RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ATMINO43313 823 aaPredicted RBP3.8□□□□□ -1.8
VPS35-212ENST00000640313 METRNQ9UJH8 293 aa3.8□□□□□ -1.8
VPS35-212ENST00000640313 NPM1P06748 294 aaKnown RBP eCLIP3.79□□□□□ -1.8
VPS35-212ENST00000640313 FAM163AQ96GL9 167 aaPredicted RBP3.79□□□□□ -1.8
VPS35-212ENST00000640313 MNX1P50219 401 aaPredicted RBP3.78□□□□□ -1.8
VPS35-212ENST00000640313 SCUBE2Q9NQ36 999 aa3.77□□□□□ -1.81
VPS35-212ENST00000640313 MS4A3Q96HJ5 214 aa3.76□□□□□ -1.81
VPS35-212ENST00000640313 CDAN1Q8IWY9 1227 aa3.74□□□□□ -1.81
VPS35-212ENST00000640313 POTEFA5A3E0 1075 aa3.73□□□□□ -1.81
VPS35-212ENST00000640313 ATN1P54259 1190 aaPredicted RBP3.73□□□□□ -1.81
VPS35-212ENST00000640313 CCDC61Q9Y6R9 512 aa3.71□□□□□ -1.82
VPS35-212ENST00000640313 SPDYE4A6NLX3 237 aa3.7□□□□□ -1.82
VPS35-212ENST00000640313 KIF12Q96FN5 646 aa3.7□□□□□ -1.82
VPS35-212ENST00000640313 TIE1P35590 1138 aa3.69□□□□□ -1.82
VPS35-212ENST00000640313 BMP2KQ9NSY1 1161 aaPredicted RBP3.69□□□□□ -1.82
VPS35-212ENST00000640313 TSPYL2Q9H2G4 693 aaPredicted RBP3.68□□□□□ -1.82
VPS35-212ENST00000640313 COLQQ9Y215 455 aaPredicted RBP3.67□□□□□ -1.82
VPS35-212ENST00000640313 ST18O60284 1047 aa3.66□□□□□ -1.82
VPS35-212ENST00000640313 SEC24BO95487 1268 aa3.66□□□□□ -1.82
VPS35-212ENST00000640313 MMRN1Q13201 1228 aa3.66□□□□□ -1.82
VPS35-212ENST00000640313 IER5LQ5T953 404 aa3.66□□□□□ -1.82
VPS35-212ENST00000640313 TRPC6Q9Y210 931 aa3.66□□□□□ -1.82
VPS35-212ENST00000640313 TTLL13PA6NNM8 815 aa3.65□□□□□ -1.83
VPS35-212ENST00000640313 SPNS2Q8IVW8 549 aa3.65□□□□□ -1.83
VPS35-212ENST00000640313 MAP3K13O43283 966 aa3.64□□□□□ -1.83
VPS35-212ENST00000640313 SLAIN1Q8ND83 568 aa3.63□□□□□ -1.83
VPS35-212ENST00000640313 SGIP1Q9BQI5 828 aa3.63□□□□□ -1.83
VPS35-212ENST00000640313 TMEM121BQ9BXQ6 578 aaPredicted RBP3.63□□□□□ -1.83
VPS35-212ENST00000640313 TRIM35Q9UPQ4 493 aa3.62□□□□□ -1.83
VPS35-212ENST00000640313 PROM2Q8N271 834 aa3.61□□□□□ -1.83
VPS35-212ENST00000640313 SNPHO15079 494 aa3.6□□□□□ -1.83
VPS35-212ENST00000640313 CSRNP3Q8WYN3 585 aa3.6□□□□□ -1.83
VPS35-212ENST00000640313 RASEFQ8IZ41 740 aa3.59□□□□□ -1.83
VPS35-212ENST00000640313 PLCG2P16885 1265 aa3.58□□□□□ -1.84
VPS35-212ENST00000640313 PCDHB13Q9Y5F0 798 aa3.58□□□□□ -1.84
VPS35-212ENST00000640313 PLEKHG5O94827 1062 aa3.57□□□□□ -1.84
VPS35-212ENST00000640313 IRX5P78411 483 aaPredicted RBP3.57□□□□□ -1.84
VPS35-212ENST00000640313 IFNL1Q8IU54 200 aa3.55□□□□□ -1.84
VPS35-212ENST00000640313 MIER1Q8N108 512 aa3.55□□□□□ -1.84
VPS35-212ENST00000640313 MARVELD3Q96A59 401 aa3.55□□□□□ -1.84
VPS35-212ENST00000640313 TMEM106CQ9BVX2 250 aa3.55□□□□□ -1.84
VPS35-212ENST00000640313 OCEL1Q9H607 264 aa3.55□□□□□ -1.84
VPS35-212ENST00000640313 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.55□□□□□ -1.84
VPS35-212ENST00000640313 KRTAP3-3Q9BYR6 98 aa3.53□□□□□ -1.84
VPS35-212ENST00000640313 KRTAP3-2Q9BYR7 98 aa3.53□□□□□ -1.84
VPS35-212ENST00000640313 NUBP1P53384 320 aa3.52□□□□□ -1.85
VPS35-212ENST00000640313 POTEB3A0JP26 581 aa3.51□□□□□ -1.85
VPS35-212ENST00000640313 EMP3P54852 163 aa3.51□□□□□ -1.85
VPS35-212ENST00000640313 POTEBQ6S5H4 581 aa3.51□□□□□ -1.85
VPS35-212ENST00000640313 HS3ST6Q96QI5 342 aa3.51□□□□□ -1.85
VPS35-212ENST00000640313 ZBTB47Q9UFB7 747 aaPredicted RBP3.51□□□□□ -1.85
VPS35-212ENST00000640313 FAM205CA6NFA0 338 aa3.49□□□□□ -1.85
VPS35-212ENST00000640313 PLCD3Q8N3E9 789 aa3.49□□□□□ -1.85
VPS35-212ENST00000640313 FAM212AQ96EL1 285 aa3.49□□□□□ -1.85
VPS35-212ENST00000640313 L3MBTL3Q96JM7 780 aaPredicted RBP3.49□□□□□ -1.85
VPS35-212ENST00000640313 PDCD7Q8N8D1 485 aaKnown RBP3.48□□□□□ -1.85
VPS35-212ENST00000640313 C3orf67Q6ZVT6 689 aa3.47□□□□□ -1.85
VPS35-212ENST00000640313 HOXB1P14653 301 aaPredicted RBP3.44□□□□□ -1.86
VPS35-212ENST00000640313 ILDR1Q86SU0 546 aaPredicted RBP3.44□□□□□ -1.86
VPS35-212ENST00000640313 RNF166Q96A37 237 aaPredicted RBP3.44□□□□□ -1.86
VPS35-212ENST00000640313 PCDHB8Q9UN66 801 aa3.44□□□□□ -1.86
VPS35-212ENST00000640313 PYGBP11216 843 aa3.43□□□□□ -1.86
VPS35-212ENST00000640313 HOXB3P14651 431 aaPredicted RBP3.43□□□□□ -1.86
VPS35-212ENST00000640313 MKRN3Q13064 507 aaKnown RBP3.43□□□□□ -1.86
VPS35-212ENST00000640313 DCAF8Q5TAQ9 597 aa3.42□□□□□ -1.86
VPS35-212ENST00000640313 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS35-212ENST00000640313 MYT1LQ9UL68 1186 aa3.42□□□□□ -1.86
VPS35-212ENST00000640313 GOLGA2Q08379 1002 aa3.41□□□□□ -1.86
VPS35-212ENST00000640313 ZNF467Q7Z7K2 595 aaPredicted RBP3.41□□□□□ -1.86
VPS35-212ENST00000640313 ERBB3P21860 1342 aa3.41□□□□□ -1.86
VPS35-212ENST00000640313 CHRM1P11229 460 aaPredicted RBP3.4□□□□□ -1.87
VPS35-212ENST00000640313 PTGER2P43116 358 aa3.4□□□□□ -1.87
VPS35-212ENST00000640313 DOK7Q18PE1 504 aa3.39□□□□□ -1.87
VPS35-212ENST00000640313 ZNF687Q8N1G0 1237 aa3.39□□□□□ -1.87
VPS35-212ENST00000640313 ZNF710Q8N1W2 664 aa3.39□□□□□ -1.87
VPS35-212ENST00000640313 DPY19L2Q6NUT2 758 aa3.38□□□□□ -1.87
VPS35-212ENST00000640313 BOLA1Q9Y3E2 137 aa3.38□□□□□ -1.87
VPS35-212ENST00000640313 RIMBP2O15034 1052 aa3.37□□□□□ -1.87
VPS35-212ENST00000640313 PSEN1P49768 467 aa3.37□□□□□ -1.87
VPS35-212ENST00000640313 GSE1Q14687 1217 aa3.37□□□□□ -1.87
VPS35-212ENST00000640313 VARS2Q5ST30 1063 aaKnown RBP3.37□□□□□ -1.87
VPS35-212ENST00000640313 EHMT2Q96KQ7 1210 aa3.37□□□□□ -1.87
VPS35-212ENST00000640313 ZSWIM6Q9HCJ5 1215 aa3.37□□□□□ -1.87
VPS35-212ENST00000640313 G3V3G9 751 aa3.36□□□□□ -1.87
VPS35-212ENST00000640313 PDAP1Q13442 181 aaKnown RBP3.35□□□□□ -1.87
VPS35-212ENST00000640313 GPR153Q6NV75 609 aa3.34□□□□□ -1.87
VPS35-212ENST00000640313 ANKRD13DQ6ZTN6 518 aa3.32□□□□□ -1.88
VPS35-212ENST00000640313 CABP2Q9NPB3 220 aa3.32□□□□□ -1.88
VPS35-212ENST00000640313 LSM11P83369 360 aaKnown RBP eCLIP3.31□□□□□ -1.88
VPS35-212ENST00000640313 PLA2G2EQ9NZK7 142 aa3.31□□□□□ -1.88
VPS35-212ENST00000640313 FBXO3Q9UK99 471 aa3.31□□□□□ -1.88
VPS35-212ENST00000640313 TMEM92Q6UXU6 159 aa3.3□□□□□ -1.88
VPS35-212ENST00000640313 HCSTQ9UBK5 93 aa3.3□□□□□ -1.88
VPS35-212ENST00000640313 ZNF316A6NFI3 1004 aaPredicted RBP3.29□□□□□ -1.88
VPS35-212ENST00000640313 PBX2P40425 430 aa3.28□□□□□ -1.88
VPS35-212ENST00000640313 ARSIQ5FYB1 569 aa3.28□□□□□ -1.88
VPS35-212ENST00000640313 MICALL2Q8IY33 904 aa3.28□□□□□ -1.88
VPS35-212ENST00000640313 KLHL34Q8N239 644 aa3.28□□□□□ -1.88
VPS35-212ENST00000640313 EFCAB3Q8N7B9 438 aa3.26□□□□□ -1.89
VPS35-212ENST00000640313 SOX12O15370 315 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms