RNA–Protein interactions for RNA: ENST00000637613.1

CHD2-228, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-228ENST00000637613 SLC39A7Q92504 469 aa10.71□□□□□ -0.69
CHD2-228ENST00000637613 ATMINO43313 823 aaPredicted RBP10.66□□□□□ -0.7
CHD2-228ENST00000637613 FAM163AQ96GL9 167 aaPredicted RBP10.65□□□□□ -0.7
CHD2-228ENST00000637613 NPM1P06748 294 aaKnown RBP eCLIP10.64□□□□□ -0.71
CHD2-228ENST00000637613 SCUBE2Q9NQ36 999 aa10.62□□□□□ -0.71
CHD2-228ENST00000637613 MS4A3Q96HJ5 214 aa10.61□□□□□ -0.71
CHD2-228ENST00000637613 MNX1P50219 401 aaPredicted RBP10.57□□□□□ -0.72
CHD2-228ENST00000637613 ATN1P54259 1190 aaPredicted RBP10.51□□□□□ -0.73
CHD2-228ENST00000637613 CDAN1Q8IWY9 1227 aa10.5□□□□□ -0.73
CHD2-228ENST00000637613 EHMT2Q96KQ7 1210 aa10.49□□□□□ -0.73
CHD2-228ENST00000637613 POTEFA5A3E0 1075 aa10.46□□□□□ -0.73
CHD2-228ENST00000637613 SPDYE4A6NLX3 237 aa10.4□□□□□ -0.74
CHD2-228ENST00000637613 BMP2KQ9NSY1 1161 aaPredicted RBP10.4□□□□□ -0.74
CHD2-228ENST00000637613 CCDC61Q9Y6R9 512 aa10.39□□□□□ -0.75
CHD2-228ENST00000637613 KIF12Q96FN5 646 aa10.37□□□□□ -0.75
CHD2-228ENST00000637613 TSPYL2Q9H2G4 693 aaPredicted RBP10.37□□□□□ -0.75
CHD2-228ENST00000637613 TIE1P35590 1138 aa10.35□□□□□ -0.75
CHD2-228ENST00000637613 COLQQ9Y215 455 aaPredicted RBP10.33□□□□□ -0.76
CHD2-228ENST00000637613 TRPC6Q9Y210 931 aa10.32□□□□□ -0.76
CHD2-228ENST00000637613 SEC24BO95487 1268 aa10.31□□□□□ -0.76
CHD2-228ENST00000637613 ST18O60284 1047 aa10.3□□□□□ -0.76
CHD2-228ENST00000637613 MMRN1Q13201 1228 aa10.3□□□□□ -0.76
CHD2-228ENST00000637613 MAP3K13O43283 966 aa10.26□□□□□ -0.77
CHD2-228ENST00000637613 IER5LQ5T953 404 aa10.26□□□□□ -0.77
CHD2-228ENST00000637613 SPNS2Q8IVW8 549 aa10.26□□□□□ -0.77
CHD2-228ENST00000637613 TTLL13PA6NNM8 815 aa10.25□□□□□ -0.77
CHD2-228ENST00000637613 SLAIN1Q8ND83 568 aa10.24□□□□□ -0.77
CHD2-228ENST00000637613 CSRNP3Q8WYN3 585 aa10.24□□□□□ -0.77
CHD2-228ENST00000637613 TMEM121BQ9BXQ6 578 aaPredicted RBP10.19□□□□□ -0.78
CHD2-228ENST00000637613 TRIM35Q9UPQ4 493 aa10.18□□□□□ -0.78
CHD2-228ENST00000637613 SGIP1Q9BQI5 828 aa10.13□□□□□ -0.79
CHD2-228ENST00000637613 RASEFQ8IZ41 740 aa10.12□□□□□ -0.79
CHD2-228ENST00000637613 PROM2Q8N271 834 aa10.09□□□□□ -0.79
CHD2-228ENST00000637613 SNPHO15079 494 aa10.08□□□□□ -0.8
CHD2-228ENST00000637613 PLCG2P16885 1265 aa10.07□□□□□ -0.8
CHD2-228ENST00000637613 PCDHB13Q9Y5F0 798 aa10.07□□□□□ -0.8
CHD2-228ENST00000637613 PLEKHG5O94827 1062 aa10.06□□□□□ -0.8
CHD2-228ENST00000637613 MARVELD3Q96A59 401 aa10.04□□□□□ -0.8
CHD2-228ENST00000637613 IRX5P78411 483 aaPredicted RBP10.03□□□□□ -0.8
CHD2-228ENST00000637613 TMEM106CQ9BVX2 250 aa10.01□□□□□ -0.81
CHD2-228ENST00000637613 IFNL1Q8IU54 200 aa10□□□□□ -0.81
CHD2-228ENST00000637613 MIER1Q8N108 512 aa9.99□□□□□ -0.81
CHD2-228ENST00000637613 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.98□□□□□ -0.81
CHD2-228ENST00000637613 OCEL1Q9H607 264 aa9.97□□□□□ -0.81
CHD2-228ENST00000637613 EMP3P54852 163 aa9.94□□□□□ -0.82
CHD2-228ENST00000637613 KRTAP3-3Q9BYR6 98 aa9.94□□□□□ -0.82
CHD2-228ENST00000637613 KRTAP3-2Q9BYR7 98 aa9.94□□□□□ -0.82
CHD2-228ENST00000637613 NUBP1P53384 320 aa9.88□□□□□ -0.83
CHD2-228ENST00000637613 HS3ST6Q96QI5 342 aa9.88□□□□□ -0.83
CHD2-228ENST00000637613 POTEB3A0JP26 581 aa9.87□□□□□ -0.83
CHD2-228ENST00000637613 POTEBQ6S5H4 581 aa9.87□□□□□ -0.83
CHD2-228ENST00000637613 ZBTB47Q9UFB7 747 aaPredicted RBP9.85□□□□□ -0.83
CHD2-228ENST00000637613 FAM205CA6NFA0 338 aa9.83□□□□□ -0.84
CHD2-228ENST00000637613 PLCD3Q8N3E9 789 aa9.83□□□□□ -0.84
CHD2-228ENST00000637613 FAM212AQ96EL1 285 aa9.83□□□□□ -0.84
CHD2-228ENST00000637613 C3orf67Q6ZVT6 689 aa9.81□□□□□ -0.84
CHD2-228ENST00000637613 PDCD7Q8N8D1 485 aaKnown RBP9.78□□□□□ -0.84
CHD2-228ENST00000637613 L3MBTL3Q96JM7 780 aaPredicted RBP9.76□□□□□ -0.85
CHD2-228ENST00000637613 RNF166Q96A37 237 aaPredicted RBP9.72□□□□□ -0.85
CHD2-228ENST00000637613 PCDHB8Q9UN66 801 aa9.69□□□□□ -0.86
CHD2-228ENST00000637613 PYGBP11216 843 aa9.68□□□□□ -0.86
CHD2-228ENST00000637613 MKRN3Q13064 507 aaKnown RBP9.65□□□□□ -0.86
CHD2-228ENST00000637613 GOLGA2Q08379 1002 aa9.64□□□□□ -0.87
CHD2-228ENST00000637613 HOXB3P14651 431 aaPredicted RBP9.63□□□□□ -0.87
CHD2-228ENST00000637613 HOXB1P14653 301 aaPredicted RBP9.63□□□□□ -0.87
CHD2-228ENST00000637613 DCAF8Q5TAQ9 597 aa9.63□□□□□ -0.87
CHD2-228ENST00000637613 MYT1LQ9UL68 1186 aa9.63□□□□□ -0.87
CHD2-228ENST00000637613 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.62□□□□□ -0.872e-8■■■■□ 21.9
CHD2-228ENST00000637613 ERBB3P21860 1342 aa9.6□□□□□ -0.87
CHD2-228ENST00000637613 ILDR1Q86SU0 546 aaPredicted RBP9.59□□□□□ -0.87
CHD2-228ENST00000637613 ZNF467Q7Z7K2 595 aaPredicted RBP9.58□□□□□ -0.88
CHD2-228ENST00000637613 ZNF710Q8N1W2 664 aa9.58□□□□□ -0.88
CHD2-228ENST00000637613 DOK7Q18PE1 504 aa9.55□□□□□ -0.88
CHD2-228ENST00000637613 PTGER2P43116 358 aa9.54□□□□□ -0.88
CHD2-228ENST00000637613 VARS2Q5ST30 1063 aaKnown RBP9.52□□□□□ -0.89
CHD2-228ENST00000637613 DPY19L2Q6NUT2 758 aa9.51□□□□□ -0.89
CHD2-228ENST00000637613 G3V3G9 751 aa9.5□□□□□ -0.89
CHD2-228ENST00000637613 BOLA1Q9Y3E2 137 aa9.5□□□□□ -0.89
CHD2-228ENST00000637613 PSEN1P49768 467 aa9.49□□□□□ -0.89
CHD2-228ENST00000637613 RIMBP2O15034 1052 aa9.48□□□□□ -0.89
CHD2-228ENST00000637613 ZNF687Q8N1G0 1237 aa9.48□□□□□ -0.89
CHD2-228ENST00000637613 CHRM1P11229 460 aaPredicted RBP9.46□□□□□ -0.9
CHD2-228ENST00000637613 GSE1Q14687 1217 aa9.44□□□□□ -0.9
CHD2-228ENST00000637613 ZSWIM6Q9HCJ5 1215 aa9.43□□□□□ -0.9
CHD2-228ENST00000637613 PDAP1Q13442 181 aaKnown RBP9.39□□□□□ -0.91
CHD2-228ENST00000637613 GPR153Q6NV75 609 aa9.36□□□□□ -0.91
CHD2-228ENST00000637613 ANKRD13DQ6ZTN6 518 aa9.36□□□□□ -0.91
CHD2-228ENST00000637613 CABP2Q9NPB3 220 aa9.36□□□□□ -0.91
CHD2-228ENST00000637613 PLA2G2EQ9NZK7 142 aa9.35□□□□□ -0.91
CHD2-228ENST00000637613 RTN4Q9NQC3 1192 aaKnown RBP9.33□□□□□ -0.92
CHD2-228ENST00000637613 LSM11P83369 360 aaKnown RBP eCLIP9.31□□□□□ -0.92
CHD2-228ENST00000637613 AMER1Q5JTC6 1135 aaPredicted RBP9.31□□□□□ -0.92
CHD2-228ENST00000637613 SLC24A1O60721 1099 aa9.28□□□□□ -0.92
CHD2-228ENST00000637613 TMEM92Q6UXU6 159 aa9.28□□□□□ -0.92
CHD2-228ENST00000637613 HCSTQ9UBK5 93 aa9.26□□□□□ -0.93
CHD2-228ENST00000637613 KLHL34Q8N239 644 aa9.25□□□□□ -0.93
CHD2-228ENST00000637613 FBXO3Q9UK99 471 aa9.25□□□□□ -0.93
CHD2-228ENST00000637613 ZNF316A6NFI3 1004 aaPredicted RBP9.24□□□□□ -0.93
CHD2-228ENST00000637613 MICALL2Q8IY33 904 aa9.24□□□□□ -0.93
CHD2-228ENST00000637613 ARSIQ5FYB1 569 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms