RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 HDAC9Q9UKV0 1011 aa12.1□□□□□ -0.47
CD44-201ENST00000263398 ARHGEF10O15013 1369 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 ATP2A1O14983 1001 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 CFAP58Q5T655 872 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 C6orf163Q5TEZ5 329 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 IMPG2Q9BZV3 1241 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 GRIPAP1Q4V328 841 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 FBF1Q8TES7 1133 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 GTF3C6Q969F1 213 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 ZNF496Q96IT1 587 aaPredicted RBP12.09□□□□□ -0.47
CD44-201ENST00000263398 IGSF3O75054 1194 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 PDE4DQ08499 809 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 LPIN2Q92539 896 aa12.09□□□□□ -0.47
CD44-201ENST00000263398 KIF4AO95239 1232 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 A1BGP04217 495 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 TTC38Q5R3I4 469 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 CYP26C1Q6V0L0 522 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 C17orf53Q8N3J3 647 aaPredicted RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 IFT81Q8WYA0 676 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 CARD6Q9BX69 1037 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 SYNCQ9H7C4 482 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 PODXL2Q9NZ53 605 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 CTNND2Q9UQB3 1225 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 PREX2Q70Z35 1606 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 CNNM4Q6P4Q7 775 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 PIK3AP1Q6ZUJ8 805 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 TICAM2Q86XR7 235 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 TMTC1Q8IUR5 882 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 ANKS4BQ8N8V4 417 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 IPO4Q8TEX9 1081 aaKnown RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 TTC14Q96N46 770 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 MPHOSPH6Q99547 160 aaKnown RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 SYNRGQ9UMZ2 1314 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 SMAP1Q8IYB5 467 aaPredicted RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 CSGALNACT2Q8N6G5 542 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 OTUD6BQ8N6M0 293 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 FAM76AQ8TAV0 307 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 IQCGQ9H095 443 aaKnown RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 E7EWF7 191 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 TTLL12Q14166 644 aaPredicted RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 PPP1R14CQ8TAE6 165 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 MTRF1LQ9UGC7 380 aaKnown RBP12.08□□□□□ -0.48
CD44-201ENST00000263398 NDUFB9Q9Y6M9 179 aa12.08□□□□□ -0.48
CD44-201ENST00000263398 ZEB2O60315 1214 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 PAK1Q13153 545 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 MYSM1Q5VVJ2 828 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 ADALQ6DHV7 355 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 TCHPQ9BT92 498 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 KDM5CP41229 1560 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 IBTKQ9P2D0 1353 aaPredicted RBP12.07□□□□□ -0.48
CD44-201ENST00000263398 HIBADHP31937 336 aaKnown RBP12.07□□□□□ -0.48
CD44-201ENST00000263398 KRT9P35527 623 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 VWA3BQ502W6 1294 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 TEX11Q8IYF3 940 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 ZNF274Q96GC6 653 aaPredicted RBP12.07□□□□□ -0.48
CD44-201ENST00000263398 PALD1Q9ULE6 856 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 NEURL1BA8MQ27 555 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 DTNBO60941 627 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 HSPA2P54652 639 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 POSTNQ15063 836 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 PHKBQ93100 1093 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 EAF2Q96CJ1 260 aaPredicted RBP12.07□□□□□ -0.48
CD44-201ENST00000263398 NUP58Q9BVL2 599 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 MTMR6Q9Y217 621 aa12.07□□□□□ -0.48
CD44-201ENST00000263398 PRDM1O75626 825 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 LTKP29376 864 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 CCDC121Q6ZUS5 278 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 RGS22Q8NE09 1264 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 ZSWIM6Q9HCJ5 1215 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 PLXNC1O60486 1568 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 GIGYF1O75420 1035 aaPredicted RBP12.06□□□□□ -0.48
CD44-201ENST00000263398 ZAP70P43403 619 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 RAPGEF1Q13905 1077 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 CPLX4Q7Z7G2 160 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 ATP6V0A2Q9Y487 856 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 TLDC2A0PJX2 215 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 MICALL1Q8N3F8 863 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 IL17REQ8NFR9 667 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 MTUS1Q9ULD2 1270 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 MAPK8IP1Q9UQF2 711 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 ZNF521Q96K83 1311 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 ELF2Q15723 593 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 DNAJC21Q5F1R6 531 aaKnown RBP12.06□□□□□ -0.48
CD44-201ENST00000263398 ORAI2Q96SN7 254 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 MYL10Q9BUA6 226 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 KIAA1468Q9P260 1216 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 JAG2Q9Y219 1238 aa12.06□□□□□ -0.48
CD44-201ENST00000263398 ZNF500O60304 480 aaPredicted RBP12.05□□□□□ -0.48
CD44-201ENST00000263398 PLCB3Q01970 1234 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 PTH1RQ03431 593 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 CALCOCO2Q13137 446 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 EDC3Q96F86 508 aaKnown RBP12.05□□□□□ -0.48
CD44-201ENST00000263398 DCAF17Q5H9S7 520 aaPredicted RBP12.05□□□□□ -0.48
CD44-201ENST00000263398 CCDC26Q8TAB7 109 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 PAIP2Q9BPZ3 127 aaKnown RBP12.05□□□□□ -0.48
CD44-201ENST00000263398 GLT8D2Q9H1C3 349 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 ZNF532Q9HCE3 1301 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 CETN3O15182 167 aa12.05□□□□□ -0.48
CD44-201ENST00000263398 EEF2P13639 858 aaKnown RBP12.05□□□□□ -0.48
CD44-201ENST00000263398 CERS3Q8IU89 383 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms