENST00000265560 CNNM2Q9H8M5 875 aa19.35■□□□□ 0.69
USP4-201ENST00000265560 RBM27Q9P2N5 1060 aaKnown RBP19.35■□□□□ 0.69
USP4-201ENST00000265560 BAG3O95817 575 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 SLURP2P0DP57 97 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 METAP2P50579 478 aaKnown RBP eCLIP19.34■□□□□ 0.69
USP4-201ENST00000265560 USP48Q86UV5 1035 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 TEX11Q8IYF3 940 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 UBAC1Q9BSL1 405 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 SLC12A7Q9Y666 1083 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 CCDC69A6NI79 296 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 GSTO1P78417 241 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 SMARCC2Q8TAQ2 1214 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 GPT2Q8TD30 523 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 C7orf43Q8WVR3 580 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 MTMR7Q9Y216 660 aa19.34■□□□□ 0.69
USP4-201ENST00000265560 ZBTB43O43298 467 aa19.33■□□□□ 0.69
USP4-201ENST00000265560 CEBPZQ03701 1054 aaKnown RBP19.33■□□□□ 0.69
USP4-201ENST00000265560 WTAPQ15007 396 aa19.33■□□□□ 0.69
USP4-201ENST00000265560 RNF41Q9H4P4 317 aaPredicted RBP19.33■□□□□ 0.69
USP4-201ENST00000265560 ATP8A2Q9NTI2 1148 aa19.33■□□□□ 0.69
USP4-201ENST00000265560 DAGLAQ9Y4D2 1042 aa19.33■□□□□ 0.69
USP4-201ENST00000265560 TNKSO95271 1327 aa19.33■□□□□ 0.68
USP4-201ENST00000265560 ECE2O60344 883 aa19.33■□□□□ 0.68
USP4-201ENST00000265560 LDHCP07864 332 aa19.33■□□□□ 0.68
USP4-201ENST00000265560 CACNB3P54284 484 aa19.33■□□□□ 0.68
USP4-201ENST00000265560 EVCP57679 992 aa19.33■□□□□ 0.68
USP4-201ENST00000265560 ILDR1Q86SU0 546 aaPredicted RBP19.33■□□□□ 0.68
USP4-201ENST00000265560 ESR2Q92731 530 aa19.33■□□□□ 0.68
USP4-201ENST00000265560 POLR3DP05423 398 aaPredicted RBP19.32■□□□□ 0.68
USP4-201ENST00000265560 CAVIN1Q6NZI2 390 aaKnown RBP19.32■□□□□ 0.68
USP4-201ENST00000265560 TMEM87BQ96K49 555 aa19.32■□□□□ 0.68
USP4-201ENST00000265560 ORC3Q9UBD5 711 aaPredicted RBP19.32■□□□□ 0.68
USP4-201ENST00000265560 SCN9AQ15858 1988 aa19.32■□□□□ 0.68
USP4-201ENST00000265560 KCNA3P22001 575 aa19.32■□□□□ 0.68
USP4-201ENST00000265560 ERICH2A1L162 156 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 GOLGA8AA7E2F4 631 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 TTLL6Q8N841 843 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 TBC1D22AQ8WUA7 517 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 EYA3Q99504 573 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms