RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 PLEKHG5O94827 1062 aa15.88■□□□□ 0.13
VMP1-208ENST00000588617 FXR2P51116 673 aaKnown RBP eCLIP15.87■□□□□ 0.13
VMP1-208ENST00000588617 SPDYE1Q8NFV5 336 aaPredicted RBP15.87■□□□□ 0.13
VMP1-208ENST00000588617 ZBTB47Q9UFB7 747 aaPredicted RBP15.87■□□□□ 0.13
VMP1-208ENST00000588617 NBR1Q14596 966 aa15.85■□□□□ 0.13
VMP1-208ENST00000588617 CLEC11AQ9Y240 323 aa15.83■□□□□ 0.12
VMP1-208ENST00000588617 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
VMP1-208ENST00000588617 DNAJC5Q9H3Z4 198 aa15.77■□□□□ 0.12
VMP1-208ENST00000588617 HS6ST3Q8IZP7 471 aa15.76■□□□□ 0.11
VMP1-208ENST00000588617 PRKAR2AP13861 404 aaKnown RBP15.64■□□□□ 0.09
VMP1-208ENST00000588617 GSE1Q14687 1217 aa15.64■□□□□ 0.09
VMP1-208ENST00000588617 RNF25Q96BH1 459 aaPredicted RBP15.62■□□□□ 0.09
VMP1-208ENST00000588617 PRR29P0C7W0 189 aa15.6■□□□□ 0.09
VMP1-208ENST00000588617 NKX1-1Q15270 411 aaPredicted RBP15.55■□□□□ 0.08
VMP1-208ENST00000588617 CHADLQ6NUI6 762 aa15.54■□□□□ 0.08
VMP1-208ENST00000588617 RIOK3O14730 519 aaKnown RBP15.52■□□□□ 0.08
VMP1-208ENST00000588617 DCAF8Q5TAQ9 597 aa15.52■□□□□ 0.08
VMP1-208ENST00000588617 HAX1O00165 279 aa15.51■□□□□ 0.07
VMP1-208ENST00000588617 GTPBP6O43824 516 aaPredicted RBP15.51■□□□□ 0.07
VMP1-208ENST00000588617 NUBP1P53384 320 aa15.49■□□□□ 0.07
VMP1-208ENST00000588617 STK25O00506 426 aa15.45■□□□□ 0.06
VMP1-208ENST00000588617 SP7Q8TDD2 431 aaPredicted RBP15.45■□□□□ 0.06
VMP1-208ENST00000588617 TIMELESSQ9UNS1 1208 aa15.44■□□□□ 0.06
VMP1-208ENST00000588617 TULP1O00294 542 aaPredicted RBP15.43■□□□□ 0.06
VMP1-208ENST00000588617 GTF3C3Q9Y5Q9 886 aa15.41■□□□□ 0.06
VMP1-208ENST00000588617 VGFO15240 615 aaPredicted RBP15.4■□□□□ 0.06
VMP1-208ENST00000588617 EVX2Q03828 476 aa15.4■□□□□ 0.06
VMP1-208ENST00000588617 C19orf67A6NJJ6 358 aa15.35■□□□□ 0.05
VMP1-208ENST00000588617 FAM212AQ96EL1 285 aa15.35■□□□□ 0.05
VMP1-208ENST00000588617 CREBZFQ9NS37 354 aa15.33■□□□□ 0.04
VMP1-208ENST00000588617 FARP1Q9Y4F1 1045 aaPredicted RBP15.32■□□□□ 0.04
VMP1-208ENST00000588617 RYDENQ9NUL5 291 aaKnown RBP15.3■□□□□ 0.04
VMP1-208ENST00000588617 STK24Q9Y6E0 443 aa15.3■□□□□ 0.04
VMP1-208ENST00000588617 CHRM1P11229 460 aaPredicted RBP15.28■□□□□ 0.04
VMP1-208ENST00000588617 BCL11BQ9C0K0 894 aaPredicted RBP15.28■□□□□ 0.04
VMP1-208ENST00000588617 SGIP1Q9BQI5 828 aa15.26■□□□□ 0.03
VMP1-208ENST00000588617 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.25■□□□□ 0.03
VMP1-208ENST00000588617 ZFP91Q96JP5 570 aaPredicted RBP15.25■□□□□ 0.03
VMP1-208ENST00000588617 ERICH6Q7L0X2 663 aa15.24■□□□□ 0.03
VMP1-208ENST00000588617 TMEM132AQ24JP5 1023 aa15.23■□□□□ 0.03
VMP1-208ENST00000588617 P3H3Q8IVL6 736 aa15.21■□□□□ 0.03
VMP1-208ENST00000588617 RASEFQ8IZ41 740 aa15.18■□□□□ 0.02
VMP1-208ENST00000588617 MNX1P50219 401 aaPredicted RBP15.17■□□□□ 0.02
VMP1-208ENST00000588617 CD44P16070 742 aaKnown RBP15.16■□□□□ 0.02
VMP1-208ENST00000588617 PYGBP11216 843 aa15.14■□□□□ 0.01
VMP1-208ENST00000588617 WDR70Q9NW82 654 aa15.12■□□□□ 0.01
VMP1-208ENST00000588617 LMOD2Q6P5Q4 547 aa15.05■□□□□ -0
VMP1-208ENST00000588617 ARXQ96QS3 562 aa15.05■□□□□ -0
VMP1-208ENST00000588617 GABBR2O75899 941 aa15.04■□□□□ -0
VMP1-208ENST00000588617 KCNV2Q8TDN2 545 aa15.04■□□□□ -0
VMP1-208ENST00000588617 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.03■□□□□ -0
VMP1-208ENST00000588617 CADPS2Q86UW7 1296 aa15.01□□□□□ -0.01
VMP1-208ENST00000588617 C14orf37Q86TY3 774 aa15□□□□□ -0.01
VMP1-208ENST00000588617 ZRANB1Q9UGI0 708 aa14.97□□□□□ -0.01
VMP1-208ENST00000588617 ZNF579Q8NAF0 562 aaKnown RBP14.96□□□□□ -0.01
VMP1-208ENST00000588617 ZNF467Q7Z7K2 595 aaPredicted RBP14.92□□□□□ -0.02
VMP1-208ENST00000588617 PAK3O75914 559 aaPredicted RBP14.88□□□□□ -0.03
VMP1-208ENST00000588617 PDAP1Q13442 181 aaKnown RBP14.87□□□□□ -0.03
VMP1-208ENST00000588617 CLCN6P51797 869 aa14.85□□□□□ -0.03
VMP1-208ENST00000588617 BRPF1P55201 1214 aaPredicted RBP14.85□□□□□ -0.03
VMP1-208ENST00000588617 TSPYL2Q9H2G4 693 aaPredicted RBP14.84□□□□□ -0.03
VMP1-208ENST00000588617 PHF12Q96QT6 1004 aa14.83□□□□□ -0.04
VMP1-208ENST00000588617 ARHGEF1Q92888 912 aaKnown RBP14.81□□□□□ -0.04
VMP1-208ENST00000588617 ZC3H15Q8WU90 426 aaKnown RBP14.8□□□□□ -0.04
VMP1-208ENST00000588617 MFRPQ9BY79 579 aa14.8□□□□□ -0.04
VMP1-208ENST00000588617 PCDHB8Q9UN66 801 aa14.8□□□□□ -0.04
VMP1-208ENST00000588617 PCDHB13Q9Y5F0 798 aa14.8□□□□□ -0.04
VMP1-208ENST00000588617 HOMEZQ8IX15 550 aa14.78□□□□□ -0.04
VMP1-208ENST00000588617 NEUROD2Q15784 382 aa14.77□□□□□ -0.05
VMP1-208ENST00000588617 DAXXQ9UER7 740 aaPredicted RBP14.77□□□□□ -0.05
VMP1-208ENST00000588617 GALR2O43603 387 aaPredicted RBP14.76□□□□□ -0.05
VMP1-208ENST00000588617 POTEIP0CG38 1075 aa14.76□□□□□ -0.05
VMP1-208ENST00000588617 E2F4Q16254 413 aa14.76□□□□□ -0.05
VMP1-208ENST00000588617 PSEN1P49768 467 aa14.75□□□□□ -0.05
VMP1-208ENST00000588617 SLC24A3Q9HC58 644 aa14.72□□□□□ -0.05
VMP1-208ENST00000588617 CCDC61Q9Y6R9 512 aa14.72□□□□□ -0.05
VMP1-208ENST00000588617 SEMA3EO15041 775 aa14.71□□□□□ -0.05
VMP1-208ENST00000588617 PPP1R37O75864 691 aa14.7□□□□□ -0.06
VMP1-208ENST00000588617 TESPA1A2RU30 521 aaPredicted RBP14.69□□□□□ -0.06
VMP1-208ENST00000588617 DCBLD2Q96PD2 775 aa14.66□□□□□ -0.06
VMP1-208ENST00000588617 NLRP6P59044 892 aa14.65□□□□□ -0.06
VMP1-208ENST00000588617 MS4A3Q96HJ5 214 aa14.64□□□□□ -0.07
VMP1-208ENST00000588617 EFCAB3Q8N7B9 438 aa14.61□□□□□ -0.07
VMP1-208ENST00000588617 FBXO22Q8NEZ5 403 aa14.61□□□□□ -0.07
VMP1-208ENST00000588617 SMYD5Q6GMV2 418 aa14.6□□□□□ -0.07
VMP1-208ENST00000588617 KIF12Q96FN5 646 aa14.6□□□□□ -0.07
VMP1-208ENST00000588617 SOX12O15370 315 aa14.59□□□□□ -0.07
VMP1-208ENST00000588617 PHF8Q9UPP1 1060 aa14.59□□□□□ -0.07
VMP1-208ENST00000588617 SUPT5HO00267 1087 aaKnown RBP14.58□□□□□ -0.08
VMP1-208ENST00000588617 CABP2Q9NPB3 220 aa14.58□□□□□ -0.08
VMP1-208ENST00000588617 ZMYND10O75800 440 aa14.56□□□□□ -0.08
VMP1-208ENST00000588617 LARP6Q9BRS8 491 aaKnown RBP14.54□□□□□ -0.08
VMP1-208ENST00000588617 MAP3K13O43283 966 aa14.53□□□□□ -0.08
VMP1-208ENST00000588617 PDE4AP27815 886 aa14.52□□□□□ -0.09
VMP1-208ENST00000588617 IFNL1Q8IU54 200 aa14.52□□□□□ -0.09
VMP1-208ENST00000588617 NCKAP5LQ9HCH0 1330 aa14.51□□□□□ -0.09
VMP1-208ENST00000588617 LHX8Q68G74 356 aa14.48□□□□□ -0.09
VMP1-208ENST00000588617 ASTLQ6HA08 431 aaPredicted RBP14.47□□□□□ -0.09
VMP1-208ENST00000588617 BARGINQ6ZT62 677 aa14.47□□□□□ -0.09
VMP1-208ENST00000588617 PELP1Q8IZL8 1130 aaKnown RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms