RNA–Protein interactions for RNA: ENST00000640072.1

NECAP1-222, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 3,456 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-222ENST00000640072 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.71□□□□□ -1.01
NECAP1-222ENST00000640072 VSIG10Q8N0Z9 540 aa8.68□□□□□ -1.02
NECAP1-222ENST00000640072 CCER1Q8TC90 406 aaPredicted RBP8.66□□□□□ -1.02
NECAP1-222ENST00000640072 KDM2AQ9Y2K7 1162 aa8.64□□□□□ -1.03
NECAP1-222ENST00000640072 FBLN2P98095 1184 aa8.63□□□□□ -1.03
NECAP1-222ENST00000640072 ARID3AQ99856 593 aa8.63□□□□□ -1.03
NECAP1-222ENST00000640072 SUPT16HQ9Y5B9 1047 aaKnown RBP8.63□□□□□ -1.03
NECAP1-222ENST00000640072 CCDC180Q9P1Z9 1646 aa8.62□□□□□ -1.03
NECAP1-222ENST00000640072 PRDM10Q9NQV6 1147 aa8.61□□□□□ -1.03
NECAP1-222ENST00000640072 BRPF3Q9ULD4 1205 aa8.61□□□□□ -1.03
NECAP1-222ENST00000640072 NAP1L2Q9ULW6 460 aaPredicted RBP8.61□□□□□ -1.03
NECAP1-222ENST00000640072 ZNF592Q92610 1267 aa8.61□□□□□ -1.03
NECAP1-222ENST00000640072 NCLP19338 710 aaKnown RBP8.6□□□□□ -1.03
NECAP1-222ENST00000640072 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.59□□□□□ -1.03
NECAP1-222ENST00000640072 ZNF526Q8TF50 670 aaPredicted RBP8.57□□□□□ -1.04
NECAP1-222ENST00000640072 ZFP91Q96JP5 570 aaPredicted RBP8.57□□□□□ -1.04
NECAP1-222ENST00000640072 RBM19Q9Y4C8 960 aaKnown RBP8.57□□□□□ -1.04
NECAP1-222ENST00000640072 MYO15BQ96JP2 1530 aa8.56□□□□□ -1.04
NECAP1-222ENST00000640072 DCAF1Q9Y4B6 1507 aa8.56□□□□□ -1.04
NECAP1-222ENST00000640072 CNPY4Q8N129 248 aa8.56□□□□□ -1.04
NECAP1-222ENST00000640072 PHF23Q9BUL5 403 aaPredicted RBP8.56□□□□□ -1.04
NECAP1-222ENST00000640072 RTL5Q5HYW3 569 aaPredicted RBP8.54□□□□□ -1.04
NECAP1-222ENST00000640072 TICAM2Q86XR7 235 aa8.54□□□□□ -1.04
NECAP1-222ENST00000640072 PUS7Q96PZ0 661 aaKnown RBP8.53□□□□□ -1.04
NECAP1-222ENST00000640072 CHMP4BQ9H444 224 aaKnown RBP8.53□□□□□ -1.04
NECAP1-222ENST00000640072 PSMD1Q99460 953 aa8.52□□□□□ -1.05
NECAP1-222ENST00000640072 WWC1Q8IX03 1113 aa8.5□□□□□ -1.05
NECAP1-222ENST00000640072 CLSTN1O94985 981 aa8.49□□□□□ -1.05
NECAP1-222ENST00000640072 NBR1Q14596 966 aa8.49□□□□□ -1.05
NECAP1-222ENST00000640072 IL27Q8NEV9 243 aa8.49□□□□□ -1.05
NECAP1-222ENST00000640072 ARID4BQ4LE39 1312 aaPredicted RBP8.48□□□□□ -1.05
NECAP1-222ENST00000640072 TMED8Q6PL24 325 aaPredicted RBP8.48□□□□□ -1.05
NECAP1-222ENST00000640072 BBXQ8WY36 941 aaPredicted RBP8.48□□□□□ -1.05
NECAP1-222ENST00000640072 FKBP8Q14318 412 aa8.47□□□□□ -1.05
NECAP1-222ENST00000640072 SECISBP2LQ93073 1101 aaKnown RBP8.46□□□□□ -1.05
NECAP1-222ENST00000640072 PTMSP20962 102 aa8.46□□□□□ -1.05
NECAP1-222ENST00000640072 CWC22Q9HCG8 908 aaKnown RBP8.46□□□□□ -1.06
NECAP1-222ENST00000640072 ZBTB7CA1YPR0 619 aa8.45□□□□□ -1.06
NECAP1-222ENST00000640072 MIER1Q8N108 512 aa8.45□□□□□ -1.06
NECAP1-222ENST00000640072 ZNF316A6NFI3 1004 aaPredicted RBP8.45□□□□□ -1.06
NECAP1-222ENST00000640072 PLCD4Q9BRC7 762 aa8.45□□□□□ -1.06
NECAP1-222ENST00000640072 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.44□□□□□ -1.06
NECAP1-222ENST00000640072 IPO4Q8TEX9 1081 aaKnown RBP8.44□□□□□ -1.06
NECAP1-222ENST00000640072 MSH5O43196 834 aa8.44□□□□□ -1.06
NECAP1-222ENST00000640072 TEX2Q8IWB9 1127 aa8.44□□□□□ -1.06
NECAP1-222ENST00000640072 CERS3Q8IU89 383 aa8.41□□□□□ -1.06
NECAP1-222ENST00000640072 ZNF428Q96B54 188 aa8.4□□□□□ -1.06
NECAP1-222ENST00000640072 CANXP27824 592 aaKnown RBP8.39□□□□□ -1.07
NECAP1-222ENST00000640072 FTSJ3Q8IY81 847 aaKnown RBP8.39□□□□□ -1.07
NECAP1-222ENST00000640072 PATL2C9JE40 543 aaKnown RBP8.39□□□□□ -1.07
NECAP1-222ENST00000640072 TRIM41Q8WV44 630 aa8.39□□□□□ -1.07
NECAP1-222ENST00000640072 USP35Q9P2H5 1018 aa8.38□□□□□ -1.07
NECAP1-222ENST00000640072 CNGB1Q14028 1251 aaPredicted RBP8.38□□□□□ -1.07
NECAP1-222ENST00000640072 PPM1GO15355 546 aaPredicted RBP8.37□□□□□ -1.07
NECAP1-222ENST00000640072 NECTIN2Q92692 538 aa8.37□□□□□ -1.07
NECAP1-222ENST00000640072 FANCIQ9NVI1 1328 aa8.36□□□□□ -1.07
NECAP1-222ENST00000640072 OS9Q13438 667 aaPredicted RBP8.35□□□□□ -1.07
NECAP1-222ENST00000640072 PTMAP06454 111 aaKnown RBP8.34□□□□□ -1.07
NECAP1-222ENST00000640072 ZBTB22O15209 634 aa8.34□□□□□ -1.07
NECAP1-222ENST00000640072 ITGAEP38570 1179 aa8.33□□□□□ -1.08
NECAP1-222ENST00000640072 FAM43BQ6ZT52 329 aaPredicted RBP8.33□□□□□ -1.08
NECAP1-222ENST00000640072 PRDM16Q9HAZ2 1276 aa8.33□□□□□ -1.08
NECAP1-222ENST00000640072 RBM25P49756 843 aaKnown RBP8.33□□□□□ -1.08
NECAP1-222ENST00000640072 RAD21O60216 631 aa8.32□□□□□ -1.08
NECAP1-222ENST00000640072 ZNF692Q9BU19 519 aaPredicted RBP8.32□□□□□ -1.08
NECAP1-222ENST00000640072 FAM193AP78312 1265 aa8.32□□□□□ -1.08
NECAP1-222ENST00000640072 KCNG1Q9UIX4 513 aa8.31□□□□□ -1.08
NECAP1-222ENST00000640072 NPM1P06748 294 aaKnown RBP eCLIP8.3□□□□□ -1.08
NECAP1-222ENST00000640072 CHRM1P11229 460 aaPredicted RBP8.29□□□□□ -1.08
NECAP1-222ENST00000640072 TRHP20396 242 aaPredicted RBP8.29□□□□□ -1.08
NECAP1-222ENST00000640072 NOP58Q9Y2X3 529 aaKnown RBP8.29□□□□□ -1.08
NECAP1-222ENST00000640072 RNF216Q9NWF9 866 aaPredicted RBP8.28□□□□□ -1.08
NECAP1-222ENST00000640072 ANAPC15P60006 121 aa8.28□□□□□ -1.08
NECAP1-222ENST00000640072 KCTD17Q8N5Z5 321 aa8.28□□□□□ -1.08
NECAP1-222ENST00000640072 HSP90AA2PQ14568 343 aaPredicted RBP8.27□□□□□ -1.08
NECAP1-222ENST00000640072 NEFMP07197 916 aa8.27□□□□□ -1.09
NECAP1-222ENST00000640072 GTF2E1P29083 439 aaPredicted RBP8.27□□□□□ -1.09
NECAP1-222ENST00000640072 FOXD4L5Q5VV16 416 aaPredicted RBP8.27□□□□□ -1.09
NECAP1-222ENST00000640072 FOXD4L4Q8WXT5 416 aaPredicted RBP8.27□□□□□ -1.09
NECAP1-222ENST00000640072 PLCD3Q8N3E9 789 aa8.26□□□□□ -1.09
NECAP1-222ENST00000640072 FAM177A1Q8N128 213 aaPredicted RBP8.26□□□□□ -1.09
NECAP1-222ENST00000640072 GPATCH11Q8N954 259 aa8.26□□□□□ -1.09
NECAP1-222ENST00000640072 MCCP23508 829 aa8.24□□□□□ -1.09
NECAP1-222ENST00000640072 FAM9BQ8IZU0 186 aa8.24□□□□□ -1.09
NECAP1-222ENST00000640072 SETQ01105 290 aaPredicted RBP8.23□□□□□ -1.09
NECAP1-222ENST00000640072 FAM50AQ14320 339 aaKnown RBP8.23□□□□□ -1.09
NECAP1-222ENST00000640072 CCDC27Q2M243 656 aa8.23□□□□□ -1.09
NECAP1-222ENST00000640072 KDM4AO75164 1064 aa8.23□□□□□ -1.09
NECAP1-222ENST00000640072 GRIPAP1Q4V328 841 aa8.23□□□□□ -1.09
NECAP1-222ENST00000640072 STAC3Q96MF2 364 aa8.22□□□□□ -1.09
NECAP1-222ENST00000640072 MTMR7Q9Y216 660 aa8.22□□□□□ -1.09
NECAP1-222ENST00000640072 CC2D2BQ6DHV5 1058 aa8.22□□□□□ -1.09
NECAP1-222ENST00000640072 APPP05067 770 aa8.21□□□□□ -1.09
NECAP1-222ENST00000640072 ARID3CA6NKF2 412 aa8.19□□□□□ -1.1
NECAP1-222ENST00000640072 CLGNO14967 610 aa8.19□□□□□ -1.1
NECAP1-222ENST00000640072 HSP90AA1P07900 732 aaKnown RBP8.19□□□□□ -1.1
NECAP1-222ENST00000640072 ZBTB47Q9UFB7 747 aaPredicted RBP8.19□□□□□ -1.1
NECAP1-222ENST00000640072 DNAJC2Q99543 621 aaKnown RBP8.19□□□□□ -1.1
NECAP1-222ENST00000640072 ANP32AP39687 249 aaKnown RBP8.18□□□□□ -1.1
NECAP1-222ENST00000640072 SOX12O15370 315 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms