RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 MTUS2Q5JR59 1369 aa15.61■□□□□ 0.09
SHPRH-211ENST00000629427 MRS2Q9HD23 443 aa15.6■□□□□ 0.09
SHPRH-211ENST00000629427 ARID4BQ4LE39 1312 aaPredicted RBP15.59■□□□□ 0.09
SHPRH-211ENST00000629427 HIRIP3Q9BW71 556 aaPredicted RBP15.56■□□□□ 0.08
SHPRH-211ENST00000629427 TULP1O00294 542 aaPredicted RBP15.54■□□□□ 0.08
SHPRH-211ENST00000629427 IRX6P78412 446 aaPredicted RBP15.54■□□□□ 0.08
SHPRH-211ENST00000629427 RRP7BPQ9NSQ0 103 aa15.52■□□□□ 0.08
SHPRH-211ENST00000629427 PPM1GO15355 546 aaPredicted RBP15.52■□□□□ 0.07
SHPRH-211ENST00000629427 RGL3Q3MIN7 710 aa15.5■□□□□ 0.07
SHPRH-211ENST00000629427 NCLP19338 710 aaKnown RBP15.49■□□□□ 0.07
SHPRH-211ENST00000629427 GLIPR1L2Q4G1C9 344 aa15.48■□□□□ 0.07
SHPRH-211ENST00000629427 NPHP1O15259 732 aa15.47■□□□□ 0.07
SHPRH-211ENST00000629427 EIF4G2P78344 907 aaKnown RBP eCLIP15.46■□□□□ 0.07
SHPRH-211ENST00000629427 LMOD2Q6P5Q4 547 aa15.45■□□□□ 0.06
SHPRH-211ENST00000629427 TPRNQ4KMQ1 711 aa15.44■□□□□ 0.06
SHPRH-211ENST00000629427 LAS1LQ9Y4W2 734 aaKnown RBP15.43■□□□□ 0.06
SHPRH-211ENST00000629427 PLEKHD1A6NEE1 506 aa15.43■□□□□ 0.06
SHPRH-211ENST00000629427 BECN1Q14457 450 aa15.43■□□□□ 0.06
SHPRH-211ENST00000629427 CFAP53Q96M91 514 aa15.42■□□□□ 0.06
SHPRH-211ENST00000629427 ZRSR1Q15695 479 aaKnown RBP15.41■□□□□ 0.06
SHPRH-211ENST00000629427 SENP3-EIF4A1A0A087X0R7 540 aa15.4■□□□□ 0.06
SHPRH-211ENST00000629427 CASC1Q6TDU7 716 aa15.4■□□□□ 0.06
SHPRH-211ENST00000629427 TAOK2Q9UL54 1235 aa15.4■□□□□ 0.06
SHPRH-211ENST00000629427 FTSJ3Q8IY81 847 aaKnown RBP15.39■□□□□ 0.05
SHPRH-211ENST00000629427 TRIM44Q96DX7 344 aaPredicted RBP15.39■□□□□ 0.05
SHPRH-211ENST00000629427 KNSTRNQ9Y448 316 aa15.38■□□□□ 0.05
SHPRH-211ENST00000629427 GOLGA6L22H0YM25 854 aa15.37■□□□□ 0.05
SHPRH-211ENST00000629427 DDRGK1Q96HY6 314 aa15.36■□□□□ 0.05
SHPRH-211ENST00000629427 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
SHPRH-211ENST00000629427 NEUROD2Q15784 382 aa15.34■□□□□ 0.05
SHPRH-211ENST00000629427 CDCA8Q53HL2 280 aa15.34■□□□□ 0.05
SHPRH-211ENST00000629427 POGKQ9P215 609 aa15.34■□□□□ 0.05
SHPRH-211ENST00000629427 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.04
SHPRH-211ENST00000629427 CLIP1P30622 1438 aa15.33■□□□□ 0.04
SHPRH-211ENST00000629427 DCAF1Q9Y4B6 1507 aa15.33■□□□□ 0.04
SHPRH-211ENST00000629427 MIER1Q8N108 512 aa15.32■□□□□ 0.04
SHPRH-211ENST00000629427 MAPK8IP3Q9UPT6 1336 aa15.31■□□□□ 0.04
SHPRH-211ENST00000629427 PTMAP06454 111 aaKnown RBP15.31■□□□□ 0.04
SHPRH-211ENST00000629427 TNNT2P45379 298 aaPredicted RBP15.31■□□□□ 0.04
SHPRH-211ENST00000629427 CFDP1Q9UEE9 299 aaPredicted RBP15.3■□□□□ 0.04
SHPRH-211ENST00000629427 GOLGA2Q08379 1002 aa15.29■□□□□ 0.04
SHPRH-211ENST00000629427 OS9Q13438 667 aaPredicted RBP15.28■□□□□ 0.04
SHPRH-211ENST00000629427 CARD11Q9BXL7 1154 aa15.28■□□□□ 0.04
SHPRH-211ENST00000629427 ERCC6Q03468 1493 aa15.28■□□□□ 0.04
SHPRH-211ENST00000629427 TRHP20396 242 aaPredicted RBP15.27■□□□□ 0.04
SHPRH-211ENST00000629427 DNTTIP2Q5QJE6 756 aaKnown RBP15.27■□□□□ 0.04
SHPRH-211ENST00000629427 RB1CC1Q8TDY2 1594 aa15.27■□□□□ 0.03
SHPRH-211ENST00000629427 ANP32EQ9BTT0 268 aa15.27■□□□□ 0.03
SHPRH-211ENST00000629427 NUDCQ9Y266 331 aa15.26■□□□□ 0.03
SHPRH-211ENST00000629427 NAP1L2Q9ULW6 460 aaPredicted RBP15.26■□□□□ 0.03
SHPRH-211ENST00000629427 FGD1P98174 961 aa15.25■□□□□ 0.03
SHPRH-211ENST00000629427 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
SHPRH-211ENST00000629427 U2SURPO15042 1029 aaKnown RBP15.23■□□□□ 0.03
SHPRH-211ENST00000629427 FRAT1Q92837 279 aaPredicted RBP15.23■□□□□ 0.03
SHPRH-211ENST00000629427 KCNJ4P48050 445 aa15.22■□□□□ 0.03
SHPRH-211ENST00000629427 CC2D1BQ5T0F9 858 aaKnown RBP15.21■□□□□ 0.03
SHPRH-211ENST00000629427 SOX12O15370 315 aa15.21■□□□□ 0.03
SHPRH-211ENST00000629427 PLCB2Q00722 1185 aa15.21■□□□□ 0.03
SHPRH-211ENST00000629427 NCBP3Q53F19 620 aaKnown RBP15.2■□□□□ 0.02
SHPRH-211ENST00000629427 MLECQ14165 292 aa15.2■□□□□ 0.02
SHPRH-211ENST00000629427 GOLGA3Q08378 1498 aa15.19■□□□□ 0.02
SHPRH-211ENST00000629427 SUPT16HQ9Y5B9 1047 aaKnown RBP15.19■□□□□ 0.02
SHPRH-211ENST00000629427 PNNQ9H307 717 aaKnown RBP15.18■□□□□ 0.02
SHPRH-211ENST00000629427 HSP90AB1P08238 724 aaKnown RBP15.16■□□□□ 0.02
SHPRH-211ENST00000629427 RGS3P49796 1198 aa15.16■□□□□ 0.02
SHPRH-211ENST00000629427 CLSTN1O94985 981 aa15.15■□□□□ 0.02
SHPRH-211ENST00000629427 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
SHPRH-211ENST00000629427 ISY1Q9ULR0 285 aaKnown RBP15.14■□□□□ 0.01
SHPRH-211ENST00000629427 CHMP4BQ9H444 224 aaKnown RBP15.13■□□□□ 0.01
SHPRH-211ENST00000629427 EIF4G1Q04637 1599 aaKnown RBP15.13■□□□□ 0.01
SHPRH-211ENST00000629427 SRPK2P78362 688 aaKnown RBP15.13■□□□□ 0.01
SHPRH-211ENST00000629427 GOLGA6L6A8MZA4 724 aa15.12■□□□□ 0.01
SHPRH-211ENST00000629427 CEP162Q5TB80 1403 aa15.12■□□□□ 0.01
SHPRH-211ENST00000629427 HDGFP51858 240 aaKnown RBP15.12■□□□□ 0.01
SHPRH-211ENST00000629427 KANK1Q14678 1352 aa15.12■□□□□ 0.01
SHPRH-211ENST00000629427 SAFB2Q14151 953 aaKnown RBP eCLIP15.11■□□□□ 0.011e-6■□□□□ 10.6
SHPRH-211ENST00000629427 KIF27Q86VH2 1401 aa15.1■□□□□ 0.01
SHPRH-211ENST00000629427 MS4A1P11836 297 aa15.09■□□□□ 0.01
SHPRH-211ENST00000629427 DCAF11Q8TEB1 546 aa15.08■□□□□ 0
SHPRH-211ENST00000629427 TMF1P82094 1093 aa15.07■□□□□ 0
SHPRH-211ENST00000629427 RTF1Q92541 710 aaKnown RBP15.07■□□□□ 0
SHPRH-211ENST00000629427 GOLGA6L4A6NEF3 574 aa15.07■□□□□ 0
SHPRH-211ENST00000629427 PAK3O75914 559 aaPredicted RBP15.06■□□□□ 0
SHPRH-211ENST00000629427 STK26Q9P289 416 aa15.05■□□□□ -0
SHPRH-211ENST00000629427 SIN3AQ96ST3 1273 aa15.05■□□□□ -0
SHPRH-211ENST00000629427 EEA1Q15075 1411 aa15.04■□□□□ -0
SHPRH-211ENST00000629427 WRNQ14191 1432 aaPredicted RBP eCLIP15.04■□□□□ -0
SHPRH-211ENST00000629427 CCNB3Q8WWL7 1395 aa15.04■□□□□ -0
SHPRH-211ENST00000629427 NRDCO43847 1150 aa15.03■□□□□ -0
SHPRH-211ENST00000629427 NAP1L5Q96NT1 182 aaPredicted RBP15.03■□□□□ -0
SHPRH-211ENST00000629427 MCCP23508 829 aa15.02□□□□□ -0.01
SHPRH-211ENST00000629427 MORC1Q86VD1 984 aa15.02□□□□□ -0.01
SHPRH-211ENST00000629427 GNL2Q13823 731 aaKnown RBP15.01□□□□□ -0.01
SHPRH-211ENST00000629427 ZNF330Q9Y3S2 320 aaPredicted RBP15.01□□□□□ -0.01
SHPRH-211ENST00000629427 HSCBQ8IWL3 235 aa15□□□□□ -0.01
SHPRH-211ENST00000629427 GGT6Q6P531 493 aa15□□□□□ -0.01
SHPRH-211ENST00000629427 CEP164Q9UPV0 1460 aa14.99□□□□□ -0.01
SHPRH-211ENST00000629427 DRC7Q8IY82 874 aa14.98□□□□□ -0.01
SHPRH-211ENST00000629427 SPRYD3Q8NCJ5 442 aa14.98□□□□□ -0.01
SHPRH-211ENST00000629427 PPP4R2Q9NY27 417 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms