RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SYKP43405 635 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 BCAMP50895 628 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 LCORLQ8N3X6 602 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 GPR108Q9NPR9 543 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 TOGARAM2Q6ZUX3 1019 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 MAGEB6Q8N7X4 407 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 TPM3P06753 285 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 CNNM1Q9NRU3 951 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 A0A1W2PQ27 194 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 A0A1W2PQ64 194 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 A0A1W2PQD8 194 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 CIAO1O76071 339 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 MBD4O95243 580 aa12.37□□□□□ -0.43
USP28-201ENST00000003302 STRBPQ96SI9 672 aaKnown RBP12.37□□□□□ -0.43
USP28-201ENST00000003302 NLRP12P59046 1061 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 SYNE3Q6ZMZ3 975 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 TEX13AQ9BXU3 409 aaPredicted RBP12.36□□□□□ -0.43
USP28-201ENST00000003302 ZSWIM4Q9H7M6 989 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 COL5A2P05997 1499 aaPredicted RBP12.36□□□□□ -0.43
USP28-201ENST00000003302 CPDO75976 1380 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 TEX33O43247 280 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 REXO1L1PQ8IX06 675 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 ZBTB38Q8NAP3 1195 aaPredicted RBP12.36□□□□□ -0.43
USP28-201ENST00000003302 PCDH11XQ9BZA7 1347 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 PCDH11YQ9BZA8 1340 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 GYS2P54840 703 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 CCDC93Q567U6 631 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 EEF2KMTQ96G04 330 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 TOMM22Q9NS69 142 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 JAG2Q9Y219 1238 aa12.36□□□□□ -0.43
USP28-201ENST00000003302 ERICH4A6NGS2 130 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 IRS4O14654 1257 aaPredicted RBP12.35□□□□□ -0.43
USP28-201ENST00000003302 CMA1P23946 247 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 STX17P56962 302 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 DPYDQ12882 1025 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 CFAP100Q494V2 611 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 EPSTI1Q96J88 318 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP28-201ENST00000003302 IL2RBP14784 551 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 CLCN6P51797 869 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 C3orf67Q6ZVT6 689 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 CCDC24Q8N4L8 307 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 RNF225M0QZC1 329 aaPredicted RBP12.35□□□□□ -0.43
USP28-201ENST00000003302 CTAGE5O15320 804 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 POLR2DO15514 142 aaKnown RBP12.35□□□□□ -0.43
USP28-201ENST00000003302 YEATS4O95619 227 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 CDC25AP30304 524 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 KCNG4Q8TDN1 519 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 MYH2Q9UKX2 1941 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 GSG1L2A8MUP6 293 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 NMT2O60551 498 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 CD44P16070 742 aaKnown RBP12.35□□□□□ -0.43
USP28-201ENST00000003302 SFPQP23246 707 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP28-201ENST00000003302 UBASH3AP57075 661 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 MDM2Q00987 491 aaPredicted RBP12.35□□□□□ -0.43
USP28-201ENST00000003302 TRMT112Q9UI30 125 aaKnown RBP12.35□□□□□ -0.43
USP28-201ENST00000003302 ZMYM6O95789 1325 aa12.35□□□□□ -0.43
USP28-201ENST00000003302 VWA3AA6NCI4 1184 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 SASH3O75995 380 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 PDE8BO95263 885 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 CTSWP56202 376 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 SERTAD1Q9UHV2 236 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 TUBE1Q9UJT0 475 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 TFR2Q9UP52 801 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 PAXBP1Q9Y5B6 917 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 CENPFP49454 3210 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 TMEM67Q5HYA8 995 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 NFXL1Q6ZNB6 911 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 PCCAP05165 728 aaPredicted RBP12.34□□□□□ -0.43
USP28-201ENST00000003302 KARSQ15046 597 aaKnown RBP12.34□□□□□ -0.43
USP28-201ENST00000003302 FHOD1Q9Y613 1164 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 BAZ2AQ9UIF9 1905 aaKnown RBP12.34□□□□□ -0.43
USP28-201ENST00000003302 NKRFO15226 690 aaKnown RBP eCLIP12.34□□□□□ -0.43
USP28-201ENST00000003302 SERPINC1P01008 464 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 IFNL3Q8IZI9 196 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 FBXL16Q8N461 479 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 ZNF384Q8TF68 577 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 TMOD3Q9NYL9 352 aa12.34□□□□□ -0.43
USP28-201ENST00000003302 ARHGAP29Q52LW3 1261 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 GIGYF2Q6Y7W6 1299 aaKnown RBP12.33□□□□□ -0.44
USP28-201ENST00000003302 NUP133Q8WUM0 1156 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 CARD6Q9BX69 1037 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 KCNH3Q9ULD8 1083 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 GOLGA8AA7E2F4 631 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 ZBTB43O43298 467 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 DIS3L2Q8IYB7 885 aaKnown RBP12.33□□□□□ -0.44
USP28-201ENST00000003302 TRERF1Q96PN7 1200 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 MRPL44Q9H9J2 332 aaKnown RBP12.33□□□□□ -0.44
USP28-201ENST00000003302 TNS2Q63HR2 1409 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 KLRK1P26718 216 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 RESP18Q5W5W9 173 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 KLHL10Q6JEL2 608 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 RASGRP2Q7LDG7 609 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 CPLX3Q8WVH0 158 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 L2HGDHQ9H9P8 463 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 VPS54Q9P1Q0 977 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 LMTK3Q96Q04 1460 aa12.33□□□□□ -0.44
USP28-201ENST00000003302 ERVV-2B6SEH9 535 aa12.32□□□□□ -0.44
USP28-201ENST00000003302 IFIT3O14879 490 aaKnown RBP12.32□□□□□ -0.44
USP28-201ENST00000003302 MAN1B1Q9UKM7 699 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms