RNA–Protein interactions for RNA: ENST00000611829.4

LINC00635-223, long intergenic non-protein coding RNA 635, human

TSL 5

Gene LINC00635, Length 290 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00635-223	ENST00000611829	PLEKHG5	O94827	1062 aa		11.52	□□□□□ -0.57
LINC00635-223	ENST00000611829	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.51	□□□□□ -0.57
LINC00635-223	ENST00000611829	RB1CC1	Q8TDY2	1594 aa		11.5	□□□□□ -0.57
LINC00635-223	ENST00000611829	RNF25	Q96BH1	459 aa	Predicted RBP	11.47	□□□□□ -0.57
LINC00635-223	ENST00000611829	HS6ST3	Q8IZP7	471 aa		11.46	□□□□□ -0.57
LINC00635-223	ENST00000611829	TRIM41	Q8WV44	630 aa		11.43	□□□□□ -0.58
LINC00635-223	ENST00000611829	DNAJC5	Q9H3Z4	198 aa		11.41	□□□□□ -0.58
LINC00635-223	ENST00000611829	NUBP1	P53384	320 aa		11.39	□□□□□ -0.59
LINC00635-223	ENST00000611829	NKX1-1	Q15270	411 aa	Predicted RBP	11.39	□□□□□ -0.59
LINC00635-223	ENST00000611829	NBR1	Q14596	966 aa		11.38	□□□□□ -0.59
LINC00635-223	ENST00000611829	GSE1	Q14687	1217 aa		11.38	□□□□□ -0.59
LINC00635-223	ENST00000611829	DCAF8	Q5TAQ9	597 aa		11.38	□□□□□ -0.59
LINC00635-223	ENST00000611829	SCRIB	Q14160	1630 aa		11.34	□□□□□ -0.59
LINC00635-223	ENST00000611829	SUPT5H	O00267	1087 aa	Known RBP	11.33	□□□□□ -0.6
LINC00635-223	ENST00000611829	RIOK3	O14730	519 aa	Known RBP	11.33	□□□□□ -0.6
LINC00635-223	ENST00000611829	GTPBP6	O43824	516 aa	Predicted RBP	11.33	□□□□□ -0.6
LINC00635-223	ENST00000611829	STK25	O00506	426 aa		11.27	□□□□□ -0.61
LINC00635-223	ENST00000611829	CREBZF	Q9NS37	354 aa		11.25	□□□□□ -0.61
LINC00635-223	ENST00000611829	CLEC11A	Q9Y240	323 aa		11.23	□□□□□ -0.61
LINC00635-223	ENST00000611829	MNX1	P50219	401 aa	Predicted RBP	11.22	□□□□□ -0.61
LINC00635-223	ENST00000611829	CACNB1	Q02641	598 aa	Predicted RBP	11.22	□□□□□ -0.61
LINC00635-223	ENST00000611829	FAM212A	Q96EL1	285 aa		11.22	□□□□□ -0.61
LINC00635-223	ENST00000611829	VGF	O15240	615 aa	Predicted RBP	11.21	□□□□□ -0.61
LINC00635-223	ENST00000611829	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.21	□□□□□ -0.61
LINC00635-223	ENST00000611829	RASEF	Q8IZ41	740 aa		11.2	□□□□□ -0.62
LINC00635-223	ENST00000611829	STK24	Q9Y6E0	443 aa		11.19	□□□□□ -0.62
LINC00635-223	ENST00000611829	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.18	□□□□□ -0.62
LINC00635-223	ENST00000611829	PRR29	P0C7W0	189 aa		11.18	□□□□□ -0.62
LINC00635-223	ENST00000611829	ZFP91	Q96JP5	570 aa	Predicted RBP	11.18	□□□□□ -0.62
LINC00635-223	ENST00000611829	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.18	□□□□□ -0.62
LINC00635-223	ENST00000611829	CHRM1	P11229	460 aa	Predicted RBP	11.16	□□□□□ -0.62
LINC00635-223	ENST00000611829	PYGB	P11216	843 aa		11.15	□□□□□ -0.62
LINC00635-223	ENST00000611829	AKT1S1	Q96B36	256 aa		11.12	□□□□□ -0.63
LINC00635-223	ENST00000611829	SGIP1	Q9BQI5	828 aa		11.11	□□□□□ -0.63
LINC00635-223	ENST00000611829	RSF1	Q96T23	1441 aa	Predicted RBP	11.1	□□□□□ -0.63
LINC00635-223	ENST00000611829	REM2	Q8IYK8	340 aa	Predicted RBP	11.09	□□□□□ -0.63
LINC00635-223	ENST00000611829	TIMELESS	Q9UNS1	1208 aa		11.06	□□□□□ -0.64
LINC00635-223	ENST00000611829	TULP1	O00294	542 aa	Predicted RBP	11.05	□□□□□ -0.64
LINC00635-223	ENST00000611829	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.05	□□□□□ -0.64
LINC00635-223	ENST00000611829	RBM42	Q9BTD8	480 aa	Known RBP	11.04	□□□□□ -0.64
LINC00635-223	ENST00000611829	CECR2	Q9BXF3	1484 aa		11.02	□□□□□ -0.65
LINC00635-223	ENST00000611829	CADPS2	Q86UW7	1296 aa		11.02	□□□□□ -0.65
LINC00635-223	ENST00000611829	RYDEN	Q9NUL5	291 aa	Known RBP	11.02	□□□□□ -0.65
LINC00635-223	ENST00000611829	GTF3C3	Q9Y5Q9	886 aa		11.02	□□□□□ -0.65
LINC00635-223	ENST00000611829	BICRA	Q9NZM4	1560 aa		11	□□□□□ -0.65
LINC00635-223	ENST00000611829	UNC13A	Q9UPW8	1703 aa		10.98	□□□□□ -0.65
LINC00635-223	ENST00000611829	MROH2B	Q7Z745	1585 aa		10.96	□□□□□ -0.65
LINC00635-223	ENST00000611829	PITPNM1	O00562	1244 aa		10.96	□□□□□ -0.65
LINC00635-223	ENST00000611829	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.96	□□□□□ -0.65
LINC00635-223	ENST00000611829	KCNV2	Q8TDN2	545 aa		10.95	□□□□□ -0.66
LINC00635-223	ENST00000611829	WDR70	Q9NW82	654 aa		10.94	□□□□□ -0.66
LINC00635-223	ENST00000611829	CHADL	Q6NUI6	762 aa		10.93	□□□□□ -0.66
LINC00635-223	ENST00000611829	P3H3	Q8IVL6	736 aa		10.93	□□□□□ -0.66
LINC00635-223	ENST00000611829	PCDHB8	Q9UN66	801 aa		10.93	□□□□□ -0.66
LINC00635-223	ENST00000611829	PCDHB13	Q9Y5F0	798 aa		10.93	□□□□□ -0.66
LINC00635-223	ENST00000611829	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
LINC00635-223	ENST00000611829	SMARCA4	P51532	1647 aa		10.9	□□□□□ -0.66
LINC00635-223	ENST00000611829	LMOD2	Q6P5Q4	547 aa		10.89	□□□□□ -0.67
LINC00635-223	ENST00000611829	TMEM132A	Q24JP5	1023 aa		10.88	□□□□□ -0.67
LINC00635-223	ENST00000611829	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.88	□□□□□ -0.67
LINC00635-223	ENST00000611829	PDAP1	Q13442	181 aa	Known RBP	10.87	□□□□□ -0.67
LINC00635-223	ENST00000611829	MFRP	Q9BY79	579 aa		10.86	□□□□□ -0.67
LINC00635-223	ENST00000611829	SMARCA2	P51531	1590 aa		10.83	□□□□□ -0.68
LINC00635-223	ENST00000611829	PPP1R37	O75864	691 aa		10.83	□□□□□ -0.68
LINC00635-223	ENST00000611829	PSEN1	P49768	467 aa		10.83	□□□□□ -0.68
LINC00635-223	ENST00000611829	TOP2A	P11388	1531 aa	Known RBP	10.81	□□□□□ -0.68
LINC00635-223	ENST00000611829	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.81	□□□□□ -0.68
LINC00635-223	ENST00000611829	WIZ	O95785	1651 aa		10.81	□□□□□ -0.68
LINC00635-223	ENST00000611829	PEG3	Q9GZU2	1588 aa		10.81	□□□□□ -0.68
LINC00635-223	ENST00000611829	ATAD2B	Q9ULI0	1458 aa		10.8	□□□□□ -0.68
LINC00635-223	ENST00000611829	CCDC61	Q9Y6R9	512 aa		10.78	□□□□□ -0.68
LINC00635-223	ENST00000611829	BAZ1B	Q9UIG0	1483 aa	Known RBP	10.76	□□□□□ -0.69
LINC00635-223	ENST00000611829	NCAPD3	P42695	1498 aa		10.75	□□□□□ -0.69
LINC00635-223	ENST00000611829	EFCAB3	Q8N7B9	438 aa		10.75	□□□□□ -0.69
LINC00635-223	ENST00000611829	ZNF579	Q8NAF0	562 aa	Known RBP	10.75	□□□□□ -0.69
LINC00635-223	ENST00000611829	EIF4G1	Q04637	1599 aa	Known RBP	10.74	□□□□□ -0.69
LINC00635-223	ENST00000611829	BRPF1	P55201	1214 aa	Predicted RBP	10.74	□□□□□ -0.69
LINC00635-223	ENST00000611829	SEMA3E	O15041	775 aa		10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	IFNL1	Q8IU54	200 aa		10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	FBXO22	Q8NEZ5	403 aa		10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	ZC3H15	Q8WU90	426 aa	Known RBP	10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	ARHGEF1	Q92888	912 aa	Known RBP	10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	PHF8	Q9UPP1	1060 aa		10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	CCDC88B	A6NC98	1476 aa		10.73	□□□□□ -0.69
LINC00635-223	ENST00000611829	E2F4	Q16254	413 aa		10.72	□□□□□ -0.69
LINC00635-223	ENST00000611829	C14orf37	Q86TY3	774 aa		10.71	□□□□□ -0.69
LINC00635-223	ENST00000611829	CABP2	Q9NPB3	220 aa		10.71	□□□□□ -0.69
LINC00635-223	ENST00000611829	PRKAR2A	P13861	404 aa	Known RBP	10.69	□□□□□ -0.7
LINC00635-223	ENST00000611829	NLRP6	P59044	892 aa		10.69	□□□□□ -0.7
LINC00635-223	ENST00000611829	MAP3K13	O43283	966 aa		10.68	□□□□□ -0.7
LINC00635-223	ENST00000611829	ERICH6	Q7L0X2	663 aa		10.68	□□□□□ -0.7
LINC00635-223	ENST00000611829	SLC24A3	Q9HC58	644 aa		10.68	□□□□□ -0.7
LINC00635-223	ENST00000611829	TESPA1	A2RU30	521 aa	Predicted RBP	10.67	□□□□□ -0.7
LINC00635-223	ENST00000611829	HMGXB3	Q12766	1538 aa		10.67	□□□□□ -0.7
LINC00635-223	ENST00000611829	NEUROD2	Q15784	382 aa		10.65	□□□□□ -0.7
LINC00635-223	ENST00000611829	NCKAP5L	Q9HCH0	1330 aa		10.64	□□□□□ -0.71
LINC00635-223	ENST00000611829	SOX12	O15370	315 aa		10.64	□□□□□ -0.71
LINC00635-223	ENST00000611829	KIF12	Q96FN5	646 aa		10.63	□□□□□ -0.71
LINC00635-223	ENST00000611829	LARP6	Q9BRS8	491 aa	Known RBP	10.63	□□□□□ -0.71
LINC00635-223	ENST00000611829	MS4A4A	Q96JQ5	239 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms