RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 GABBR2O75899 941 aa13.2□□□□□ -0.3
SMAD4-216ENST00000593223 TSPYL2Q9H2G4 693 aaPredicted RBP13.2□□□□□ -0.3
SMAD4-216ENST00000593223 PKD2Q13563 968 aa13.19□□□□□ -0.3
SMAD4-216ENST00000593223 PAK3O75914 559 aaPredicted RBP13.18□□□□□ -0.3
SMAD4-216ENST00000593223 ECM2O94769 699 aaPredicted RBP13.18□□□□□ -0.3
SMAD4-216ENST00000593223 CD44P16070 742 aaKnown RBP13.12□□□□□ -0.31
SMAD4-216ENST00000593223 LHX8Q68G74 356 aa13.12□□□□□ -0.31
SMAD4-216ENST00000593223 TRIM41Q8WV44 630 aa13.12□□□□□ -0.31
SMAD4-216ENST00000593223 ZRANB1Q9UGI0 708 aa13.08□□□□□ -0.32
SMAD4-216ENST00000593223 DCAF8L2P0C7V8 631 aa13.07□□□□□ -0.32
SMAD4-216ENST00000593223 PYGBP11216 843 aa13.05□□□□□ -0.32
SMAD4-216ENST00000593223 CCDC61Q9Y6R9 512 aa13.01□□□□□ -0.33
SMAD4-216ENST00000593223 RGL2O15211 777 aa12.99□□□□□ -0.33
SMAD4-216ENST00000593223 POTEIP0CG38 1075 aa12.98□□□□□ -0.33
SMAD4-216ENST00000593223 CHRM1P11229 460 aaPredicted RBP12.98□□□□□ -0.33
SMAD4-216ENST00000593223 PHF12Q96QT6 1004 aa12.93□□□□□ -0.34
SMAD4-216ENST00000593223 RIOK3O14730 519 aaKnown RBP12.91□□□□□ -0.34
SMAD4-216ENST00000593223 ZNF579Q8NAF0 562 aaKnown RBP12.91□□□□□ -0.34
SMAD4-216ENST00000593223 RNF25Q96BH1 459 aaPredicted RBP12.89□□□□□ -0.35
SMAD4-216ENST00000593223 KIF12Q96FN5 646 aa12.89□□□□□ -0.35
SMAD4-216ENST00000593223 TAOK2Q9UL54 1235 aa12.89□□□□□ -0.35
SMAD4-216ENST00000593223 PCDHB13Q9Y5F0 798 aa12.89□□□□□ -0.35
SMAD4-216ENST00000593223 MAP3K13O43283 966 aa12.88□□□□□ -0.35
SMAD4-216ENST00000593223 ZNF467Q7Z7K2 595 aaPredicted RBP12.88□□□□□ -0.35
SMAD4-216ENST00000593223 PCDHB8Q9UN66 801 aa12.85□□□□□ -0.35
SMAD4-216ENST00000593223 SGIP1Q9BQI5 828 aa12.84□□□□□ -0.35
SMAD4-216ENST00000593223 VGFO15240 615 aaPredicted RBP12.83□□□□□ -0.36
SMAD4-216ENST00000593223 IFNL1Q8IU54 200 aa12.81□□□□□ -0.36
SMAD4-216ENST00000593223 CHGAP10645 457 aaKnown RBP12.8□□□□□ -0.36
SMAD4-216ENST00000593223 PDAP1Q13442 181 aaKnown RBP12.77□□□□□ -0.37
SMAD4-216ENST00000593223 MS4A3Q96HJ5 214 aa12.77□□□□□ -0.37
SMAD4-216ENST00000593223 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.75□□□□□ -0.37
SMAD4-216ENST00000593223 STK25O00506 426 aa12.75□□□□□ -0.37
SMAD4-216ENST00000593223 CLCN6P51797 869 aa12.75□□□□□ -0.37
SMAD4-216ENST00000593223 ZFP91Q96JP5 570 aaPredicted RBP12.75□□□□□ -0.37
SMAD4-216ENST00000593223 PSEN1P49768 467 aa12.74□□□□□ -0.37
SMAD4-216ENST00000593223 GALR2O43603 387 aaPredicted RBP12.71□□□□□ -0.37
SMAD4-216ENST00000593223 STK24Q9Y6E0 443 aa12.71□□□□□ -0.37
SMAD4-216ENST00000593223 HS6ST3Q8IZP7 471 aa12.7□□□□□ -0.38
SMAD4-216ENST00000593223 BCL11BQ9C0K0 894 aaPredicted RBP12.7□□□□□ -0.38
SMAD4-216ENST00000593223 DCBLD2Q96PD2 775 aa12.68□□□□□ -0.38
SMAD4-216ENST00000593223 PLSCR2Q9NRY7 297 aa12.66□□□□□ -0.38
SMAD4-216ENST00000593223 TRPC6Q9Y210 931 aa12.66□□□□□ -0.38
SMAD4-216ENST00000593223 BBXQ8WY36 941 aaPredicted RBP12.65□□□□□ -0.38
SMAD4-216ENST00000593223 TMEM106CQ9BVX2 250 aa12.65□□□□□ -0.38
SMAD4-216ENST00000593223 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.65□□□□□ -0.38
SMAD4-216ENST00000593223 TIE1P35590 1138 aa12.61□□□□□ -0.39
SMAD4-216ENST00000593223 GOLGA2Q08379 1002 aa12.6□□□□□ -0.39
SMAD4-216ENST00000593223 CABP2Q9NPB3 220 aa12.59□□□□□ -0.39
SMAD4-216ENST00000593223 TTLL13PA6NNM8 815 aa12.57□□□□□ -0.4
SMAD4-216ENST00000593223 BMP2KQ9NSY1 1161 aaPredicted RBP12.57□□□□□ -0.4
SMAD4-216ENST00000593223 OTUD5Q96G74 571 aa12.55□□□□□ -0.4
SMAD4-216ENST00000593223 POTEB2H3BUK9 544 aa12.54□□□□□ -0.4
SMAD4-216ENST00000593223 PAXIP1Q6ZW49 1069 aaPredicted RBP12.53□□□□□ -0.4
SMAD4-216ENST00000593223 DNAJC5Q9H3Z4 198 aa12.53□□□□□ -0.4
SMAD4-216ENST00000593223 CFAP44Q96MT7 982 aa12.52□□□□□ -0.41
SMAD4-216ENST00000593223 MKRN3Q13064 507 aaKnown RBP12.51□□□□□ -0.41
SMAD4-216ENST00000593223 EFCAB3Q8N7B9 438 aa12.51□□□□□ -0.41
SMAD4-216ENST00000593223 TRIM35Q9UPQ4 493 aa12.51□□□□□ -0.41
SMAD4-216ENST00000593223 NKX1-1Q15270 411 aaPredicted RBP12.5□□□□□ -0.41
SMAD4-216ENST00000593223 SPRYD3Q8NCJ5 442 aa12.5□□□□□ -0.41
SMAD4-216ENST00000593223 ATMINO43313 823 aaPredicted RBP12.49□□□□□ -0.41
SMAD4-216ENST00000593223 ATN1P54259 1190 aaPredicted RBP12.49□□□□□ -0.41
SMAD4-216ENST00000593223 PLCB2Q00722 1185 aa12.48□□□□□ -0.41
SMAD4-216ENST00000593223 ASTLQ6HA08 431 aaPredicted RBP12.48□□□□□ -0.41
SMAD4-216ENST00000593223 RYDENQ9NUL5 291 aaKnown RBP12.46□□□□□ -0.41
SMAD4-216ENST00000593223 SOX12O15370 315 aa12.45□□□□□ -0.42
SMAD4-216ENST00000593223 PELP1Q8IZL8 1130 aaKnown RBP12.43□□□□□ -0.42
SMAD4-216ENST00000593223 NLRP6P59044 892 aa12.42□□□□□ -0.42
SMAD4-216ENST00000593223 PHF8Q9UPP1 1060 aa12.42□□□□□ -0.42
SMAD4-216ENST00000593223 MFRPQ9BY79 579 aa12.41□□□□□ -0.42
SMAD4-216ENST00000593223 GTPBP6O43824 516 aaPredicted RBP12.4□□□□□ -0.42
SMAD4-216ENST00000593223 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.39□□□□□ -0.436e-8■□□□□ 8.4
SMAD4-216ENST00000593223 POTEMA6NI47 508 aa12.37□□□□□ -0.43
SMAD4-216ENST00000593223 HAP1P54257 671 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-216ENST00000593223 IER5LQ5T953 404 aa12.35□□□□□ -0.43
SMAD4-216ENST00000593223 FBXO22Q8NEZ5 403 aa12.34□□□□□ -0.43
SMAD4-216ENST00000593223 SLC39A7Q92504 469 aa12.34□□□□□ -0.43
SMAD4-216ENST00000593223 SLC24A1O60721 1099 aa12.33□□□□□ -0.44
SMAD4-216ENST00000593223 SEC24BO95487 1268 aa12.33□□□□□ -0.44
SMAD4-216ENST00000593223 POTEGQ6S5H5 508 aa12.33□□□□□ -0.44
SMAD4-216ENST00000593223 PLCG2P16885 1265 aa12.32□□□□□ -0.44
SMAD4-216ENST00000593223 POTEJP0CG39 1038 aa12.3□□□□□ -0.44
SMAD4-216ENST00000593223 C7P10643 843 aa12.3□□□□□ -0.44
SMAD4-216ENST00000593223 OCEL1Q9H607 264 aa12.3□□□□□ -0.44
SMAD4-216ENST00000593223 IRX5P78411 483 aaPredicted RBP12.29□□□□□ -0.44
SMAD4-216ENST00000593223 METRNQ9UJH8 293 aa12.29□□□□□ -0.44
SMAD4-216ENST00000593223 MS4A4AQ96JQ5 239 aa12.28□□□□□ -0.44
SMAD4-216ENST00000593223 PPP1R37O75864 691 aa12.25□□□□□ -0.45
SMAD4-216ENST00000593223 ILDR1Q86SU0 546 aaPredicted RBP12.25□□□□□ -0.45
SMAD4-216ENST00000593223 PDCD7Q8N8D1 485 aaKnown RBP12.24□□□□□ -0.45
SMAD4-216ENST00000593223 TSHZ2Q9NRE2 1034 aa12.24□□□□□ -0.45
SMAD4-216ENST00000593223 G3V3G9 751 aa12.23□□□□□ -0.45
SMAD4-216ENST00000593223 DPY19L2Q6NUT2 758 aa12.23□□□□□ -0.45
SMAD4-216ENST00000593223 COLQQ9Y215 455 aaPredicted RBP12.23□□□□□ -0.45
SMAD4-216ENST00000593223 LCE2DQ5TA82 110 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-216ENST00000593223 L3MBTL3Q96JM7 780 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-216ENST00000593223 POTEFA5A3E0 1075 aa12.16□□□□□ -0.46
SMAD4-216ENST00000593223 BOLA1Q9Y3E2 137 aa12.15□□□□□ -0.46
SMAD4-216ENST00000593223 MICALL2Q8IY33 904 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms