RNA–Protein interactions for RNA: ENST00000639953.1

ATM-229, Transcript of ATM serine/threonine kinase, humanhuman

TSL 5 BASIC

Gene ATM, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-229ENST00000639953 MS4A3Q96HJ5 214 aa14.11□□□□□ -0.15
ATM-229ENST00000639953 NUBP1P53384 320 aa14.09□□□□□ -0.15
ATM-229ENST00000639953 LHX8Q68G74 356 aa14.09□□□□□ -0.15
ATM-229ENST00000639953 NISCHQ9Y2I1 1504 aa14.06□□□□□ -0.16
ATM-229ENST00000639953 KIF12Q96FN5 646 aa14.06□□□□□ -0.16
ATM-229ENST00000639953 ZBTB47Q9UFB7 747 aaPredicted RBP14.06□□□□□ -0.16
ATM-229ENST00000639953 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
ATM-229ENST00000639953 MAP3K13O43283 966 aa14.01□□□□□ -0.17
ATM-229ENST00000639953 VASPP50552 380 aaPredicted RBP13.99□□□□□ -0.17
ATM-229ENST00000639953 TRPC6Q9Y210 931 aa13.97□□□□□ -0.17
ATM-229ENST00000639953 ATMINO43313 823 aaPredicted RBP13.94□□□□□ -0.18
ATM-229ENST00000639953 ASTLQ6HA08 431 aaPredicted RBP13.93□□□□□ -0.18
ATM-229ENST00000639953 KLHL34Q8N239 644 aa13.93□□□□□ -0.18
ATM-229ENST00000639953 DCAF8Q5TAQ9 597 aa13.92□□□□□ -0.18
ATM-229ENST00000639953 FAM212AQ96EL1 285 aa13.91□□□□□ -0.18
ATM-229ENST00000639953 POTEB2H3BUK9 544 aa13.88□□□□□ -0.19
ATM-229ENST00000639953 ATN1P54259 1190 aaPredicted RBP13.88□□□□□ -0.19
ATM-229ENST00000639953 BMP2KQ9NSY1 1161 aaPredicted RBP13.86□□□□□ -0.19
ATM-229ENST00000639953 PCDHB13Q9Y5F0 798 aa13.86□□□□□ -0.19
ATM-229ENST00000639953 PYGBP11216 843 aa13.82□□□□□ -0.2
ATM-229ENST00000639953 IFNLR1Q8IU57 520 aaPredicted RBP13.82□□□□□ -0.2
ATM-229ENST00000639953 IFNL1Q8IU54 200 aa13.81□□□□□ -0.2
ATM-229ENST00000639953 SGIP1Q9BQI5 828 aa13.81□□□□□ -0.2
ATM-229ENST00000639953 TIE1P35590 1138 aa13.8□□□□□ -0.2
ATM-229ENST00000639953 METRNQ9UJH8 293 aa13.8□□□□□ -0.2
ATM-229ENST00000639953 SLC39A7Q92504 469 aa13.79□□□□□ -0.2
ATM-229ENST00000639953 TTLL13PA6NNM8 815 aa13.77□□□□□ -0.21
ATM-229ENST00000639953 C7P10643 843 aa13.77□□□□□ -0.21
ATM-229ENST00000639953 OTUD5Q96G74 571 aa13.73□□□□□ -0.21
ATM-229ENST00000639953 POTEFA5A3E0 1075 aa13.71□□□□□ -0.21
ATM-229ENST00000639953 POTEJP0CG39 1038 aa13.71□□□□□ -0.21
ATM-229ENST00000639953 PCDHB8Q9UN66 801 aa13.71□□□□□ -0.21
ATM-229ENST00000639953 GSE1Q14687 1217 aa13.7□□□□□ -0.22
ATM-229ENST00000639953 SPOCK2Q92563 424 aa13.69□□□□□ -0.22
ATM-229ENST00000639953 TRIM35Q9UPQ4 493 aa13.68□□□□□ -0.22
ATM-229ENST00000639953 TMEM106CQ9BVX2 250 aa13.67□□□□□ -0.22
ATM-229ENST00000639953 COLQQ9Y215 455 aaPredicted RBP13.64□□□□□ -0.23
ATM-229ENST00000639953 CIZ1Q9ULV3 898 aaPredicted RBP13.63□□□□□ -0.23
ATM-229ENST00000639953 CHRM1P11229 460 aaPredicted RBP13.59□□□□□ -0.23
ATM-229ENST00000639953 SEC24BO95487 1268 aa13.58□□□□□ -0.24
ATM-229ENST00000639953 IER5LQ5T953 404 aa13.53□□□□□ -0.24
ATM-229ENST00000639953 ZNF467Q7Z7K2 595 aaPredicted RBP13.53□□□□□ -0.24
ATM-229ENST00000639953 MAMSTRQ6ZN01 415 aa13.49□□□□□ -0.25
ATM-229ENST00000639953 IRX5P78411 483 aaPredicted RBP13.47□□□□□ -0.25
ATM-229ENST00000639953 PSEN1P49768 467 aa13.46□□□□□ -0.25
ATM-229ENST00000639953 SCUBE2Q9NQ36 999 aa13.44□□□□□ -0.26
ATM-229ENST00000639953 PLCG2P16885 1265 aa13.43□□□□□ -0.26
ATM-229ENST00000639953 OCEL1Q9H607 264 aa13.4□□□□□ -0.26
ATM-229ENST00000639953 PDAP1Q13442 181 aaKnown RBP13.39□□□□□ -0.27
ATM-229ENST00000639953 GOLGA2Q08379 1002 aa13.36□□□□□ -0.27
ATM-229ENST00000639953 MKRN3Q13064 507 aaKnown RBP13.35□□□□□ -0.27
ATM-229ENST00000639953 FAM163AQ96GL9 167 aaPredicted RBP13.32□□□□□ -0.28
ATM-229ENST00000639953 CABP2Q9NPB3 220 aa13.32□□□□□ -0.28
ATM-229ENST00000639953 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
ATM-229ENST00000639953 TRIM41Q8WV44 630 aa13.31□□□□□ -0.28
ATM-229ENST00000639953 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.29□□□□□ -0.286e-8■■■■□ 22.7
ATM-229ENST00000639953 SLAIN1Q8ND83 568 aa13.28□□□□□ -0.28
ATM-229ENST00000639953 RNF25Q96BH1 459 aaPredicted RBP13.28□□□□□ -0.28
ATM-229ENST00000639953 LCE2DQ5TA82 110 aaPredicted RBP13.26□□□□□ -0.29
ATM-229ENST00000639953 DPY19L2Q6NUT2 758 aa13.25□□□□□ -0.29
ATM-229ENST00000639953 POTEMA6NI47 508 aa13.23□□□□□ -0.29
ATM-229ENST00000639953 POTEGQ6S5H5 508 aa13.22□□□□□ -0.29
ATM-229ENST00000639953 RIOK3O14730 519 aaKnown RBP13.21□□□□□ -0.29
ATM-229ENST00000639953 ILDR1Q86SU0 546 aaPredicted RBP13.2□□□□□ -0.3
ATM-229ENST00000639953 EFCAB3Q8N7B9 438 aa13.2□□□□□ -0.3
ATM-229ENST00000639953 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.18□□□□□ -0.3
ATM-229ENST00000639953 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.17□□□□□ -0.3
ATM-229ENST00000639953 L3MBTL3Q96JM7 780 aaPredicted RBP13.17□□□□□ -0.3
ATM-229ENST00000639953 ZFP91Q96JP5 570 aaPredicted RBP13.17□□□□□ -0.3
ATM-229ENST00000639953 VGFO15240 615 aaPredicted RBP13.13□□□□□ -0.31
ATM-229ENST00000639953 ECM2O94769 699 aaPredicted RBP13.12□□□□□ -0.31
ATM-229ENST00000639953 PKD2Q13563 968 aa13.12□□□□□ -0.31
ATM-229ENST00000639953 C3orf67Q6ZVT6 689 aa13.09□□□□□ -0.31
ATM-229ENST00000639953 ST18O60284 1047 aa13.08□□□□□ -0.32
ATM-229ENST00000639953 BOLA1Q9Y3E2 137 aa13.06□□□□□ -0.32
ATM-229ENST00000639953 RGL2O15211 777 aa13.04□□□□□ -0.32
ATM-229ENST00000639953 SOX12O15370 315 aa13.03□□□□□ -0.32
ATM-229ENST00000639953 BCL11BQ9C0K0 894 aaPredicted RBP13.03□□□□□ -0.32
ATM-229ENST00000639953 PHF8Q9UPP1 1060 aa13.03□□□□□ -0.32
ATM-229ENST00000639953 PLSCR2Q9NRY7 297 aa13.02□□□□□ -0.33
ATM-229ENST00000639953 G3V3G9 751 aa13.01□□□□□ -0.33
ATM-229ENST00000639953 MS4A4AQ96JQ5 239 aa13.01□□□□□ -0.33
ATM-229ENST00000639953 STK24Q9Y6E0 443 aa13□□□□□ -0.33
ATM-229ENST00000639953 TMEM121BQ9BXQ6 578 aaPredicted RBP12.98□□□□□ -0.33
ATM-229ENST00000639953 SNPHO15079 494 aa12.97□□□□□ -0.33
ATM-229ENST00000639953 STK25O00506 426 aa12.96□□□□□ -0.33
ATM-229ENST00000639953 TAOK2Q9UL54 1235 aa12.96□□□□□ -0.33
ATM-229ENST00000639953 MICALL2Q8IY33 904 aa12.92□□□□□ -0.34
ATM-229ENST00000639953 PCDH10Q9P2E7 1040 aa12.92□□□□□ -0.34
ATM-229ENST00000639953 MARVELD3Q96A59 401 aa12.91□□□□□ -0.34
ATM-229ENST00000639953 NLRP6P59044 892 aa12.9□□□□□ -0.34
ATM-229ENST00000639953 CDAN1Q8IWY9 1227 aa12.9□□□□□ -0.34
ATM-229ENST00000639953 FBXO22Q8NEZ5 403 aa12.9□□□□□ -0.34
ATM-229ENST00000639953 TMEM92Q6UXU6 159 aa12.89□□□□□ -0.35
ATM-229ENST00000639953 MFRPQ9BY79 579 aa12.89□□□□□ -0.35
ATM-229ENST00000639953 HOXB3P14651 431 aaPredicted RBP12.85□□□□□ -0.35
ATM-229ENST00000639953 POTEB3A0JP26 581 aa12.76□□□□□ -0.37
ATM-229ENST00000639953 EMP3P54852 163 aa12.76□□□□□ -0.37
ATM-229ENST00000639953 POTEBQ6S5H4 581 aa12.76□□□□□ -0.37
ATM-229ENST00000639953 PPP1R37O75864 691 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms