RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 RGL2O15211 777 aa10.7□□□□□ -0.7
VRK3-222ENST00000601324 CHRM1P11229 460 aaPredicted RBP10.63□□□□□ -0.71
VRK3-222ENST00000601324 TSPYL2Q9H2G4 693 aaPredicted RBP10.61□□□□□ -0.71
VRK3-222ENST00000601324 RNF25Q96BH1 459 aaPredicted RBP10.6□□□□□ -0.71
VRK3-222ENST00000601324 PAK3O75914 559 aaPredicted RBP10.57□□□□□ -0.72
VRK3-222ENST00000601324 PYGBP11216 843 aa10.57□□□□□ -0.72
VRK3-222ENST00000601324 RIOK3O14730 519 aaKnown RBP10.56□□□□□ -0.72
VRK3-222ENST00000601324 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
VRK3-222ENST00000601324 TAOK2Q9UL54 1235 aa10.54□□□□□ -0.72
VRK3-222ENST00000601324 CCDC61Q9Y6R9 512 aa10.54□□□□□ -0.72
VRK3-222ENST00000601324 CHGAP10645 457 aaKnown RBP10.51□□□□□ -0.73
VRK3-222ENST00000601324 BBXQ8WY36 941 aaPredicted RBP10.51□□□□□ -0.73
VRK3-222ENST00000601324 VGFO15240 615 aaPredicted RBP10.5□□□□□ -0.73
VRK3-222ENST00000601324 CD44P16070 742 aaKnown RBP10.5□□□□□ -0.73
VRK3-222ENST00000601324 HS6ST3Q8IZP7 471 aa10.49□□□□□ -0.73
VRK3-222ENST00000601324 PLCB2Q00722 1185 aa10.48□□□□□ -0.73
VRK3-222ENST00000601324 ZNF467Q7Z7K2 595 aaPredicted RBP10.47□□□□□ -0.73
VRK3-222ENST00000601324 ZRANB1Q9UGI0 708 aa10.47□□□□□ -0.73
VRK3-222ENST00000601324 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.46□□□□□ -0.73
VRK3-222ENST00000601324 ABCC9O60706 1549 aa10.46□□□□□ -0.74
VRK3-222ENST00000601324 C19orf67A6NJJ6 358 aa10.45□□□□□ -0.74
VRK3-222ENST00000601324 SGIP1Q9BQI5 828 aa10.45□□□□□ -0.74
VRK3-222ENST00000601324 KIF12Q96FN5 646 aa10.43□□□□□ -0.74
VRK3-222ENST00000601324 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.42□□□□□ -0.74
VRK3-222ENST00000601324 STK25O00506 426 aa10.42□□□□□ -0.74
VRK3-222ENST00000601324 ZNF579Q8NAF0 562 aaKnown RBP10.42□□□□□ -0.74
VRK3-222ENST00000601324 ZFP91Q96JP5 570 aaPredicted RBP10.42□□□□□ -0.74
VRK3-222ENST00000601324 DNAJC5Q9H3Z4 198 aa10.42□□□□□ -0.74
VRK3-222ENST00000601324 PCDHB8Q9UN66 801 aa10.41□□□□□ -0.74
VRK3-222ENST00000601324 PCDHB13Q9Y5F0 798 aa10.41□□□□□ -0.74
VRK3-222ENST00000601324 MAP3K13O43283 966 aa10.4□□□□□ -0.74
VRK3-222ENST00000601324 PHF12Q96QT6 1004 aa10.39□□□□□ -0.75
VRK3-222ENST00000601324 PDAP1Q13442 181 aaKnown RBP10.38□□□□□ -0.75
VRK3-222ENST00000601324 IFNL1Q8IU54 200 aa10.37□□□□□ -0.75
VRK3-222ENST00000601324 BCL11BQ9C0K0 894 aaPredicted RBP10.37□□□□□ -0.75
VRK3-222ENST00000601324 STK24Q9Y6E0 443 aa10.37□□□□□ -0.75
VRK3-222ENST00000601324 PAXIP1Q6ZW49 1069 aaPredicted RBP10.36□□□□□ -0.75
VRK3-222ENST00000601324 PSEN1P49768 467 aa10.34□□□□□ -0.75
VRK3-222ENST00000601324 SPRYD3Q8NCJ5 442 aa10.34□□□□□ -0.75
VRK3-222ENST00000601324 CFAP44Q96MT7 982 aa10.34□□□□□ -0.75
VRK3-222ENST00000601324 HAX1O00165 279 aa10.33□□□□□ -0.76
VRK3-222ENST00000601324 HAP1P54257 671 aaPredicted RBP10.31□□□□□ -0.76
VRK3-222ENST00000601324 NKX1-1Q15270 411 aaPredicted RBP10.31□□□□□ -0.76
VRK3-222ENST00000601324 MS4A3Q96HJ5 214 aa10.28□□□□□ -0.76
VRK3-222ENST00000601324 EVX2Q03828 476 aa10.25□□□□□ -0.77
VRK3-222ENST00000601324 POTEHQ6S545 545 aa10.25□□□□□ -0.77
VRK3-222ENST00000601324 GTPBP6O43824 516 aaPredicted RBP10.24□□□□□ -0.77
VRK3-222ENST00000601324 CLCN6P51797 869 aa10.24□□□□□ -0.77
VRK3-222ENST00000601324 RYDENQ9NUL5 291 aaKnown RBP10.23□□□□□ -0.77
VRK3-222ENST00000601324 TMEM106CQ9BVX2 250 aa10.2□□□□□ -0.78
VRK3-222ENST00000601324 CABP2Q9NPB3 220 aa10.2□□□□□ -0.78
VRK3-222ENST00000601324 TRPC6Q9Y210 931 aa10.2□□□□□ -0.78
VRK3-222ENST00000601324 GALR2O43603 387 aaPredicted RBP10.19□□□□□ -0.78
VRK3-222ENST00000601324 TIE1P35590 1138 aa10.18□□□□□ -0.78
VRK3-222ENST00000601324 VSIG10Q8N0Z9 540 aa10.17□□□□□ -0.78
VRK3-222ENST00000601324 EFCAB3Q8N7B9 438 aa10.17□□□□□ -0.78
VRK3-222ENST00000601324 TSHZ2Q9NRE2 1034 aa10.17□□□□□ -0.78
VRK3-222ENST00000601324 MFRPQ9BY79 579 aa10.16□□□□□ -0.78
VRK3-222ENST00000601324 SOX12O15370 315 aa10.15□□□□□ -0.78
VRK3-222ENST00000601324 TTLL13PA6NNM8 815 aa10.14□□□□□ -0.79
VRK3-222ENST00000601324 BMP2KQ9NSY1 1161 aaPredicted RBP10.14□□□□□ -0.79
VRK3-222ENST00000601324 GOLGA2Q08379 1002 aa10.13□□□□□ -0.79
VRK3-222ENST00000601324 NLRP6P59044 892 aa10.11□□□□□ -0.79
VRK3-222ENST00000601324 FBXO22Q8NEZ5 403 aa10.1□□□□□ -0.79
VRK3-222ENST00000601324 GABBR2O75899 941 aa10.09□□□□□ -0.79
VRK3-222ENST00000601324 PHF8Q9UPP1 1060 aa10.09□□□□□ -0.79
VRK3-222ENST00000601324 KDM2AQ9Y2K7 1162 aa10.09□□□□□ -0.79
VRK3-222ENST00000601324 CCDC180Q9P1Z9 1646 aa10.08□□□□□ -0.8
VRK3-222ENST00000601324 MKRN3Q13064 507 aaKnown RBP10.08□□□□□ -0.8
VRK3-222ENST00000601324 TRIM35Q9UPQ4 493 aa10.07□□□□□ -0.8
VRK3-222ENST00000601324 ATMINO43313 823 aaPredicted RBP10.04□□□□□ -0.8
VRK3-222ENST00000601324 ASTLQ6HA08 431 aaPredicted RBP10.04□□□□□ -0.8
VRK3-222ENST00000601324 ATN1P54259 1190 aaPredicted RBP10.03□□□□□ -0.8
VRK3-222ENST00000601324 MS4A4AQ96JQ5 239 aa10.03□□□□□ -0.8
VRK3-222ENST00000601324 PPP1R37O75864 691 aa10.02□□□□□ -0.81
VRK3-222ENST00000601324 ILDR1Q86SU0 546 aaPredicted RBP10.01□□□□□ -0.81
VRK3-222ENST00000601324 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10□□□□□ -0.81
VRK3-222ENST00000601324 IER5LQ5T953 404 aa9.98□□□□□ -0.81
VRK3-222ENST00000601324 SP7Q8TDD2 431 aaPredicted RBP9.98□□□□□ -0.81
VRK3-222ENST00000601324 DCBLD2Q96PD2 775 aa9.98□□□□□ -0.81
VRK3-222ENST00000601324 CADPS2Q86UW7 1296 aa9.96□□□□□ -0.82
VRK3-222ENST00000601324 IRX5P78411 483 aaPredicted RBP9.94□□□□□ -0.82
VRK3-222ENST00000601324 OCEL1Q9H607 264 aa9.93□□□□□ -0.82
VRK3-222ENST00000601324 PDCD7Q8N8D1 485 aaKnown RBP9.92□□□□□ -0.82
VRK3-222ENST00000601324 PELP1Q8IZL8 1130 aaKnown RBP9.91□□□□□ -0.82
VRK3-222ENST00000601324 PLCG2P16885 1265 aa9.89□□□□□ -0.83
VRK3-222ENST00000601324 SLC39A7Q92504 469 aa9.89□□□□□ -0.83
VRK3-222ENST00000601324 POTEIP0CG38 1075 aa9.88□□□□□ -0.83
VRK3-222ENST00000601324 DPY19L2Q6NUT2 758 aa9.88□□□□□ -0.83
VRK3-222ENST00000601324 BCANQ96GW7 911 aa9.87□□□□□ -0.83
VRK3-222ENST00000601324 C7P10643 843 aa9.86□□□□□ -0.83
VRK3-222ENST00000601324 WDR70Q9NW82 654 aa9.86□□□□□ -0.83
VRK3-222ENST00000601324 SEC24BO95487 1268 aa9.85□□□□□ -0.83
VRK3-222ENST00000601324 MICALL2Q8IY33 904 aa9.84□□□□□ -0.83
VRK3-222ENST00000601324 NCKAP5LQ9HCH0 1330 aa9.83□□□□□ -0.84
VRK3-222ENST00000601324 CRISPLD2Q9H0B8 497 aa9.83□□□□□ -0.84
VRK3-222ENST00000601324 METRNQ9UJH8 293 aa9.83□□□□□ -0.84
VRK3-222ENST00000601324 COLQQ9Y215 455 aaPredicted RBP9.83□□□□□ -0.84
VRK3-222ENST00000601324 PDE4AP27815 886 aa9.82□□□□□ -0.84
VRK3-222ENST00000601324 BOLA1Q9Y3E2 137 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms