RNA–Protein interactions for RNA: ENST00000261866.11

SPG11-201, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SPG11, Length 7,774 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-201ENST00000261866 VPS16Q9H269 839 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 NELFCDQ8IXH7 590 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 SBNO1A3KN83 1393 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 CTTNBP2Q8WZ74 1663 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 CCDC175P0C221 793 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 RPS6KB1P23443 525 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 PPM1EQ8WY54 764 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 UNC13AQ9UPW8 1703 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 CLRN2A0PK11 232 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 CDCA7Q9BWT1 371 aaPredicted RBP13.68□□□□□ -0.22
SPG11-201ENST00000261866 H7C1D1 291 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 GOLGA8HP0CJ92 632 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 MCM3P25205 808 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 GIGYF2Q6Y7W6 1299 aaKnown RBP13.68□□□□□ -0.22
SPG11-201ENST00000261866 MAK16Q9BXY0 300 aaKnown RBP13.68□□□□□ -0.22
SPG11-201ENST00000261866 KIF21AQ7Z4S6 1674 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 HSF2BPO75031 334 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 RDH13Q8NBN7 331 aa13.68□□□□□ -0.22
SPG11-201ENST00000261866 LRRC47Q8N1G4 583 aaKnown RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 TYRO3Q06418 890 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 UAP1Q16222 522 aaPredicted RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 CFAP58Q5T655 872 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 SELENOSQ9BQE4 189 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 ZBTB7BO15156 539 aaPredicted RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 TFAP4Q01664 338 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 STRN3Q13033 797 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 PPP2R5CQ13362 524 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 PPP1R21Q6ZMI0 780 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 IQCGQ9H095 443 aaKnown RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 CCDC42Q96M95 316 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 TTC12Q9H892 705 aaPredicted RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 POLR3AO14802 1390 aaPredicted RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 TESPA1A2RU30 521 aaPredicted RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 DNAJC21Q5F1R6 531 aaKnown RBP13.67□□□□□ -0.22
SPG11-201ENST00000261866 LPIN2Q92539 896 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 GCKRQ14397 625 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 WDR66Q8TBY9 1149 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 BLZF1Q9H2G9 400 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 NDC80O14777 642 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 ZWINTO95229 277 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 TIGD1Q96MW7 591 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 ATP6V0A2Q9Y487 856 aa13.67□□□□□ -0.22
SPG11-201ENST00000261866 COL17A1Q9UMD9 1497 aaPredicted RBP13.66□□□□□ -0.22
SPG11-201ENST00000261866 C8orf34Q49A92 452 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 WDR44Q5JSH3 913 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 CCDC65Q8IXS2 484 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 SELENOOQ9BVL4 669 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 CEP83Q9Y592 693 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 RFX1P22670 979 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 LRMPQ12912 555 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 TRPC3Q13507 836 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 RAB3IL1Q8TBN0 382 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 ARHGEF35A5YM69 484 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 ALDH1B1P30837 517 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 VPS54Q9P1Q0 977 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 AGTPBP1Q9UPW5 1226 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 IFRD2Q12894 506 aaPredicted RBP13.66□□□□□ -0.22
SPG11-201ENST00000261866 CEP112Q8N8E3 955 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 ZNF569Q5MCW4 686 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 USP26Q9BXU7 913 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 BICDL2A1A5D9 508 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 CTSWP56202 376 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 NOC4LQ9BVI4 516 aaKnown RBP13.66□□□□□ -0.22
SPG11-201ENST00000261866 NACA2Q9H009 215 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 AZI2Q9H6S1 392 aa13.66□□□□□ -0.22
SPG11-201ENST00000261866 RHOXF2BP0C7M4 288 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 EPB41P11171 864 aaKnown RBP13.65□□□□□ -0.22
SPG11-201ENST00000261866 MCM6Q14566 821 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 KLHL40Q2TBA0 621 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 MYCT1Q8N699 235 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 RHOXF2Q9BQY4 288 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 USTQ9Y2C2 406 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 POLR2DO15514 142 aaKnown RBP13.65□□□□□ -0.22
SPG11-201ENST00000261866 IFT74Q96LB3 600 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 ADCY7P51828 1080 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 PPP1R7Q15435 360 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 TPH2Q8IWU9 490 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 TRIM35Q9UPQ4 493 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 ZFYVE9O95405 1425 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 ALAS1P13196 640 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 BMS1Q14692 1282 aaKnown RBP13.65□□□□□ -0.22
SPG11-201ENST00000261866 NCAPG2Q86XI2 1143 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 CLSTN2Q9H4D0 955 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 CGNQ9P2M7 1197 aaKnown RBP13.65□□□□□ -0.22
SPG11-201ENST00000261866 TTLL3Q9Y4R7 772 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 MAPKBP1O60336 1514 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 PARD3Q8TEW0 1356 aa13.65□□□□□ -0.22
SPG11-201ENST00000261866 PDE6BP35913 854 aa13.65□□□□□ -0.23
SPG11-201ENST00000261866 SMTNP53814 917 aa13.65□□□□□ -0.23
SPG11-201ENST00000261866 IGBP1P78318 339 aa13.65□□□□□ -0.23
SPG11-201ENST00000261866 TBC1D10BQ4KMP7 808 aaPredicted RBP13.65□□□□□ -0.23
SPG11-201ENST00000261866 SEC62Q99442 399 aaKnown RBP13.65□□□□□ -0.23
SPG11-201ENST00000261866 SNX14Q9Y5W7 946 aa13.65□□□□□ -0.23
SPG11-201ENST00000261866 TACC1O75410 805 aa13.64□□□□□ -0.23
SPG11-201ENST00000261866 LEO1Q8WVC0 666 aaPredicted RBP13.64□□□□□ -0.23
SPG11-201ENST00000261866 CSADQ9Y600 493 aa13.64□□□□□ -0.23
SPG11-201ENST00000261866 NEMFO60524 1076 aa13.64□□□□□ -0.23
SPG11-201ENST00000261866 CCDC155Q8N6L0 562 aa13.64□□□□□ -0.23
SPG11-201ENST00000261866 IQUBQ8NA54 791 aa13.64□□□□□ -0.23
SPG11-201ENST00000261866 APPBP2Q92624 585 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms