RNA–Protein interactions for RNA: ENST00000599179.1

LINC00343-207, long intergenic non-protein coding RNA 343, humanhuman

TSL 5

Gene LINC00343, Length 726 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-207ENST00000599179 CCDC61Q9Y6R9 512 aa17.01■□□□□ 0.31
LINC00343-207ENST00000599179 MS4A3Q96HJ5 214 aa16.99■□□□□ 0.31
LINC00343-207ENST00000599179 ASTLQ6HA08 431 aaPredicted RBP16.91■□□□□ 0.3
LINC00343-207ENST00000599179 RASEFQ8IZ41 740 aa16.91■□□□□ 0.3
LINC00343-207ENST00000599179 KIF12Q96FN5 646 aa16.9■□□□□ 0.3
LINC00343-207ENST00000599179 FBXO3Q9UK99 471 aa16.88■□□□□ 0.29
LINC00343-207ENST00000599179 ATMINO43313 823 aaPredicted RBP16.85■□□□□ 0.29
LINC00343-207ENST00000599179 SLC39A7Q92504 469 aa16.82■□□□□ 0.28
LINC00343-207ENST00000599179 PELP1Q8IZL8 1130 aaKnown RBP16.81■□□□□ 0.28
LINC00343-207ENST00000599179 C7P10643 843 aa16.8■□□□□ 0.28
LINC00343-207ENST00000599179 MAP3K13O43283 966 aa16.78■□□□□ 0.28
LINC00343-207ENST00000599179 NUBP1P53384 320 aa16.78■□□□□ 0.28
LINC00343-207ENST00000599179 METRNQ9UJH8 293 aa16.78■□□□□ 0.28
LINC00343-207ENST00000599179 FAM212AQ96EL1 285 aa16.77■□□□□ 0.28
LINC00343-207ENST00000599179 SGIP1Q9BQI5 828 aa16.76■□□□□ 0.27
LINC00343-207ENST00000599179 TIE1P35590 1138 aa16.73■□□□□ 0.27
LINC00343-207ENST00000599179 ATN1P54259 1190 aaPredicted RBP16.7■□□□□ 0.26
LINC00343-207ENST00000599179 POTEB2H3BUK9 544 aa16.69■□□□□ 0.26
LINC00343-207ENST00000599179 BMP2KQ9NSY1 1161 aaPredicted RBP16.69■□□□□ 0.26
LINC00343-207ENST00000599179 OTUD5Q96G74 571 aa16.68■□□□□ 0.26
LINC00343-207ENST00000599179 ABCC9O60706 1549 aa16.66■□□□□ 0.26
LINC00343-207ENST00000599179 PCDHB13Q9Y5F0 798 aa16.66■□□□□ 0.26
LINC00343-207ENST00000599179 TRPC6Q9Y210 931 aa16.63■□□□□ 0.25
LINC00343-207ENST00000599179 MAMSTRQ6ZN01 415 aa16.61■□□□□ 0.25
LINC00343-207ENST00000599179 TTLL13PA6NNM8 815 aa16.59■□□□□ 0.25
LINC00343-207ENST00000599179 VASPP50552 380 aaPredicted RBP16.58■□□□□ 0.24
LINC00343-207ENST00000599179 DCAF8Q5TAQ9 597 aa16.55■□□□□ 0.24
LINC00343-207ENST00000599179 IFNL1Q8IU54 200 aa16.53■□□□□ 0.24
LINC00343-207ENST00000599179 KLHL34Q8N239 644 aa16.52■□□□□ 0.24
LINC00343-207ENST00000599179 IER5LQ5T953 404 aa16.51■□□□□ 0.23
LINC00343-207ENST00000599179 SCUBE2Q9NQ36 999 aa16.5■□□□□ 0.23
LINC00343-207ENST00000599179 TRIM35Q9UPQ4 493 aa16.49■□□□□ 0.23
LINC00343-207ENST00000599179 SEC24BO95487 1268 aa16.48■□□□□ 0.23
LINC00343-207ENST00000599179 POTEJP0CG39 1038 aa16.46■□□□□ 0.23
LINC00343-207ENST00000599179 GSE1Q14687 1217 aa16.46■□□□□ 0.23
LINC00343-207ENST00000599179 TMEM106CQ9BVX2 250 aa16.44■□□□□ 0.22
LINC00343-207ENST00000599179 POTEFA5A3E0 1075 aa16.43■□□□□ 0.22
LINC00343-207ENST00000599179 PYGBP11216 843 aa16.43■□□□□ 0.22
LINC00343-207ENST00000599179 COLQQ9Y215 455 aaPredicted RBP16.37■□□□□ 0.21
LINC00343-207ENST00000599179 ZNF467Q7Z7K2 595 aaPredicted RBP16.32■□□□□ 0.2
LINC00343-207ENST00000599179 PLCG2P16885 1265 aa16.3■□□□□ 0.2
LINC00343-207ENST00000599179 CHRM1P11229 460 aaPredicted RBP16.29■□□□□ 0.2
LINC00343-207ENST00000599179 PCDHB8Q9UN66 801 aa16.29■□□□□ 0.2
LINC00343-207ENST00000599179 SPOCK2Q92563 424 aa16.27■□□□□ 0.2
LINC00343-207ENST00000599179 POTEMA6NI47 508 aa16.24■□□□□ 0.19
LINC00343-207ENST00000599179 IRX5P78411 483 aaPredicted RBP16.23■□□□□ 0.19
LINC00343-207ENST00000599179 IFNLR1Q8IU57 520 aaPredicted RBP16.23■□□□□ 0.19
LINC00343-207ENST00000599179 POTEGQ6S5H5 508 aa16.2■□□□□ 0.18
LINC00343-207ENST00000599179 OCEL1Q9H607 264 aa16.2■□□□□ 0.18
LINC00343-207ENST00000599179 GOLGA2Q08379 1002 aa16.15■□□□□ 0.18
LINC00343-207ENST00000599179 CIZ1Q9ULV3 898 aaPredicted RBP16.14■□□□□ 0.17
LINC00343-207ENST00000599179 FAM163AQ96GL9 167 aaPredicted RBP16.13■□□□□ 0.17
LINC00343-207ENST00000599179 PCDH10Q9P2E7 1040 aa16.12■□□□□ 0.17
LINC00343-207ENST00000599179 MKRN3Q13064 507 aaKnown RBP16.1■□□□□ 0.17
LINC00343-207ENST00000599179 PSEN1P49768 467 aa16.09■□□□□ 0.17
LINC00343-207ENST00000599179 SLAIN1Q8ND83 568 aa16.09■□□□□ 0.17
LINC00343-207ENST00000599179 PDAP1Q13442 181 aaKnown RBP16.07■□□□□ 0.16
LINC00343-207ENST00000599179 LCE2DQ5TA82 110 aaPredicted RBP16.06■□□□□ 0.16
LINC00343-207ENST00000599179 PLSCR2Q9NRY7 297 aa16.06■□□□□ 0.16
LINC00343-207ENST00000599179 TRIM41Q8WV44 630 aa16.05■□□□□ 0.16
LINC00343-207ENST00000599179 EIF2AK3Q9NZJ5 1116 aaKnown RBP16■□□□□ 0.15
LINC00343-207ENST00000599179 PDCD7Q8N8D1 485 aaKnown RBP15.99■□□□□ 0.15
LINC00343-207ENST00000599179 L3MBTL3Q96JM7 780 aaPredicted RBP15.97■□□□□ 0.15
LINC00343-207ENST00000599179 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.97■□□□□ 0.15
LINC00343-207ENST00000599179 CCDC180Q9P1Z9 1646 aa15.97■□□□□ 0.15
LINC00343-207ENST00000599179 C3orf67Q6ZVT6 689 aa15.92■□□□□ 0.14
LINC00343-207ENST00000599179 SNPHO15079 494 aa15.91■□□□□ 0.14
LINC00343-207ENST00000599179 CABP2Q9NPB3 220 aa15.89■□□□□ 0.13
LINC00343-207ENST00000599179 ILDR1Q86SU0 546 aaPredicted RBP15.88■□□□□ 0.13
LINC00343-207ENST00000599179 ST18O60284 1047 aa15.85■□□□□ 0.13
LINC00343-207ENST00000599179 TMEM121BQ9BXQ6 578 aaPredicted RBP15.83■□□□□ 0.12
LINC00343-207ENST00000599179 G3V3G9 751 aa15.8■□□□□ 0.12
LINC00343-207ENST00000599179 RIOK3O14730 519 aaKnown RBP15.75■□□□□ 0.11
LINC00343-207ENST00000599179 CDAN1Q8IWY9 1227 aa15.73■□□□□ 0.11
LINC00343-207ENST00000599179 BOLA1Q9Y3E2 137 aa15.73■□□□□ 0.11
LINC00343-207ENST00000599179 DPY19L2Q6NUT2 758 aa15.7■□□□□ 0.1
LINC00343-207ENST00000599179 VGFO15240 615 aaPredicted RBP15.69■□□□□ 0.1
LINC00343-207ENST00000599179 EFCAB3Q8N7B9 438 aa15.68■□□□□ 0.1
LINC00343-207ENST00000599179 TAOK2Q9UL54 1235 aa15.66■□□□□ 0.1
LINC00343-207ENST00000599179 RNF25Q96BH1 459 aaPredicted RBP15.65■□□□□ 0.1
LINC00343-207ENST00000599179 SOX12O15370 315 aa15.63■□□□□ 0.09
LINC00343-207ENST00000599179 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.62■□□□□ 0.09
LINC00343-207ENST00000599179 ZFP91Q96JP5 570 aaPredicted RBP15.62■□□□□ 0.09
LINC00343-207ENST00000599179 MARVELD3Q96A59 401 aa15.57■□□□□ 0.08
LINC00343-207ENST00000599179 EMP3P54852 163 aa15.55■□□□□ 0.08
LINC00343-207ENST00000599179 RB1CC1Q8TDY2 1594 aa15.53■□□□□ 0.08
LINC00343-207ENST00000599179 MICALL2Q8IY33 904 aa15.5■□□□□ 0.07
LINC00343-207ENST00000599179 DOK7Q18PE1 504 aa15.48■□□□□ 0.07
LINC00343-207ENST00000599179 ZNF710Q8N1W2 664 aa15.46■□□□□ 0.07
LINC00343-207ENST00000599179 PHF8Q9UPP1 1060 aa15.46■□□□□ 0.07
LINC00343-207ENST00000599179 ECM2O94769 699 aaPredicted RBP15.45■□□□□ 0.06
LINC00343-207ENST00000599179 HOXB3P14651 431 aaPredicted RBP15.45■□□□□ 0.06
LINC00343-207ENST00000599179 BCL11BQ9C0K0 894 aaPredicted RBP15.45■□□□□ 0.06
LINC00343-207ENST00000599179 RIMBP2O15034 1052 aa15.44■□□□□ 0.06
LINC00343-207ENST00000599179 NLRP6P59044 892 aa15.44■□□□□ 0.06
LINC00343-207ENST00000599179 MS4A4AQ96JQ5 239 aa15.44■□□□□ 0.06
LINC00343-207ENST00000599179 STK24Q9Y6E0 443 aa15.41■□□□□ 0.06
LINC00343-207ENST00000599179 HS3ST6Q96QI5 342 aa15.4■□□□□ 0.06
LINC00343-207ENST00000599179 FAM205CA6NFA0 338 aa15.39■□□□□ 0.05
LINC00343-207ENST00000599179 HOXB1P14653 301 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms