RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 CD44P16070 742 aaKnown RBP7.92□□□□□ -1.14
ZNF540-207ENST00000589285 ECM2O94769 699 aaPredicted RBP7.89□□□□□ -1.15
ZNF540-207ENST00000589285 AMER1Q5JTC6 1135 aaPredicted RBP7.89□□□□□ -1.15
ZNF540-207ENST00000589285 ZRANB1Q9UGI0 708 aa7.88□□□□□ -1.15
ZNF540-207ENST00000589285 TRPC6Q9Y210 931 aa7.88□□□□□ -1.15
ZNF540-207ENST00000589285 PCDHB8Q9UN66 801 aa7.87□□□□□ -1.15
ZNF540-207ENST00000589285 PCDHB13Q9Y5F0 798 aa7.87□□□□□ -1.15
ZNF540-207ENST00000589285 CCDC61Q9Y6R9 512 aa7.86□□□□□ -1.15
ZNF540-207ENST00000589285 SP7Q8TDD2 431 aaPredicted RBP7.86□□□□□ -1.15
ZNF540-207ENST00000589285 FAM212AQ96EL1 285 aa7.86□□□□□ -1.15
ZNF540-207ENST00000589285 ZBTB47Q9UFB7 747 aaPredicted RBP7.85□□□□□ -1.15
ZNF540-207ENST00000589285 MAP3K13O43283 966 aa7.85□□□□□ -1.15
ZNF540-207ENST00000589285 NPM1P06748 294 aaKnown RBP eCLIP7.84□□□□□ -1.15
ZNF540-207ENST00000589285 C19orf67A6NJJ6 358 aa7.81□□□□□ -1.16
ZNF540-207ENST00000589285 GALR2O43603 387 aaPredicted RBP7.81□□□□□ -1.16
ZNF540-207ENST00000589285 IFNL1Q8IU54 200 aa7.8□□□□□ -1.16
ZNF540-207ENST00000589285 MS4A3Q96HJ5 214 aa7.78□□□□□ -1.16
ZNF540-207ENST00000589285 KIF12Q96FN5 646 aa7.77□□□□□ -1.17
ZNF540-207ENST00000589285 CHGAP10645 457 aaKnown RBP7.75□□□□□ -1.17
ZNF540-207ENST00000589285 GSE1Q14687 1217 aa7.74□□□□□ -1.17
ZNF540-207ENST00000589285 PAK3O75914 559 aaPredicted RBP7.72□□□□□ -1.17
ZNF540-207ENST00000589285 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.72□□□□□ -1.17
ZNF540-207ENST00000589285 ZFP91Q96JP5 570 aaPredicted RBP7.72□□□□□ -1.17
ZNF540-207ENST00000589285 GABBR2O75899 941 aa7.7□□□□□ -1.18
ZNF540-207ENST00000589285 STK25O00506 426 aa7.7□□□□□ -1.18
ZNF540-207ENST00000589285 BCL11BQ9C0K0 894 aaPredicted RBP7.69□□□□□ -1.18
ZNF540-207ENST00000589285 RIOK3O14730 519 aaKnown RBP7.68□□□□□ -1.18
ZNF540-207ENST00000589285 ZNF579Q8NAF0 562 aaKnown RBP7.67□□□□□ -1.18
ZNF540-207ENST00000589285 NKX1-1Q15270 411 aaPredicted RBP7.67□□□□□ -1.18
ZNF540-207ENST00000589285 STK24Q9Y6E0 443 aa7.66□□□□□ -1.18
ZNF540-207ENST00000589285 PELP1Q8IZL8 1130 aaKnown RBP7.64□□□□□ -1.19
ZNF540-207ENST00000589285 CABP2Q9NPB3 220 aa7.64□□□□□ -1.19
ZNF540-207ENST00000589285 POTEIP0CG38 1075 aa7.63□□□□□ -1.19
ZNF540-207ENST00000589285 PSEN1P49768 467 aa7.63□□□□□ -1.19
ZNF540-207ENST00000589285 TMEM106CQ9BVX2 250 aa7.63□□□□□ -1.19
ZNF540-207ENST00000589285 BMP2KQ9NSY1 1161 aaPredicted RBP7.62□□□□□ -1.19
ZNF540-207ENST00000589285 ATN1P54259 1190 aaPredicted RBP7.61□□□□□ -1.19
ZNF540-207ENST00000589285 TTLL13PA6NNM8 815 aa7.61□□□□□ -1.19
ZNF540-207ENST00000589285 EFCAB3Q8N7B9 438 aa7.6□□□□□ -1.19
ZNF540-207ENST00000589285 CHRM1P11229 460 aaPredicted RBP7.6□□□□□ -1.19
ZNF540-207ENST00000589285 CFAP44Q96MT7 982 aa7.6□□□□□ -1.19
ZNF540-207ENST00000589285 TRIM35Q9UPQ4 493 aa7.59□□□□□ -1.19
ZNF540-207ENST00000589285 ZNF467Q7Z7K2 595 aaPredicted RBP7.58□□□□□ -1.2
ZNF540-207ENST00000589285 PDAP1Q13442 181 aaKnown RBP7.58□□□□□ -1.2
ZNF540-207ENST00000589285 VGFO15240 615 aaPredicted RBP7.57□□□□□ -1.2
ZNF540-207ENST00000589285 PAXIP1Q6ZW49 1069 aaPredicted RBP7.57□□□□□ -1.2
ZNF540-207ENST00000589285 DPY19L2Q6NUT2 758 aa7.57□□□□□ -1.2
ZNF540-207ENST00000589285 PHF8Q9UPP1 1060 aa7.56□□□□□ -1.2
ZNF540-207ENST00000589285 PPP1R37O75864 691 aa7.54□□□□□ -1.2
ZNF540-207ENST00000589285 HS6ST3Q8IZP7 471 aa7.54□□□□□ -1.2
ZNF540-207ENST00000589285 TRIM41Q8WV44 630 aa7.54□□□□□ -1.2
ZNF540-207ENST00000589285 COLQQ9Y215 455 aaPredicted RBP7.54□□□□□ -1.2
ZNF540-207ENST00000589285 DCBLD2Q96PD2 775 aa7.53□□□□□ -1.2
ZNF540-207ENST00000589285 MFRPQ9BY79 579 aa7.53□□□□□ -1.2
ZNF540-207ENST00000589285 ATMINO43313 823 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-207ENST00000589285 POTEFA5A3E0 1075 aa7.5□□□□□ -1.21
ZNF540-207ENST00000589285 MS4A4AQ96JQ5 239 aa7.5□□□□□ -1.21
ZNF540-207ENST00000589285 TSHZ2Q9NRE2 1034 aa7.49□□□□□ -1.21
ZNF540-207ENST00000589285 GTPBP6O43824 516 aaPredicted RBP7.49□□□□□ -1.21
ZNF540-207ENST00000589285 POTEB2H3BUK9 544 aa7.47□□□□□ -1.21
ZNF540-207ENST00000589285 ASTLQ6HA08 431 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-207ENST00000589285 SGIP1Q9BQI5 828 aa7.47□□□□□ -1.21
ZNF540-207ENST00000589285 PLCB2Q00722 1185 aa7.47□□□□□ -1.21
ZNF540-207ENST00000589285 TIE1P35590 1138 aa7.46□□□□□ -1.21
ZNF540-207ENST00000589285 GOLGA2Q08379 1002 aa7.46□□□□□ -1.21
ZNF540-207ENST00000589285 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.45□□□□□ -1.22
ZNF540-207ENST00000589285 HAP1P54257 671 aaPredicted RBP7.45□□□□□ -1.22
ZNF540-207ENST00000589285 FBXO22Q8NEZ5 403 aa7.44□□□□□ -1.22
ZNF540-207ENST00000589285 BBXQ8WY36 941 aaPredicted RBP7.44□□□□□ -1.22
ZNF540-207ENST00000589285 CADPS2Q86UW7 1296 aa7.44□□□□□ -1.22
ZNF540-207ENST00000589285 MKRN3Q13064 507 aaKnown RBP7.43□□□□□ -1.22
ZNF540-207ENST00000589285 PDCD7Q8N8D1 485 aaKnown RBP7.43□□□□□ -1.22
ZNF540-207ENST00000589285 METRNQ9UJH8 293 aa7.43□□□□□ -1.22
ZNF540-207ENST00000589285 SPRYD3Q8NCJ5 442 aa7.43□□□□□ -1.22
ZNF540-207ENST00000589285 POTEJP0CG39 1038 aa7.42□□□□□ -1.22
ZNF540-207ENST00000589285 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.41□□□□□ -1.22
ZNF540-207ENST00000589285 IRX5P78411 483 aaPredicted RBP7.4□□□□□ -1.23
ZNF540-207ENST00000589285 KDM2AQ9Y2K7 1162 aa7.4□□□□□ -1.23
ZNF540-207ENST00000589285 LHX8Q68G74 356 aa7.39□□□□□ -1.23
ZNF540-207ENST00000589285 SEC24BO95487 1268 aa7.38□□□□□ -1.23
ZNF540-207ENST00000589285 SLC24A1O60721 1099 aa7.34□□□□□ -1.23
ZNF540-207ENST00000589285 TMEM92Q6UXU6 159 aa7.34□□□□□ -1.23
ZNF540-207ENST00000589285 TAOK2Q9UL54 1235 aa7.34□□□□□ -1.23
ZNF540-207ENST00000589285 PLCG2P16885 1265 aa7.33□□□□□ -1.24
ZNF540-207ENST00000589285 CLCN6P51797 869 aa7.33□□□□□ -1.24
ZNF540-207ENST00000589285 OCEL1Q9H607 264 aa7.33□□□□□ -1.24
ZNF540-207ENST00000589285 NLRP6P59044 892 aa7.32□□□□□ -1.24
ZNF540-207ENST00000589285 MICALL2Q8IY33 904 aa7.31□□□□□ -1.24
ZNF540-207ENST00000589285 SOX12O15370 315 aa7.3□□□□□ -1.24
ZNF540-207ENST00000589285 ILDR1Q86SU0 546 aaPredicted RBP7.3□□□□□ -1.24
ZNF540-207ENST00000589285 DNAJC5Q9H3Z4 198 aa7.3□□□□□ -1.24
ZNF540-207ENST00000589285 NCKAP5LQ9HCH0 1330 aa7.29□□□□□ -1.24
ZNF540-207ENST00000589285 SLC39A7Q92504 469 aa7.29□□□□□ -1.24
ZNF540-207ENST00000589285 C7P10643 843 aa7.28□□□□□ -1.24
ZNF540-207ENST00000589285 OTUD5Q96G74 571 aa7.27□□□□□ -1.25
ZNF540-207ENST00000589285 BOLA1Q9Y3E2 137 aa7.27□□□□□ -1.25
ZNF540-207ENST00000589285 C2orf72A6NCS6 295 aa7.25□□□□□ -1.25
ZNF540-207ENST00000589285 LARP6Q9BRS8 491 aaKnown RBP7.25□□□□□ -1.25
ZNF540-207ENST00000589285 IER5LQ5T953 404 aa7.24□□□□□ -1.25
ZNF540-207ENST00000589285 DSG2Q14126 1118 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms