RNA–Protein interactions for RNA: ENST00000602723.5

CSMD1-217, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-217ENST00000602723 DNTTIP2Q5QJE6 756 aaKnown RBP12.62□□□□□ -0.39
CSMD1-217ENST00000602723 NAP1L5Q96NT1 182 aaPredicted RBP12.62□□□□□ -0.39
CSMD1-217ENST00000602723 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.61□□□□□ -0.39
CSMD1-217ENST00000602723 KDM2AQ9Y2K7 1162 aa12.59□□□□□ -0.39
CSMD1-217ENST00000602723 PLPPR3Q6T4P5 718 aa12.59□□□□□ -0.39
CSMD1-217ENST00000602723 CHIC2Q9UKJ5 165 aa12.59□□□□□ -0.39
CSMD1-217ENST00000602723 CASC1Q6TDU7 716 aa12.58□□□□□ -0.39
CSMD1-217ENST00000602723 PPM1GO15355 546 aaPredicted RBP12.54□□□□□ -0.4
CSMD1-217ENST00000602723 HIRIP3Q9BW71 556 aaPredicted RBP12.54□□□□□ -0.4
CSMD1-217ENST00000602723 RTN4Q9NQC3 1192 aaKnown RBP12.54□□□□□ -0.4
CSMD1-217ENST00000602723 FTSJ3Q8IY81 847 aaKnown RBP12.54□□□□□ -0.4
CSMD1-217ENST00000602723 LAS1LQ9Y4W2 734 aaKnown RBP12.54□□□□□ -0.4
CSMD1-217ENST00000602723 TPRNQ4KMQ1 711 aa12.53□□□□□ -0.4
CSMD1-217ENST00000602723 EIF4G2P78344 907 aaKnown RBP eCLIP12.53□□□□□ -0.4
CSMD1-217ENST00000602723 MTUS2Q5JR59 1369 aa12.53□□□□□ -0.4
CSMD1-217ENST00000602723 A0A0G2JS52 829 aa12.52□□□□□ -0.41
CSMD1-217ENST00000602723 NOP58Q9Y2X3 529 aaKnown RBP12.51□□□□□ -0.41
CSMD1-217ENST00000602723 CLIP1P30622 1438 aa12.5□□□□□ -0.41
CSMD1-217ENST00000602723 GOLGA6L6A8MZA4 724 aa12.49□□□□□ -0.41
CSMD1-217ENST00000602723 SUPT16HQ9Y5B9 1047 aaKnown RBP12.47□□□□□ -0.41
CSMD1-217ENST00000602723 TSPY4P0CV99 314 aa12.46□□□□□ -0.41
CSMD1-217ENST00000602723 TSPY10P0CW01 314 aa12.46□□□□□ -0.41
CSMD1-217ENST00000602723 CHAF1AQ13111 956 aaPredicted RBP12.46□□□□□ -0.42
CSMD1-217ENST00000602723 CFAP53Q96M91 514 aa12.45□□□□□ -0.42
CSMD1-217ENST00000602723 C14orf37Q86TY3 774 aa12.44□□□□□ -0.42
CSMD1-217ENST00000602723 NPM1P06748 294 aaKnown RBP eCLIP12.44□□□□□ -0.42
CSMD1-217ENST00000602723 NRDCO43847 1150 aa12.44□□□□□ -0.42
CSMD1-217ENST00000602723 HSP90AB1P08238 724 aaKnown RBP12.43□□□□□ -0.42
CSMD1-217ENST00000602723 ZBTB7CA1YPR0 619 aa12.43□□□□□ -0.42
CSMD1-217ENST00000602723 RGS3P49796 1198 aa12.43□□□□□ -0.42
CSMD1-217ENST00000602723 KNSTRNQ9Y448 316 aa12.43□□□□□ -0.42
CSMD1-217ENST00000602723 PPP4R2Q9NY27 417 aa12.42□□□□□ -0.42
CSMD1-217ENST00000602723 SENP3-EIF4A1A0A087X0R7 540 aa12.42□□□□□ -0.42
CSMD1-217ENST00000602723 PLCB2Q00722 1185 aa12.42□□□□□ -0.42
CSMD1-217ENST00000602723 TULP1O00294 542 aaPredicted RBP12.42□□□□□ -0.42
CSMD1-217ENST00000602723 RRP7BPQ9NSQ0 103 aa12.41□□□□□ -0.42
CSMD1-217ENST00000602723 PPP1R15AO75807 674 aaPredicted RBP12.4□□□□□ -0.42
CSMD1-217ENST00000602723 SENP3Q9H4L4 574 aaPredicted RBP12.4□□□□□ -0.42
CSMD1-217ENST00000602723 PLEKHG5O94827 1062 aa12.39□□□□□ -0.43
CSMD1-217ENST00000602723 CDCA8Q53HL2 280 aa12.39□□□□□ -0.43
CSMD1-217ENST00000602723 ZCCHC6Q5VYS8 1495 aaKnown RBP12.38□□□□□ -0.43
CSMD1-217ENST00000602723 RSF1Q96T23 1441 aaPredicted RBP12.38□□□□□ -0.43
CSMD1-217ENST00000602723 FGD1P98174 961 aa12.38□□□□□ -0.43
CSMD1-217ENST00000602723 L1TD1Q5T7N2 865 aaKnown RBP12.38□□□□□ -0.43
CSMD1-217ENST00000602723 MSNP26038 577 aaKnown RBP12.38□□□□□ -0.43
CSMD1-217ENST00000602723 HSCBQ8IWL3 235 aa12.37□□□□□ -0.43
CSMD1-217ENST00000602723 DEKP35659 375 aaKnown RBP12.35□□□□□ -0.43
CSMD1-217ENST00000602723 CEP162Q5TB80 1403 aa12.35□□□□□ -0.43
CSMD1-217ENST00000602723 GOLGA3Q08378 1498 aa12.35□□□□□ -0.43
CSMD1-217ENST00000602723 CHMP4BQ9H444 224 aaKnown RBP12.35□□□□□ -0.43
CSMD1-217ENST00000602723 MAPK8IP3Q9UPT6 1336 aa12.35□□□□□ -0.43
CSMD1-217ENST00000602723 TAOK2Q9UL54 1235 aa12.35□□□□□ -0.43
CSMD1-217ENST00000602723 KCNJ4P48050 445 aa12.34□□□□□ -0.43
CSMD1-217ENST00000602723 GOLGA6L4A6NEF3 574 aa12.34□□□□□ -0.43
CSMD1-217ENST00000602723 MYO15BQ96JP2 1530 aa12.34□□□□□ -0.43
CSMD1-217ENST00000602723 FRAT1Q92837 279 aaPredicted RBP12.34□□□□□ -0.43
CSMD1-217ENST00000602723 OS9Q13438 667 aaPredicted RBP12.33□□□□□ -0.44
CSMD1-217ENST00000602723 NEUROD2Q15784 382 aa12.32□□□□□ -0.44
CSMD1-217ENST00000602723 DRC7Q8IY82 874 aa12.32□□□□□ -0.44
CSMD1-217ENST00000602723 NAP1L2Q9ULW6 460 aaPredicted RBP12.32□□□□□ -0.44
CSMD1-217ENST00000602723 AMER1Q5JTC6 1135 aaPredicted RBP12.32□□□□□ -0.44
CSMD1-217ENST00000602723 MS4A1P11836 297 aa12.31□□□□□ -0.44
CSMD1-217ENST00000602723 B4GALNT3Q6L9W6 998 aa12.31□□□□□ -0.44
CSMD1-217ENST00000602723 RGL3Q3MIN7 710 aa12.31□□□□□ -0.44
CSMD1-217ENST00000602723 ARID4BQ4LE39 1312 aaPredicted RBP12.3□□□□□ -0.44
CSMD1-217ENST00000602723 CARD11Q9BXL7 1154 aa12.29□□□□□ -0.44
CSMD1-217ENST00000602723 EEA1Q15075 1411 aa12.28□□□□□ -0.44
CSMD1-217ENST00000602723 NUDCQ9Y266 331 aa12.27□□□□□ -0.44
CSMD1-217ENST00000602723 MCCP23508 829 aa12.27□□□□□ -0.45
CSMD1-217ENST00000602723 SPRYD3Q8NCJ5 442 aa12.26□□□□□ -0.45
CSMD1-217ENST00000602723 HAP1P54257 671 aaPredicted RBP12.26□□□□□ -0.45
CSMD1-217ENST00000602723 CHMP7Q8WUX9 453 aaPredicted RBP12.25□□□□□ -0.45
CSMD1-217ENST00000602723 CC2D1BQ5T0F9 858 aaKnown RBP12.24□□□□□ -0.45
CSMD1-217ENST00000602723 GOLGA2Q08379 1002 aa12.24□□□□□ -0.45
CSMD1-217ENST00000602723 KIAA2012Q0VF49 1180 aa12.24□□□□□ -0.45
CSMD1-217ENST00000602723 NPHP1O15259 732 aa12.23□□□□□ -0.45
CSMD1-217ENST00000602723 ARID3AQ99856 593 aa12.23□□□□□ -0.45
CSMD1-217ENST00000602723 CLSTN1O94985 981 aa12.22□□□□□ -0.45
CSMD1-217ENST00000602723 GBP4Q96PP9 640 aa12.22□□□□□ -0.45
CSMD1-217ENST00000602723 PTMSP20962 102 aa12.22□□□□□ -0.45
CSMD1-217ENST00000602723 PNNQ9H307 717 aaKnown RBP12.22□□□□□ -0.45
CSMD1-217ENST00000602723 GNL2Q13823 731 aaKnown RBP12.21□□□□□ -0.45
CSMD1-217ENST00000602723 NOC3LQ8WTT2 800 aaKnown RBP12.2□□□□□ -0.46
CSMD1-217ENST00000602723 U2SURPO15042 1029 aaKnown RBP12.2□□□□□ -0.46
CSMD1-217ENST00000602723 RBM19Q9Y4C8 960 aaKnown RBP12.2□□□□□ -0.46
CSMD1-217ENST00000602723 KCNH8Q96L42 1107 aa12.2□□□□□ -0.46
CSMD1-217ENST00000602723 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.2□□□□□ -0.46
CSMD1-217ENST00000602723 POGKQ9P215 609 aa12.19□□□□□ -0.46
CSMD1-217ENST00000602723 KAT6BQ8WYB5 2073 aa12.19□□□□□ -0.46
CSMD1-217ENST00000602723 CEP164Q9UPV0 1460 aa12.19□□□□□ -0.46
CSMD1-217ENST00000602723 CFAP44Q96MT7 982 aa12.19□□□□□ -0.46
CSMD1-217ENST00000602723 PLEKHD1A6NEE1 506 aa12.19□□□□□ -0.46
CSMD1-217ENST00000602723 CFDP1Q9UEE9 299 aaPredicted RBP12.19□□□□□ -0.46
CSMD1-217ENST00000602723 GZF1Q9H116 711 aaPredicted RBP12.17□□□□□ -0.46
CSMD1-217ENST00000602723 KIAA1211Q6ZU35 1233 aa12.17□□□□□ -0.46
CSMD1-217ENST00000602723 SYAP1Q96A49 352 aaPredicted RBP12.16□□□□□ -0.46
CSMD1-217ENST00000602723 TNNT3P45378 269 aaPredicted RBP12.16□□□□□ -0.46
CSMD1-217ENST00000602723 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
CSMD1-217ENST00000602723 SLKQ9H2G2 1235 aaPredicted RBP12.14□□□□□ -0.47
CSMD1-217ENST00000602723 LMOD2Q6P5Q4 547 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 132.1 ms