RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 NLRP12P59046 1061 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 CFAP100Q494V2 611 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 ATL3Q6DD88 541 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 KIF6Q6ZMV9 814 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 FBXO41Q8TF61 875 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 APPBP2Q92624 585 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 FEZ1Q99689 392 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 DHX16O60231 1041 aaKnown RBP11.6□□□□□ -0.55
LIG3-201ENST00000262327 SLU7O95391 586 aaKnown RBP11.6□□□□□ -0.55
LIG3-201ENST00000262327 IFIT5Q13325 482 aaKnown RBP11.6□□□□□ -0.55
LIG3-201ENST00000262327 KRT40Q6A162 431 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 SHC4Q6S5L8 630 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 LDHAL6AQ6ZMR3 332 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 ZKSCAN3Q9BRR0 538 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 DNAI1Q9UI46 699 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 YEATS4O95619 227 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 GSDMDP57764 484 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 TRDNQ13061 729 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 RGS22Q8NE09 1264 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 OSBPL5Q9H0X9 879 aaPredicted RBP11.6□□□□□ -0.55
LIG3-201ENST00000262327 EPC1Q9H2F5 836 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 GREM2Q9H772 168 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 CCDC87Q9NVE4 849 aa11.6□□□□□ -0.55
LIG3-201ENST00000262327 KAT6BQ8WYB5 2073 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 UBASH3AP57075 661 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 ZNF827Q17R98 1081 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 RRP12Q5JTH9 1297 aaKnown RBP11.59□□□□□ -0.55
LIG3-201ENST00000262327 UTP14AQ9BVJ6 771 aaKnown RBP11.59□□□□□ -0.55
LIG3-201ENST00000262327 HSD3B7Q9H2F3 369 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 PIH1D3Q9NQM4 214 aaKnown RBP11.59□□□□□ -0.55
LIG3-201ENST00000262327 CNNM1Q9NRU3 951 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 TOMM22Q9NS69 142 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 GRIN1Q05586 938 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 CTDSPL2Q05D32 466 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 TRIM28Q13263 835 aaKnown RBP11.59□□□□□ -0.55
LIG3-201ENST00000262327 HLFQ16534 295 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 ZNF397Q8NF99 534 aaPredicted RBP11.59□□□□□ -0.55
LIG3-201ENST00000262327 WWC3Q9ULE0 1092 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 MAP3K15Q6ZN16 1313 aa11.59□□□□□ -0.55
LIG3-201ENST00000262327 CMA1P23946 247 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 EVCP57679 992 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 LONRF3Q496Y0 759 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 INTS5Q6P9B9 1019 aaKnown RBP11.58□□□□□ -0.55
LIG3-201ENST00000262327 BRAPQ7Z569 592 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 FOXP4Q8IVH2 680 aaPredicted RBP11.58□□□□□ -0.55
LIG3-201ENST00000262327 GRAMD1CQ8IYS0 662 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 ERO1AQ96HE7 468 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 FANCLQ9NW38 375 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 ZBTB1Q9Y2K1 713 aa11.58□□□□□ -0.55
LIG3-201ENST00000262327 ERVV-1B6SEH8 477 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 CIAO1O76071 339 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 PDE4BQ07343 736 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 TCIRG1Q13488 830 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 ITPK1Q13572 414 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 SLC39A14Q15043 492 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 SYCP1Q15431 976 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 FAM196AQ6ZSG2 479 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 PDILTQ8N807 584 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 SLC26A6Q9BXS9 759 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 ZNF446Q9NWS9 450 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 ANGEL1Q9UNK9 670 aaKnown RBP11.58□□□□□ -0.56
LIG3-201ENST00000262327 KCNJ14Q9UNX9 436 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 AKAP2Q9Y2D5 859 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 ZNF532Q9HCE3 1301 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 RANBP6O60518 1105 aaKnown RBP11.58□□□□□ -0.56
LIG3-201ENST00000262327 ITGA6P23229 1130 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 GUCY1A2P33402 732 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 PHKA1P46020 1223 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 CRKLP46109 303 aaKnown RBP11.58□□□□□ -0.56
LIG3-201ENST00000262327 TPM4P67936 248 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 KRT27Q7Z3Y8 459 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 TRMT44Q8IYL2 757 aaKnown RBP11.58□□□□□ -0.56
LIG3-201ENST00000262327 ISCA1Q9BUE6 129 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 BTAF1O14981 1849 aa11.58□□□□□ -0.56
LIG3-201ENST00000262327 ERICH4A6NGS2 130 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 FANCGO15287 622 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 EIF5P55010 431 aaKnown RBP11.57□□□□□ -0.56
LIG3-201ENST00000262327 APOA5Q6Q788 366 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 SBF2Q86WG5 1849 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 COL5A3P25940 1745 aaPredicted RBP11.57□□□□□ -0.56
LIG3-201ENST00000262327 METTL16Q86W50 562 aaKnown RBP11.57□□□□□ -0.56
LIG3-201ENST00000262327 CCDC150Q8NCX0 1101 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 IMPACTQ9P2X3 320 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 PCDHA5Q9Y5H7 936 aa11.57□□□□□ -0.56
LIG3-201ENST00000262327 GOLGA8AA7E2F4 631 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 URI1O94763 535 aaPredicted RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 ZFYP08048 801 aaPredicted RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 ARHGAP29Q52LW3 1261 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 TMEM67Q5HYA8 995 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 RC3H1Q5TC82 1133 aaKnown RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 GIGYF2Q6Y7W6 1299 aaKnown RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 CNNM3Q8NE01 707 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 MORC2Q9Y6X9 1032 aaPredicted RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 CNTNAP4Q9C0A0 1308 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 BTBD18B2RXH4 712 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 SH2B2O14492 632 aaPredicted RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 ADD2P35612 726 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 IARSP41252 1262 aaKnown RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 LRRFIP1Q32MZ4 808 aaKnown RBP11.56□□□□□ -0.56
LIG3-201ENST00000262327 MYH15Q9Y2K3 1946 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms