RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 FAM9BQ8IZU0 186 aa7.3□□□□□ -1.24
SCN1A-209ENST00000635750 CCDC136Q96JN2 1154 aa7.3□□□□□ -1.24
SCN1A-209ENST00000635750 PTMAP06454 111 aaKnown RBP7.29□□□□□ -1.24
SCN1A-209ENST00000635750 EIF4G2P78344 907 aaKnown RBP eCLIP7.29□□□□□ -1.24
SCN1A-209ENST00000635750 TSPY4P0CV99 314 aa7.28□□□□□ -1.24
SCN1A-209ENST00000635750 TSPY10P0CW01 314 aa7.28□□□□□ -1.24
SCN1A-209ENST00000635750 HNRNPUQ00839 825 aaKnown RBP eCLIP7.28□□□□□ -1.24
SCN1A-209ENST00000635750 DNTTIP2Q5QJE6 756 aaKnown RBP7.28□□□□□ -1.24
SCN1A-209ENST00000635750 PRM3Q9NNZ6 103 aa7.28□□□□□ -1.24
SCN1A-209ENST00000635750 NRDCO43847 1150 aa7.27□□□□□ -1.25
SCN1A-209ENST00000635750 L1TD1Q5T7N2 865 aaKnown RBP7.27□□□□□ -1.25
SCN1A-209ENST00000635750 DDRGK1Q96HY6 314 aa7.26□□□□□ -1.25
SCN1A-209ENST00000635750 FGD1P98174 961 aa7.26□□□□□ -1.25
SCN1A-209ENST00000635750 FKBP8Q14318 412 aa7.26□□□□□ -1.25
SCN1A-209ENST00000635750 CFAP53Q96M91 514 aa7.25□□□□□ -1.25
SCN1A-209ENST00000635750 KDM2AQ9Y2K7 1162 aa7.25□□□□□ -1.25
SCN1A-209ENST00000635750 TMX4Q9H1E5 349 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-209ENST00000635750 LMOD2Q6P5Q4 547 aa7.25□□□□□ -1.25
SCN1A-209ENST00000635750 NBR1Q14596 966 aa7.24□□□□□ -1.25
SCN1A-209ENST00000635750 KRI1Q8N9T8 703 aaKnown RBP7.24□□□□□ -1.25
SCN1A-209ENST00000635750 TAOK2Q9UL54 1235 aa7.24□□□□□ -1.25
SCN1A-209ENST00000635750 ISY1Q9ULR0 285 aaKnown RBP7.23□□□□□ -1.25
SCN1A-209ENST00000635750 KIAA2012Q0VF49 1180 aa7.23□□□□□ -1.25
SCN1A-209ENST00000635750 OS9Q13438 667 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-209ENST00000635750 FTSJ3Q8IY81 847 aaKnown RBP7.23□□□□□ -1.25
SCN1A-209ENST00000635750 NAP1L2Q9ULW6 460 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-209ENST00000635750 TPRNQ4KMQ1 711 aa7.22□□□□□ -1.25
SCN1A-209ENST00000635750 SENP3Q9H4L4 574 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-209ENST00000635750 PPM1GO15355 546 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-209ENST00000635750 KCNJ4P48050 445 aa7.22□□□□□ -1.25
SCN1A-209ENST00000635750 CHMP7Q8WUX9 453 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-209ENST00000635750 CHMP4BQ9H444 224 aaKnown RBP7.21□□□□□ -1.25
SCN1A-209ENST00000635750 CDCA8Q53HL2 280 aa7.2□□□□□ -1.26
SCN1A-209ENST00000635750 CHAF1AQ13111 956 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-209ENST00000635750 PNNQ9H307 717 aaKnown RBP7.2□□□□□ -1.26
SCN1A-209ENST00000635750 LAS1LQ9Y4W2 734 aaKnown RBP7.19□□□□□ -1.26
SCN1A-209ENST00000635750 MAPK8IP3Q9UPT6 1336 aa7.18□□□□□ -1.26
SCN1A-209ENST00000635750 NOC3LQ8WTT2 800 aaKnown RBP7.18□□□□□ -1.26
SCN1A-209ENST00000635750 CHIC2Q9UKJ5 165 aa7.18□□□□□ -1.26
SCN1A-209ENST00000635750 MRS2Q9HD23 443 aa7.18□□□□□ -1.26
SCN1A-209ENST00000635750 PLCB2Q00722 1185 aa7.18□□□□□ -1.26
SCN1A-209ENST00000635750 ACIN1Q9UKV3 1341 aaKnown RBP7.18□□□□□ -1.26
SCN1A-209ENST00000635750 GOLGA6L4A6NEF3 574 aa7.18□□□□□ -1.26
SCN1A-209ENST00000635750 DDX10Q13206 875 aaKnown RBP7.17□□□□□ -1.26
SCN1A-209ENST00000635750 GNL2Q13823 731 aaKnown RBP7.17□□□□□ -1.26
SCN1A-209ENST00000635750 NUDCQ9Y266 331 aa7.17□□□□□ -1.26
SCN1A-209ENST00000635750 POGKQ9P215 609 aa7.16□□□□□ -1.26
SCN1A-209ENST00000635750 HDGFP51858 240 aaKnown RBP7.16□□□□□ -1.26
SCN1A-209ENST00000635750 KCNH8Q96L42 1107 aa7.16□□□□□ -1.26
SCN1A-209ENST00000635750 KNSTRNQ9Y448 316 aa7.16□□□□□ -1.26
SCN1A-209ENST00000635750 MTUS2Q5JR59 1369 aa7.15□□□□□ -1.26
SCN1A-209ENST00000635750 TRHP20396 242 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-209ENST00000635750 CSRNP3Q8WYN3 585 aa7.15□□□□□ -1.27
SCN1A-209ENST00000635750 MS4A1P11836 297 aa7.14□□□□□ -1.27
SCN1A-209ENST00000635750 G3V3G9 751 aa7.14□□□□□ -1.27
SCN1A-209ENST00000635750 DCAF8Q5TAQ9 597 aa7.14□□□□□ -1.27
SCN1A-209ENST00000635750 HSP90AB1P08238 724 aaKnown RBP7.14□□□□□ -1.27
SCN1A-209ENST00000635750 MCCP23508 829 aa7.14□□□□□ -1.27
SCN1A-209ENST00000635750 DRC7Q8IY82 874 aa7.13□□□□□ -1.27
SCN1A-209ENST00000635750 CFAP44Q96MT7 982 aa7.12□□□□□ -1.27
SCN1A-209ENST00000635750 PLEKHD1A6NEE1 506 aa7.11□□□□□ -1.27
SCN1A-209ENST00000635750 A0A0U1RQG5 324 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-209ENST00000635750 ERICH6BQ5W0A0 696 aa7.1□□□□□ -1.27
SCN1A-209ENST00000635750 CEP89Q96ST8 783 aa7.1□□□□□ -1.27
SCN1A-209ENST00000635750 CCDC34Q96HJ3 373 aa7.09□□□□□ -1.27
SCN1A-209ENST00000635750 RGL3Q3MIN7 710 aa7.09□□□□□ -1.27
SCN1A-209ENST00000635750 USP35Q9P2H5 1018 aa7.09□□□□□ -1.27
SCN1A-209ENST00000635750 RTF1Q92541 710 aaKnown RBP7.09□□□□□ -1.27
SCN1A-209ENST00000635750 NAP1L5Q96NT1 182 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-209ENST00000635750 RSF1Q96T23 1441 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-209ENST00000635750 KIAA1211Q6ZU35 1233 aa7.08□□□□□ -1.28
SCN1A-209ENST00000635750 CCDC9Q9Y3X0 531 aaKnown RBP7.08□□□□□ -1.28
SCN1A-209ENST00000635750 TPM4P67936 248 aa7.07□□□□□ -1.28
SCN1A-209ENST00000635750 NEUROD2Q15784 382 aa7.07□□□□□ -1.28
SCN1A-209ENST00000635750 HTATSF1O43719 755 aaKnown RBP7.07□□□□□ -1.28
SCN1A-209ENST00000635750 U2SURPO15042 1029 aaKnown RBP7.07□□□□□ -1.28
SCN1A-209ENST00000635750 DCAF8L1A6NGE4 600 aa7.07□□□□□ -1.28
SCN1A-209ENST00000635750 CNKSR2Q8WXI2 1034 aa7.06□□□□□ -1.28
SCN1A-209ENST00000635750 KANK1Q14678 1352 aa7.06□□□□□ -1.28
SCN1A-209ENST00000635750 MSNP26038 577 aaKnown RBP7.06□□□□□ -1.28
SCN1A-209ENST00000635750 HSCBQ8IWL3 235 aa7.06□□□□□ -1.28
SCN1A-209ENST00000635750 CHMP4AQ9BY43 222 aa7.06□□□□□ -1.28
SCN1A-209ENST00000635750 FRAT1Q92837 279 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-209ENST00000635750 TAF7LQ5H9L4 462 aa7.05□□□□□ -1.28
SCN1A-209ENST00000635750 GOLGA6L1Q8N7Z2 621 aa7.05□□□□□ -1.28
SCN1A-209ENST00000635750 CSB-PGBD3P0DP91 1061 aa7.05□□□□□ -1.28
SCN1A-209ENST00000635750 IRX6P78412 446 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-209ENST00000635750 GORABQ5T7V8 394 aa7.05□□□□□ -1.28
SCN1A-209ENST00000635750 SCRIBQ14160 1630 aa7.04□□□□□ -1.28
SCN1A-209ENST00000635750 VPS53Q5VIR6 699 aa7.04□□□□□ -1.28
SCN1A-209ENST00000635750 GPATCH3Q96I76 525 aa7.04□□□□□ -1.28
SCN1A-209ENST00000635750 ZNF330Q9Y3S2 320 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-209ENST00000635750 RRP7BPQ9NSQ0 103 aa7.04□□□□□ -1.28
SCN1A-209ENST00000635750 PDE4CQ08493 712 aa7.04□□□□□ -1.28
SCN1A-209ENST00000635750 RASSF8Q8NHQ8 419 aa7.03□□□□□ -1.28
SCN1A-209ENST00000635750 ERCC6Q03468 1493 aa7.03□□□□□ -1.28
SCN1A-209ENST00000635750 SOX12O15370 315 aa7.03□□□□□ -1.28
SCN1A-209ENST00000635750 PAK3O75914 559 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-209ENST00000635750 TCEAL9Q9UHQ7 104 aa7.03□□□□□ -1.28
SCN1A-209ENST00000635750 MARCH6O60337 910 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms