RNA–Protein interactions for RNA: ENST00000617432.4

CUL3-216, Transcript of cullin 3, humanhuman

TSL 5 BASIC

Gene CUL3, Length 1,426 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-216ENST00000617432 SLC39A7Q92504 469 aa13.94□□□□□ -0.18
CUL3-216ENST00000617432 METRNQ9UJH8 293 aa13.94□□□□□ -0.18
CUL3-216ENST00000617432 MAMSTRQ6ZN01 415 aa13.91□□□□□ -0.18
CUL3-216ENST00000617432 MS4A3Q96HJ5 214 aa13.91□□□□□ -0.18
CUL3-216ENST00000617432 ATMINO43313 823 aaPredicted RBP13.9□□□□□ -0.18
CUL3-216ENST00000617432 POTEJP0CG39 1038 aa13.85□□□□□ -0.19
CUL3-216ENST00000617432 SCUBE2Q9NQ36 999 aa13.77□□□□□ -0.21
CUL3-216ENST00000617432 ATN1P54259 1190 aaPredicted RBP13.74□□□□□ -0.21
CUL3-216ENST00000617432 TSPYL2Q9H2G4 693 aaPredicted RBP13.74□□□□□ -0.21
CUL3-216ENST00000617432 LCE2DQ5TA82 110 aaPredicted RBP13.73□□□□□ -0.21
CUL3-216ENST00000617432 FAM163AQ96GL9 167 aaPredicted RBP13.73□□□□□ -0.21
CUL3-216ENST00000617432 CCDC61Q9Y6R9 512 aa13.72□□□□□ -0.21
CUL3-216ENST00000617432 KIF12Q96FN5 646 aa13.68□□□□□ -0.22
CUL3-216ENST00000617432 BMP2KQ9NSY1 1161 aaPredicted RBP13.64□□□□□ -0.23
CUL3-216ENST00000617432 POTEFA5A3E0 1075 aa13.63□□□□□ -0.23
CUL3-216ENST00000617432 TIE1P35590 1138 aa13.61□□□□□ -0.23
CUL3-216ENST00000617432 PROM2Q8N271 834 aa13.6□□□□□ -0.23
CUL3-216ENST00000617432 TRPC6Q9Y210 931 aa13.56□□□□□ -0.24
CUL3-216ENST00000617432 MAP3K13O43283 966 aa13.55□□□□□ -0.24
CUL3-216ENST00000617432 PLEKHG5O94827 1062 aa13.52□□□□□ -0.25
CUL3-216ENST00000617432 SEC24BO95487 1268 aa13.51□□□□□ -0.25
CUL3-216ENST00000617432 TTLL13PA6NNM8 815 aa13.48□□□□□ -0.25
CUL3-216ENST00000617432 EHMT2Q96KQ7 1210 aa13.48□□□□□ -0.25
CUL3-216ENST00000617432 COLQQ9Y215 455 aaPredicted RBP13.48□□□□□ -0.25
CUL3-216ENST00000617432 CDAN1Q8IWY9 1227 aa13.47□□□□□ -0.25
CUL3-216ENST00000617432 RASEFQ8IZ41 740 aa13.47□□□□□ -0.25
CUL3-216ENST00000617432 IER5LQ5T953 404 aa13.46□□□□□ -0.26
CUL3-216ENST00000617432 MIER1Q8N108 512 aa13.45□□□□□ -0.26
CUL3-216ENST00000617432 SGIP1Q9BQI5 828 aa13.43□□□□□ -0.26
CUL3-216ENST00000617432 TRIM35Q9UPQ4 493 aa13.39□□□□□ -0.27
CUL3-216ENST00000617432 PCDHB13Q9Y5F0 798 aa13.36□□□□□ -0.27
CUL3-216ENST00000617432 SLAIN1Q8ND83 568 aa13.34□□□□□ -0.27
CUL3-216ENST00000617432 ST18O60284 1047 aa13.32□□□□□ -0.28
CUL3-216ENST00000617432 PLCD3Q8N3E9 789 aa13.27□□□□□ -0.29
CUL3-216ENST00000617432 ZBTB47Q9UFB7 747 aaPredicted RBP13.26□□□□□ -0.29
CUL3-216ENST00000617432 PLCG2P16885 1265 aa13.25□□□□□ -0.29
CUL3-216ENST00000617432 IFNL1Q8IU54 200 aa13.25□□□□□ -0.29
CUL3-216ENST00000617432 TMEM106CQ9BVX2 250 aa13.24□□□□□ -0.29
CUL3-216ENST00000617432 NUBP1P53384 320 aa13.23□□□□□ -0.29
CUL3-216ENST00000617432 TMEM121BQ9BXQ6 578 aaPredicted RBP13.2□□□□□ -0.3
CUL3-216ENST00000617432 IRX5P78411 483 aaPredicted RBP13.19□□□□□ -0.3
CUL3-216ENST00000617432 SNPHO15079 494 aa13.16□□□□□ -0.3
CUL3-216ENST00000617432 FAM212AQ96EL1 285 aa13.16□□□□□ -0.3
CUL3-216ENST00000617432 MMRN1Q13201 1228 aa13.15□□□□□ -0.3
CUL3-216ENST00000617432 SPNS2Q8IVW8 549 aa13.14□□□□□ -0.31
CUL3-216ENST00000617432 OCEL1Q9H607 264 aa13.13□□□□□ -0.31
CUL3-216ENST00000617432 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.09□□□□□ -0.31
CUL3-216ENST00000617432 MARVELD3Q96A59 401 aa13.02□□□□□ -0.33
CUL3-216ENST00000617432 DCAF8Q5TAQ9 597 aa12.98□□□□□ -0.33
CUL3-216ENST00000617432 PYGBP11216 843 aa12.96□□□□□ -0.33
CUL3-216ENST00000617432 PCDHB8Q9UN66 801 aa12.94□□□□□ -0.34
CUL3-216ENST00000617432 EMP3P54852 163 aa12.91□□□□□ -0.34
CUL3-216ENST00000617432 C3orf67Q6ZVT6 689 aa12.9□□□□□ -0.34
CUL3-216ENST00000617432 L3MBTL3Q96JM7 780 aaPredicted RBP12.9□□□□□ -0.34
CUL3-216ENST00000617432 PDCD7Q8N8D1 485 aaKnown RBP12.89□□□□□ -0.35
CUL3-216ENST00000617432 MKRN3Q13064 507 aaKnown RBP12.85□□□□□ -0.35
CUL3-216ENST00000617432 GOLGA2Q08379 1002 aa12.84□□□□□ -0.35
CUL3-216ENST00000617432 HS3ST6Q96QI5 342 aa12.84□□□□□ -0.35
CUL3-216ENST00000617432 KRTAP3-3Q9BYR6 98 aa12.83□□□□□ -0.36
CUL3-216ENST00000617432 KRTAP3-2Q9BYR7 98 aa12.83□□□□□ -0.36
CUL3-216ENST00000617432 ZNF467Q7Z7K2 595 aaPredicted RBP12.82□□□□□ -0.36
CUL3-216ENST00000617432 POTEB3A0JP26 581 aa12.8□□□□□ -0.36
CUL3-216ENST00000617432 FAM205CA6NFA0 338 aa12.8□□□□□ -0.36
CUL3-216ENST00000617432 POTEBQ6S5H4 581 aa12.8□□□□□ -0.36
CUL3-216ENST00000617432 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.78□□□□□ -0.364e-7■■□□□ 13.3
CUL3-216ENST00000617432 GSE1Q14687 1217 aa12.76□□□□□ -0.37
CUL3-216ENST00000617432 FKBP8Q14318 412 aa12.73□□□□□ -0.37
CUL3-216ENST00000617432 CHRM1P11229 460 aaPredicted RBP12.72□□□□□ -0.37
CUL3-216ENST00000617432 FBXO3Q9UK99 471 aa12.71□□□□□ -0.37
CUL3-216ENST00000617432 PSEN1P49768 467 aa12.7□□□□□ -0.38
CUL3-216ENST00000617432 ILDR1Q86SU0 546 aaPredicted RBP12.7□□□□□ -0.38
CUL3-216ENST00000617432 HOXB3P14651 431 aaPredicted RBP12.63□□□□□ -0.39
CUL3-216ENST00000617432 KLHL34Q8N239 644 aa12.63□□□□□ -0.39
CUL3-216ENST00000617432 G3V3G9 751 aa12.62□□□□□ -0.39
CUL3-216ENST00000617432 HOXB1P14653 301 aaPredicted RBP12.62□□□□□ -0.39
CUL3-216ENST00000617432 DPY19L2Q6NUT2 758 aa12.62□□□□□ -0.39
CUL3-216ENST00000617432 PDAP1Q13442 181 aaKnown RBP12.61□□□□□ -0.39
CUL3-216ENST00000617432 BOLA1Q9Y3E2 137 aa12.61□□□□□ -0.39
CUL3-216ENST00000617432 ZNF710Q8N1W2 664 aa12.59□□□□□ -0.39
CUL3-216ENST00000617432 DOK7Q18PE1 504 aa12.56□□□□□ -0.4
CUL3-216ENST00000617432 ERBB3P21860 1342 aa12.56□□□□□ -0.4
CUL3-216ENST00000617432 RNF166Q96A37 237 aaPredicted RBP12.54□□□□□ -0.4
CUL3-216ENST00000617432 CABP2Q9NPB3 220 aa12.54□□□□□ -0.4
CUL3-216ENST00000617432 VASPP50552 380 aaPredicted RBP12.53□□□□□ -0.4
CUL3-216ENST00000617432 RIMBP2O15034 1052 aa12.49□□□□□ -0.41
CUL3-216ENST00000617432 MYT1LQ9UL68 1186 aa12.46□□□□□ -0.41
CUL3-216ENST00000617432 VARS2Q5ST30 1063 aaKnown RBP12.45□□□□□ -0.42
CUL3-216ENST00000617432 ZSWIM6Q9HCJ5 1215 aa12.42□□□□□ -0.42
CUL3-216ENST00000617432 ZNF687Q8N1G0 1237 aa12.41□□□□□ -0.42
CUL3-216ENST00000617432 PTGER2P43116 358 aa12.38□□□□□ -0.43
CUL3-216ENST00000617432 CIZ1Q9ULV3 898 aaPredicted RBP12.37□□□□□ -0.43
CUL3-216ENST00000617432 SPOCK2Q92563 424 aa12.36□□□□□ -0.43
CUL3-216ENST00000617432 GPR153Q6NV75 609 aa12.32□□□□□ -0.44
CUL3-216ENST00000617432 EFCAB3Q8N7B9 438 aa12.32□□□□□ -0.44
CUL3-216ENST00000617432 MICALL2Q8IY33 904 aa12.3□□□□□ -0.44
CUL3-216ENST00000617432 TMEM92Q6UXU6 159 aa12.29□□□□□ -0.44
CUL3-216ENST00000617432 ANKRD13DQ6ZTN6 518 aa12.24□□□□□ -0.45
CUL3-216ENST00000617432 IFNLR1Q8IU57 520 aaPredicted RBP12.24□□□□□ -0.45
CUL3-216ENST00000617432 TRIM41Q8WV44 630 aa12.23□□□□□ -0.45
CUL3-216ENST00000617432 SOX12O15370 315 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms