RNA–Protein interactions for RNA: ENST00000608535.1

SMIM8-208, Transcript of small integral membrane protein 8, human

Gene SMIM8, Length 3,915 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMIM8-208	ENST00000608535	RBM25	P49756	843 aa	Known RBP	13.71	□□□□□ -0.21
SMIM8-208	ENST00000608535	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.71	□□□□□ -0.21
SMIM8-208	ENST00000608535	RAD21	O60216	631 aa		13.71	□□□□□ -0.21
SMIM8-208	ENST00000608535	BRPF3	Q9ULD4	1205 aa		13.71	□□□□□ -0.21
SMIM8-208	ENST00000608535	ZFP91	Q96JP5	570 aa	Predicted RBP	13.67	□□□□□ -0.22
SMIM8-208	ENST00000608535	KCTD17	Q8N5Z5	321 aa		13.65	□□□□□ -0.22
SMIM8-208	ENST00000608535	CLSPN	Q9HAW4	1339 aa		13.64	□□□□□ -0.23
SMIM8-208	ENST00000608535	ARID3C	A6NKF2	412 aa		13.64	□□□□□ -0.23
SMIM8-208	ENST00000608535	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.64	□□□□□ -0.23
SMIM8-208	ENST00000608535	PPM1G	O15355	546 aa	Predicted RBP	13.63	□□□□□ -0.23
SMIM8-208	ENST00000608535	CWC22	Q9HCG8	908 aa	Known RBP	13.62	□□□□□ -0.23
SMIM8-208	ENST00000608535	PSMD1	Q99460	953 aa		13.62	□□□□□ -0.23
SMIM8-208	ENST00000608535	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.6	□□□□□ -0.23
SMIM8-208	ENST00000608535	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.6	□□□□□ -0.23
SMIM8-208	ENST00000608535	PRDM10	Q9NQV6	1147 aa		13.6	□□□□□ -0.23
SMIM8-208	ENST00000608535	SCAF1	Q9H7N4	1312 aa	Known RBP	13.6	□□□□□ -0.23
SMIM8-208	ENST00000608535	RSPH4A	Q5TD94	716 aa		13.59	□□□□□ -0.23
SMIM8-208	ENST00000608535	AAMP	Q13685	434 aa		13.56	□□□□□ -0.24
SMIM8-208	ENST00000608535	ANP32E	Q9BTT0	268 aa		13.55	□□□□□ -0.24
SMIM8-208	ENST00000608535	CCDC180	Q9P1Z9	1646 aa		13.54	□□□□□ -0.24
SMIM8-208	ENST00000608535	NCL	P19338	710 aa	Known RBP	13.51	□□□□□ -0.25
SMIM8-208	ENST00000608535	TICAM2	Q86XR7	235 aa		13.51	□□□□□ -0.25
SMIM8-208	ENST00000608535	GLIPR1L2	Q4G1C9	344 aa		13.51	□□□□□ -0.25
SMIM8-208	ENST00000608535	AEBP1	Q8IUX7	1158 aa		13.5	□□□□□ -0.25
SMIM8-208	ENST00000608535	MTMR7	Q9Y216	660 aa		13.5	□□□□□ -0.25
SMIM8-208	ENST00000608535	TMED8	Q6PL24	325 aa	Predicted RBP	13.48	□□□□□ -0.25
SMIM8-208	ENST00000608535	CLSTN1	O94985	981 aa		13.48	□□□□□ -0.25
SMIM8-208	ENST00000608535	RBM10	P98175	930 aa	Known RBP	13.48	□□□□□ -0.25
SMIM8-208	ENST00000608535	ABCC9	O60706	1549 aa		13.46	□□□□□ -0.25
SMIM8-208	ENST00000608535	CERS3	Q8IU89	383 aa		13.45	□□□□□ -0.26
SMIM8-208	ENST00000608535	C1orf115	Q9H7X2	142 aa		13.45	□□□□□ -0.26
SMIM8-208	ENST00000608535	RSPH6A	Q9H0K4	717 aa		13.45	□□□□□ -0.26
SMIM8-208	ENST00000608535	NEUROD2	Q15784	382 aa		13.45	□□□□□ -0.26
SMIM8-208	ENST00000608535	DEK	P35659	375 aa	Known RBP	13.44	□□□□□ -0.26
SMIM8-208	ENST00000608535	FOXD4L1	Q9NU39	408 aa		13.43	□□□□□ -0.26
SMIM8-208	ENST00000608535	BRPF1	P55201	1214 aa	Predicted RBP	13.42	□□□□□ -0.26
SMIM8-208	ENST00000608535	MYT1L	Q9UL68	1186 aa		13.41	□□□□□ -0.26
SMIM8-208	ENST00000608535	CNPY4	Q8N129	248 aa		13.4	□□□□□ -0.26
SMIM8-208	ENST00000608535	NPM1	P06748	294 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
SMIM8-208	ENST00000608535	APBB1	O00213	710 aa		13.39	□□□□□ -0.27
SMIM8-208	ENST00000608535	SALL2	Q9Y467	1007 aa	Predicted RBP	13.39	□□□□□ -0.27
SMIM8-208	ENST00000608535	PTMS	P20962	102 aa		13.39	□□□□□ -0.27
SMIM8-208	ENST00000608535	FAM177A1	Q8N128	213 aa	Predicted RBP	13.39	□□□□□ -0.27
SMIM8-208	ENST00000608535	SPRYD3	Q8NCJ5	442 aa		13.38	□□□□□ -0.27
SMIM8-208	ENST00000608535	ZNF692	Q9BU19	519 aa	Predicted RBP	13.38	□□□□□ -0.27
SMIM8-208	ENST00000608535	ZMYND15	Q9H091	742 aa		13.37	□□□□□ -0.27
SMIM8-208	ENST00000608535	BBX	Q8WY36	941 aa	Predicted RBP	13.35	□□□□□ -0.27
SMIM8-208	ENST00000608535	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.35	□□□□□ -0.27
SMIM8-208	ENST00000608535	PLCD4	Q9BRC7	762 aa		13.33	□□□□□ -0.28
SMIM8-208	ENST00000608535	PPP4R3CP	Q6ZMV5	832 aa		13.32	□□□□□ -0.28
SMIM8-208	ENST00000608535	WWC1	Q8IX03	1113 aa		13.28	□□□□□ -0.28
SMIM8-208	ENST00000608535	KDM4A	O75164	1064 aa		13.28	□□□□□ -0.28
SMIM8-208	ENST00000608535	PKD2	Q13563	968 aa		13.25	□□□□□ -0.29
SMIM8-208	ENST00000608535	TMCO4	Q5TGY1	634 aa		13.25	□□□□□ -0.29
SMIM8-208	ENST00000608535	PRDM16	Q9HAZ2	1276 aa		13.24	□□□□□ -0.29
SMIM8-208	ENST00000608535	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.24	□□□□□ -0.29
SMIM8-208	ENST00000608535	OS9	Q13438	667 aa	Predicted RBP	13.19	□□□□□ -0.3
SMIM8-208	ENST00000608535	CCDC27	Q2M243	656 aa		13.19	□□□□□ -0.3
SMIM8-208	ENST00000608535		E9PSI1	815 aa		13.19	□□□□□ -0.3
SMIM8-208	ENST00000608535	MFAP1	P55081	439 aa	Known RBP	13.19	□□□□□ -0.3
SMIM8-208	ENST00000608535	RGS22	Q8NE09	1264 aa		13.17	□□□□□ -0.3
SMIM8-208	ENST00000608535	GZF1	Q9H116	711 aa	Predicted RBP	13.14	□□□□□ -0.31
SMIM8-208	ENST00000608535	FAM50A	Q14320	339 aa	Known RBP	13.13	□□□□□ -0.31
SMIM8-208	ENST00000608535	TEX2	Q8IWB9	1127 aa		13.13	□□□□□ -0.31
SMIM8-208	ENST00000608535	ERICH6B	Q5W0A0	696 aa		13.12	□□□□□ -0.31
SMIM8-208	ENST00000608535	FAM9B	Q8IZU0	186 aa		13.11	□□□□□ -0.31
SMIM8-208	ENST00000608535	PATL2	C9JE40	543 aa	Known RBP	13.11	□□□□□ -0.31
SMIM8-208	ENST00000608535	ANAPC15	P60006	121 aa		13.11	□□□□□ -0.31
SMIM8-208	ENST00000608535	CHMP4B	Q9H444	224 aa	Known RBP	13.09	□□□□□ -0.31
SMIM8-208	ENST00000608535	SECISBP2L	Q93073	1101 aa	Known RBP	13.08	□□□□□ -0.32
SMIM8-208	ENST00000608535	RTL5	Q5HYW3	569 aa	Predicted RBP	13.07	□□□□□ -0.32
SMIM8-208	ENST00000608535	CCDC82	Q8N4S0	544 aa		13.07	□□□□□ -0.32
SMIM8-208	ENST00000608535	CC2D2B	Q6DHV5	1058 aa		13.06	□□□□□ -0.32
SMIM8-208	ENST00000608535	GPATCH11	Q8N954	259 aa		13.05	□□□□□ -0.32
SMIM8-208	ENST00000608535	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.04	□□□□□ -0.32
SMIM8-208	ENST00000608535	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.03	□□□□□ -0.32
SMIM8-208	ENST00000608535	PTMA	P06454	111 aa	Known RBP	13.01	□□□□□ -0.33
SMIM8-208	ENST00000608535	FBXW7	Q969H0	707 aa		13.01	□□□□□ -0.33
SMIM8-208	ENST00000608535	ECM2	O94769	699 aa	Predicted RBP	12.99	□□□□□ -0.33
SMIM8-208	ENST00000608535	LMOD2	Q6P5Q4	547 aa		12.99	□□□□□ -0.33
SMIM8-208	ENST00000608535	YTHDC1	Q96MU7	727 aa	Known RBP	12.99	□□□□□ -0.33
SMIM8-208	ENST00000608535	NOL8	Q76FK4	1167 aa	Known RBP	12.98	□□□□□ -0.33
SMIM8-208	ENST00000608535	CHGA	P10645	457 aa	Known RBP	12.98	□□□□□ -0.33
SMIM8-208	ENST00000608535	SET	Q01105	290 aa	Predicted RBP	12.97	□□□□□ -0.33
SMIM8-208	ENST00000608535	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.97	□□□□□ -0.33
SMIM8-208	ENST00000608535	SMARCA5	O60264	1052 aa	Predicted RBP	12.95	□□□□□ -0.34
SMIM8-208	ENST00000608535	WDR70	Q9NW82	654 aa		12.94	□□□□□ -0.34
SMIM8-208	ENST00000608535	SLC24A3	Q9HC58	644 aa		12.93	□□□□□ -0.34
SMIM8-208	ENST00000608535	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	12.92	□□□□□ -0.34
SMIM8-208	ENST00000608535	FOXD4L3	Q6VB84	417 aa	Predicted RBP	12.92	□□□□□ -0.34
SMIM8-208	ENST00000608535	FAM193A	P78312	1265 aa		12.92	□□□□□ -0.34
SMIM8-208	ENST00000608535	IPO4	Q8TEX9	1081 aa	Known RBP	12.92	□□□□□ -0.34
SMIM8-208	ENST00000608535	IL27	Q8NEV9	243 aa		12.91	□□□□□ -0.34
SMIM8-208	ENST00000608535	VASP	P50552	380 aa	Predicted RBP	12.91	□□□□□ -0.34
SMIM8-208	ENST00000608535	NEFM	P07197	916 aa		12.89	□□□□□ -0.35
SMIM8-208	ENST00000608535	FTSJ3	Q8IY81	847 aa	Known RBP	12.89	□□□□□ -0.35
SMIM8-208	ENST00000608535	RB1CC1	Q8TDY2	1594 aa		12.89	□□□□□ -0.35
SMIM8-208	ENST00000608535	DNAJC2	Q99543	621 aa	Known RBP	12.89	□□□□□ -0.35
SMIM8-208	ENST00000608535	MCC	P23508	829 aa		12.86	□□□□□ -0.35
SMIM8-208	ENST00000608535	KCNG1	Q9UIX4	513 aa		12.86	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms