RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 UPF2Q9HAU5 1272 aaKnown RBP15.26■□□□□ 0.03
CLIP1-219ENST00000620786 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.24■□□□□ 0.03
CLIP1-219ENST00000620786 NACADO15069 1562 aa15.24■□□□□ 0.03
CLIP1-219ENST00000620786 TRHP20396 242 aaPredicted RBP15.23■□□□□ 0.03
CLIP1-219ENST00000620786 RGL3Q3MIN7 710 aa15.21■□□□□ 0.03
CLIP1-219ENST00000620786 CFDP1Q9UEE9 299 aaPredicted RBP15.2■□□□□ 0.02
CLIP1-219ENST00000620786 FKBP8Q14318 412 aa15.19■□□□□ 0.02
CLIP1-219ENST00000620786 MYH16Q9H6N6 1097 aa15.18■□□□□ 0.02
CLIP1-219ENST00000620786 MRS2Q9HD23 443 aa15.18■□□□□ 0.02
CLIP1-219ENST00000620786 GOLGA3Q08378 1498 aa15.17■□□□□ 0.02
CLIP1-219ENST00000620786 ANP32BQ92688 251 aaKnown RBP15.16■□□□□ 0.02
CLIP1-219ENST00000620786 WRNQ14191 1432 aaPredicted RBP eCLIP15.15■□□□□ 0.029e-6■■■■■ 50.1
CLIP1-219ENST00000620786 KIF27Q86VH2 1401 aa15.15■□□□□ 0.02
CLIP1-219ENST00000620786 ARXQ96QS3 562 aa15.15■□□□□ 0.02
CLIP1-219ENST00000620786 EIF4G2P78344 907 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLIP1-219ENST00000620786 LMOD2Q6P5Q4 547 aa15.13■□□□□ 0.01
CLIP1-219ENST00000620786 HIRIP3Q9BW71 556 aaPredicted RBP15.13■□□□□ 0.01
CLIP1-219ENST00000620786 PPM1GO15355 546 aaPredicted RBP15.11■□□□□ 0.01
CLIP1-219ENST00000620786 DCAF1Q9Y4B6 1507 aa15.11■□□□□ 0.01
CLIP1-219ENST00000620786 ACIN1Q9UKV3 1341 aaKnown RBP15.11■□□□□ 0.01
CLIP1-219ENST00000620786 EEA1Q15075 1411 aa15.1■□□□□ 0.01
CLIP1-219ENST00000620786 EIF4G1Q04637 1599 aaKnown RBP15.1■□□□□ 0.01
CLIP1-219ENST00000620786 CCDC136Q96JN2 1154 aa15.1■□□□□ 0.01
CLIP1-219ENST00000620786 CFAP53Q96M91 514 aa15.09■□□□□ 0.01
CLIP1-219ENST00000620786 POGKQ9P215 609 aa15.09■□□□□ 0.01
CLIP1-219ENST00000620786 MLECQ14165 292 aa15.07■□□□□ 0
CLIP1-219ENST00000620786 CDCA8Q53HL2 280 aa15.06■□□□□ 0
CLIP1-219ENST00000620786 CEP162Q5TB80 1403 aa15.05■□□□□ 0
CLIP1-219ENST00000620786 KNSTRNQ9Y448 316 aa15.04■□□□□ -0
CLIP1-219ENST00000620786 NPHP1O15259 732 aa15.02■□□□□ -0
CLIP1-219ENST00000620786 CARD11Q9BXL7 1154 aa15.02□□□□□ -0.01
CLIP1-219ENST00000620786 CCNB3Q8WWL7 1395 aa15.01□□□□□ -0.01
CLIP1-219ENST00000620786 CEP164Q9UPV0 1460 aa15□□□□□ -0.01
CLIP1-219ENST00000620786 KANK1Q14678 1352 aa15□□□□□ -0.01
CLIP1-219ENST00000620786 LAS1LQ9Y4W2 734 aaKnown RBP14.98□□□□□ -0.01
CLIP1-219ENST00000620786 BAZ1AQ9NRL2 1556 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-219ENST00000620786 MAPK8IP3Q9UPT6 1336 aa14.97□□□□□ -0.01
CLIP1-219ENST00000620786 CDK11BP21127 795 aaKnown RBP14.97□□□□□ -0.01
CLIP1-219ENST00000620786 HDGFP51858 240 aaKnown RBP14.96□□□□□ -0.01
CLIP1-219ENST00000620786 IRX6P78412 446 aaPredicted RBP14.96□□□□□ -0.02
CLIP1-219ENST00000620786 NUDCQ9Y266 331 aa14.94□□□□□ -0.02
CLIP1-219ENST00000620786 CUX2O14529 1486 aa14.93□□□□□ -0.02
CLIP1-219ENST00000620786 TNNT2P45379 298 aaPredicted RBP14.93□□□□□ -0.02
CLIP1-219ENST00000620786 NEUROD2Q15784 382 aa14.92□□□□□ -0.02
CLIP1-219ENST00000620786 SENP3-EIF4A1A0A087X0R7 540 aa14.91□□□□□ -0.02
CLIP1-219ENST00000620786 CARMIL1Q5VZK9 1371 aa14.9□□□□□ -0.02
CLIP1-219ENST00000620786 FTSJ3Q8IY81 847 aaKnown RBP14.9□□□□□ -0.02
CLIP1-219ENST00000620786 TNIKQ9UKE5 1360 aa14.89□□□□□ -0.03
CLIP1-219ENST00000620786 SOX12O15370 315 aa14.87□□□□□ -0.03
CLIP1-219ENST00000620786 GGT6Q6P531 493 aa14.87□□□□□ -0.03
CLIP1-219ENST00000620786 FHAD1B1AJZ9 1412 aa14.87□□□□□ -0.03
CLIP1-219ENST00000620786 U2SURPO15042 1029 aaKnown RBP14.87□□□□□ -0.03
CLIP1-219ENST00000620786 CASC1Q6TDU7 716 aa14.87□□□□□ -0.03
CLIP1-219ENST00000620786 CC2D1BQ5T0F9 858 aaKnown RBP14.86□□□□□ -0.03
CLIP1-219ENST00000620786 PDS5BQ9NTI5 1447 aa14.86□□□□□ -0.03
CLIP1-219ENST00000620786 SRPK2P78362 688 aaKnown RBP14.85□□□□□ -0.03
CLIP1-219ENST00000620786 CARMIL2Q6F5E8 1435 aa14.85□□□□□ -0.03
CLIP1-219ENST00000620786 MIER1Q8N108 512 aa14.85□□□□□ -0.03
CLIP1-219ENST00000620786 SAFB2Q14151 953 aaKnown RBP eCLIP14.84□□□□□ -0.03
CLIP1-219ENST00000620786 NCLP19338 710 aaKnown RBP14.84□□□□□ -0.03
CLIP1-219ENST00000620786 DCAF11Q8TEB1 546 aa14.83□□□□□ -0.03
CLIP1-219ENST00000620786 CECR2Q9BXF3 1484 aa14.83□□□□□ -0.04
CLIP1-219ENST00000620786 TULP1O00294 542 aaPredicted RBP14.83□□□□□ -0.04
CLIP1-219ENST00000620786 OS9Q13438 667 aaPredicted RBP14.82□□□□□ -0.04
CLIP1-219ENST00000620786 PNNQ9H307 717 aaKnown RBP14.82□□□□□ -0.04
CLIP1-219ENST00000620786 NBR1Q14596 966 aa14.81□□□□□ -0.04
CLIP1-219ENST00000620786 TMF1P82094 1093 aa14.81□□□□□ -0.04
CLIP1-219ENST00000620786 SIN3AQ96ST3 1273 aa14.8□□□□□ -0.04
CLIP1-219ENST00000620786 BECN1Q14457 450 aa14.8□□□□□ -0.04
CLIP1-219ENST00000620786 STK26Q9P289 416 aa14.8□□□□□ -0.04
CLIP1-219ENST00000620786 GOLGA2Q08379 1002 aa14.8□□□□□ -0.04
CLIP1-219ENST00000620786 FRAT1Q92837 279 aaPredicted RBP14.77□□□□□ -0.04
CLIP1-219ENST00000620786 SOGA1O94964 1423 aa14.77□□□□□ -0.05
CLIP1-219ENST00000620786 TAOK2Q9UL54 1235 aa14.77□□□□□ -0.05
CLIP1-219ENST00000620786 PAK3O75914 559 aaPredicted RBP14.77□□□□□ -0.05
CLIP1-219ENST00000620786 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.05
CLIP1-219ENST00000620786 SMARCA2P51531 1590 aa14.77□□□□□ -0.05
CLIP1-219ENST00000620786 ZRSR1Q15695 479 aaKnown RBP14.75□□□□□ -0.05
CLIP1-219ENST00000620786 DDRGK1Q96HY6 314 aa14.74□□□□□ -0.05
CLIP1-219ENST00000620786 TPRNQ4KMQ1 711 aa14.74□□□□□ -0.05
CLIP1-219ENST00000620786 MORC1Q86VD1 984 aa14.73□□□□□ -0.05
CLIP1-219ENST00000620786 ARHGAP35Q9NRY4 1499 aa14.73□□□□□ -0.05
CLIP1-219ENST00000620786 CSB-PGBD3P0DP91 1061 aa14.73□□□□□ -0.05
CLIP1-219ENST00000620786 TDRD9Q8NDG6 1382 aaKnown RBP14.73□□□□□ -0.05
CLIP1-219ENST00000620786 GOLGA6L22H0YM25 854 aa14.73□□□□□ -0.05
CLIP1-219ENST00000620786 EIF5BO60841 1220 aaKnown RBP14.73□□□□□ -0.05
CLIP1-219ENST00000620786 HDGFL2Q7Z4V5 671 aaPredicted RBP14.73□□□□□ -0.05
CLIP1-219ENST00000620786 CHMP4BQ9H444 224 aaKnown RBP14.72□□□□□ -0.05
CLIP1-219ENST00000620786 EFCAB2Q5VUJ9 269 aa14.71□□□□□ -0.05
CLIP1-219ENST00000620786 RTF1Q92541 710 aaKnown RBP14.71□□□□□ -0.05
CLIP1-219ENST00000620786 CCDC9Q9Y3X0 531 aaKnown RBP14.71□□□□□ -0.06
CLIP1-219ENST00000620786 MS4A1P11836 297 aa14.69□□□□□ -0.06
CLIP1-219ENST00000620786 FGD1P98174 961 aa14.69□□□□□ -0.06
CLIP1-219ENST00000620786 PKD2Q13563 968 aa14.69□□□□□ -0.06
CLIP1-219ENST00000620786 CCDC88BA6NC98 1476 aa14.69□□□□□ -0.06
CLIP1-219ENST00000620786 NAP1L2Q9ULW6 460 aaPredicted RBP14.68□□□□□ -0.06
CLIP1-219ENST00000620786 KCNJ4P48050 445 aa14.67□□□□□ -0.06
CLIP1-219ENST00000620786 EID1Q9Y6B2 187 aa14.66□□□□□ -0.06
CLIP1-219ENST00000620786 ZNF330Q9Y3S2 320 aaPredicted RBP14.65□□□□□ -0.06
CLIP1-219ENST00000620786 ABCC8Q09428 1581 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 153.6 ms