RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 ATMINO43313 823 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-215ENST00000637285 ASTLQ6HA08 431 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-215ENST00000637285 SLC39A7Q92504 469 aa6.74□□□□□ -1.33
SCN1A-215ENST00000637285 TSPYL2Q9H2G4 693 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-215ENST00000637285 C7P10643 843 aa6.73□□□□□ -1.33
SCN1A-215ENST00000637285 POTEJP0CG39 1038 aa6.72□□□□□ -1.33
SCN1A-215ENST00000637285 MAMSTRQ6ZN01 415 aa6.7□□□□□ -1.34
SCN1A-215ENST00000637285 FAM163AQ96GL9 167 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-215ENST00000637285 ATN1P54259 1190 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-215ENST00000637285 SCUBE2Q9NQ36 999 aa6.67□□□□□ -1.34
SCN1A-215ENST00000637285 PCDH10Q9P2E7 1040 aa6.66□□□□□ -1.34
SCN1A-215ENST00000637285 CCDC61Q9Y6R9 512 aa6.66□□□□□ -1.34
SCN1A-215ENST00000637285 KIF12Q96FN5 646 aa6.65□□□□□ -1.34
SCN1A-215ENST00000637285 TRPC6Q9Y210 931 aa6.64□□□□□ -1.35
SCN1A-215ENST00000637285 LCE2DQ5TA82 110 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-215ENST00000637285 BMP2KQ9NSY1 1161 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-215ENST00000637285 POTEFA5A3E0 1075 aa6.61□□□□□ -1.35
SCN1A-215ENST00000637285 MAP3K13O43283 966 aa6.61□□□□□ -1.35
SCN1A-215ENST00000637285 PLEKHG5O94827 1062 aa6.6□□□□□ -1.35
SCN1A-215ENST00000637285 MIER1Q8N108 512 aa6.6□□□□□ -1.35
SCN1A-215ENST00000637285 SEC24BO95487 1268 aa6.59□□□□□ -1.35
SCN1A-215ENST00000637285 PROM2Q8N271 834 aa6.59□□□□□ -1.35
SCN1A-215ENST00000637285 TIE1P35590 1138 aa6.58□□□□□ -1.36
SCN1A-215ENST00000637285 RASEFQ8IZ41 740 aa6.58□□□□□ -1.36
SCN1A-215ENST00000637285 COLQQ9Y215 455 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-215ENST00000637285 TTLL13PA6NNM8 815 aa6.56□□□□□ -1.36
SCN1A-215ENST00000637285 PLCD3Q8N3E9 789 aa6.53□□□□□ -1.36
SCN1A-215ENST00000637285 TRIM35Q9UPQ4 493 aa6.53□□□□□ -1.36
SCN1A-215ENST00000637285 CDAN1Q8IWY9 1227 aa6.52□□□□□ -1.37
SCN1A-215ENST00000637285 PCDHB13Q9Y5F0 798 aa6.52□□□□□ -1.37
SCN1A-215ENST00000637285 SLAIN1Q8ND83 568 aa6.5□□□□□ -1.37
SCN1A-215ENST00000637285 IER5LQ5T953 404 aa6.49□□□□□ -1.37
SCN1A-215ENST00000637285 IFNL1Q8IU54 200 aa6.47□□□□□ -1.37
SCN1A-215ENST00000637285 SGIP1Q9BQI5 828 aa6.47□□□□□ -1.37
SCN1A-215ENST00000637285 TMEM106CQ9BVX2 250 aa6.47□□□□□ -1.37
SCN1A-215ENST00000637285 ST18O60284 1047 aa6.46□□□□□ -1.38
SCN1A-215ENST00000637285 PLCG2P16885 1265 aa6.46□□□□□ -1.38
SCN1A-215ENST00000637285 NUBP1P53384 320 aa6.44□□□□□ -1.38
SCN1A-215ENST00000637285 ZBTB47Q9UFB7 747 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-215ENST00000637285 FAM212AQ96EL1 285 aa6.43□□□□□ -1.38
SCN1A-215ENST00000637285 IRX5P78411 483 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-215ENST00000637285 DCAF8Q5TAQ9 597 aa6.38□□□□□ -1.39
SCN1A-215ENST00000637285 PYGBP11216 843 aa6.37□□□□□ -1.39
SCN1A-215ENST00000637285 MARVELD3Q96A59 401 aa6.37□□□□□ -1.39
SCN1A-215ENST00000637285 OCEL1Q9H607 264 aa6.37□□□□□ -1.39
SCN1A-215ENST00000637285 MMRN1Q13201 1228 aa6.36□□□□□ -1.39
SCN1A-215ENST00000637285 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.36□□□□□ -1.39
SCN1A-215ENST00000637285 SNPHO15079 494 aa6.35□□□□□ -1.39
SCN1A-215ENST00000637285 SPNS2Q8IVW8 549 aa6.35□□□□□ -1.39
SCN1A-215ENST00000637285 TMEM121BQ9BXQ6 578 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-215ENST00000637285 PCDHB8Q9UN66 801 aa6.35□□□□□ -1.39
SCN1A-215ENST00000637285 FKBP8Q14318 412 aa6.31□□□□□ -1.4
SCN1A-215ENST00000637285 C3orf67Q6ZVT6 689 aa6.3□□□□□ -1.4
SCN1A-215ENST00000637285 EMP3P54852 163 aa6.29□□□□□ -1.4
SCN1A-215ENST00000637285 GOLGA2Q08379 1002 aa6.29□□□□□ -1.4
SCN1A-215ENST00000637285 MKRN3Q13064 507 aaKnown RBP6.28□□□□□ -1.4
SCN1A-215ENST00000637285 PDCD7Q8N8D1 485 aaKnown RBP6.26□□□□□ -1.41
SCN1A-215ENST00000637285 L3MBTL3Q96JM7 780 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-215ENST00000637285 FAM205CA6NFA0 338 aa6.25□□□□□ -1.41
SCN1A-215ENST00000637285 KLHL34Q8N239 644 aa6.25□□□□□ -1.41
SCN1A-215ENST00000637285 ZNF467Q7Z7K2 595 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-215ENST00000637285 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.24□□□□□ -1.412e-7■■□□□ 13.7
SCN1A-215ENST00000637285 POTEB3A0JP26 581 aa6.23□□□□□ -1.41
SCN1A-215ENST00000637285 POTEBQ6S5H4 581 aa6.23□□□□□ -1.41
SCN1A-215ENST00000637285 HS3ST6Q96QI5 342 aa6.23□□□□□ -1.41
SCN1A-215ENST00000637285 GSE1Q14687 1217 aa6.22□□□□□ -1.41
SCN1A-215ENST00000637285 KRTAP3-3Q9BYR6 98 aa6.22□□□□□ -1.41
SCN1A-215ENST00000637285 KRTAP3-2Q9BYR7 98 aa6.22□□□□□ -1.41
SCN1A-215ENST00000637285 PSEN1P49768 467 aa6.21□□□□□ -1.42
SCN1A-215ENST00000637285 FBXO3Q9UK99 471 aa6.21□□□□□ -1.42
SCN1A-215ENST00000637285 DPY19L2Q6NUT2 758 aa6.19□□□□□ -1.42
SCN1A-215ENST00000637285 G3V3G9 751 aa6.18□□□□□ -1.42
SCN1A-215ENST00000637285 CHRM1P11229 460 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-215ENST00000637285 VASPP50552 380 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-215ENST00000637285 PDAP1Q13442 181 aaKnown RBP6.15□□□□□ -1.42
SCN1A-215ENST00000637285 ZNF710Q8N1W2 664 aa6.15□□□□□ -1.42
SCN1A-215ENST00000637285 CABP2Q9NPB3 220 aa6.15□□□□□ -1.42
SCN1A-215ENST00000637285 HOXB3P14651 431 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-215ENST00000637285 BOLA1Q9Y3E2 137 aa6.14□□□□□ -1.43
SCN1A-215ENST00000637285 ERBB3P21860 1342 aa6.13□□□□□ -1.43
SCN1A-215ENST00000637285 CIZ1Q9ULV3 898 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-215ENST00000637285 HOXB1P14653 301 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-215ENST00000637285 ILDR1Q86SU0 546 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-215ENST00000637285 DOK7Q18PE1 504 aa6.1□□□□□ -1.43
SCN1A-215ENST00000637285 RNF166Q96A37 237 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-215ENST00000637285 VARS2Q5ST30 1063 aaKnown RBP6.08□□□□□ -1.44
SCN1A-215ENST00000637285 RIMBP2O15034 1052 aa6.07□□□□□ -1.44
SCN1A-215ENST00000637285 SPOCK2Q92563 424 aa6.06□□□□□ -1.44
SCN1A-215ENST00000637285 MYT1LQ9UL68 1186 aa6.05□□□□□ -1.44
SCN1A-215ENST00000637285 EFCAB3Q8N7B9 438 aa6.04□□□□□ -1.44
SCN1A-215ENST00000637285 IFNLR1Q8IU57 520 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-215ENST00000637285 TMEM92Q6UXU6 159 aa6□□□□□ -1.45
SCN1A-215ENST00000637285 MICALL2Q8IY33 904 aa6□□□□□ -1.45
SCN1A-215ENST00000637285 ZNF687Q8N1G0 1237 aa6□□□□□ -1.45
SCN1A-215ENST00000637285 ANKRD13DQ6ZTN6 518 aa5.99□□□□□ -1.45
SCN1A-215ENST00000637285 ZSWIM6Q9HCJ5 1215 aa5.99□□□□□ -1.45
SCN1A-215ENST00000637285 GPR153Q6NV75 609 aa5.98□□□□□ -1.45
SCN1A-215ENST00000637285 ARSIQ5FYB1 569 aa5.97□□□□□ -1.45
SCN1A-215ENST00000637285 PTGER2P43116 358 aa5.95□□□□□ -1.46
SCN1A-215ENST00000637285 SOX12O15370 315 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms