RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 TSPYL2Q9H2G4 693 aaPredicted RBP13.85□□□□□ -0.19
VMP1-205ENST00000587470 RASEFQ8IZ41 740 aa13.84□□□□□ -0.19
VMP1-205ENST00000587470 POTEB2H3BUK9 544 aa13.8□□□□□ -0.2
VMP1-205ENST00000587470 ASTLQ6HA08 431 aaPredicted RBP13.8□□□□□ -0.2
VMP1-205ENST00000587470 PLCD3Q8N3E9 789 aa13.8□□□□□ -0.2
VMP1-205ENST00000587470 KIF12Q96FN5 646 aa13.79□□□□□ -0.2
VMP1-205ENST00000587470 ATMINO43313 823 aaPredicted RBP13.76□□□□□ -0.21
VMP1-205ENST00000587470 NUBP1P53384 320 aa13.74□□□□□ -0.21
VMP1-205ENST00000587470 TRPC6Q9Y210 931 aa13.72□□□□□ -0.21
VMP1-205ENST00000587470 ZBTB47Q9UFB7 747 aaPredicted RBP13.7□□□□□ -0.22
VMP1-205ENST00000587470 MAP3K13O43283 966 aa13.69□□□□□ -0.22
VMP1-205ENST00000587470 OTUD5Q96G74 571 aa13.69□□□□□ -0.22
VMP1-205ENST00000587470 VASPP50552 380 aaPredicted RBP13.66□□□□□ -0.22
VMP1-205ENST00000587470 ATN1P54259 1190 aaPredicted RBP13.65□□□□□ -0.22
VMP1-205ENST00000587470 POTEJP0CG39 1038 aa13.64□□□□□ -0.23
VMP1-205ENST00000587470 BMP2KQ9NSY1 1161 aaPredicted RBP13.64□□□□□ -0.23
VMP1-205ENST00000587470 METRNQ9UJH8 293 aa13.63□□□□□ -0.23
VMP1-205ENST00000587470 SLC39A7Q92504 469 aa13.6□□□□□ -0.23
VMP1-205ENST00000587470 POTEFA5A3E0 1075 aa13.59□□□□□ -0.23
VMP1-205ENST00000587470 C7P10643 843 aa13.59□□□□□ -0.23
VMP1-205ENST00000587470 TIE1P35590 1138 aa13.58□□□□□ -0.24
VMP1-205ENST00000587470 SGIP1Q9BQI5 828 aa13.55□□□□□ -0.24
VMP1-205ENST00000587470 KLHL34Q8N239 644 aa13.53□□□□□ -0.24
VMP1-205ENST00000587470 TTLL13PA6NNM8 815 aa13.52□□□□□ -0.25
VMP1-205ENST00000587470 IFNL1Q8IU54 200 aa13.5□□□□□ -0.25
VMP1-205ENST00000587470 PCDHB13Q9Y5F0 798 aa13.5□□□□□ -0.25
VMP1-205ENST00000587470 FAM212AQ96EL1 285 aa13.49□□□□□ -0.25
VMP1-205ENST00000587470 IFNLR1Q8IU57 520 aaPredicted RBP13.46□□□□□ -0.25
VMP1-205ENST00000587470 COLQQ9Y215 455 aaPredicted RBP13.43□□□□□ -0.26
VMP1-205ENST00000587470 TRIM35Q9UPQ4 493 aa13.4□□□□□ -0.26
VMP1-205ENST00000587470 DCAF8Q5TAQ9 597 aa13.38□□□□□ -0.27
VMP1-205ENST00000587470 PYGBP11216 843 aa13.36□□□□□ -0.27
VMP1-205ENST00000587470 SPOCK2Q92563 424 aa13.36□□□□□ -0.27
VMP1-205ENST00000587470 IER5LQ5T953 404 aa13.35□□□□□ -0.27
VMP1-205ENST00000587470 MAMSTRQ6ZN01 415 aa13.33□□□□□ -0.28
VMP1-205ENST00000587470 TMEM106CQ9BVX2 250 aa13.33□□□□□ -0.28
VMP1-205ENST00000587470 GSE1Q14687 1217 aa13.32□□□□□ -0.28
VMP1-205ENST00000587470 LCE2DQ5TA82 110 aaPredicted RBP13.32□□□□□ -0.28
VMP1-205ENST00000587470 PCDHB8Q9UN66 801 aa13.3□□□□□ -0.28
VMP1-205ENST00000587470 IRX5P78411 483 aaPredicted RBP13.26□□□□□ -0.29
VMP1-205ENST00000587470 SCUBE2Q9NQ36 999 aa13.26□□□□□ -0.29
VMP1-205ENST00000587470 SEC24BO95487 1268 aa13.25□□□□□ -0.29
VMP1-205ENST00000587470 CHRM1P11229 460 aaPredicted RBP13.24□□□□□ -0.29
VMP1-205ENST00000587470 POTEMA6NI47 508 aa13.21□□□□□ -0.29
VMP1-205ENST00000587470 CIZ1Q9ULV3 898 aaPredicted RBP13.2□□□□□ -0.3
VMP1-205ENST00000587470 POTEGQ6S5H5 508 aa13.19□□□□□ -0.3
VMP1-205ENST00000587470 ZNF467Q7Z7K2 595 aaPredicted RBP13.14□□□□□ -0.31
VMP1-205ENST00000587470 PLCG2P16885 1265 aa13.13□□□□□ -0.31
VMP1-205ENST00000587470 OCEL1Q9H607 264 aa13.12□□□□□ -0.31
VMP1-205ENST00000587470 PDCD7Q8N8D1 485 aaKnown RBP13.1□□□□□ -0.31
VMP1-205ENST00000587470 TRIM41Q8WV44 630 aa13.08□□□□□ -0.32
VMP1-205ENST00000587470 FAM163AQ96GL9 167 aaPredicted RBP13.08□□□□□ -0.32
VMP1-205ENST00000587470 PSEN1P49768 467 aa13.06□□□□□ -0.32
VMP1-205ENST00000587470 ILDR1Q86SU0 546 aaPredicted RBP13.05□□□□□ -0.32
VMP1-205ENST00000587470 SLAIN1Q8ND83 568 aa13.03□□□□□ -0.32
VMP1-205ENST00000587470 PDAP1Q13442 181 aaKnown RBP13□□□□□ -0.33
VMP1-205ENST00000587470 PLSCR2Q9NRY7 297 aa13□□□□□ -0.33
VMP1-205ENST00000587470 PCDH10Q9P2E7 1040 aa12.96□□□□□ -0.33
VMP1-205ENST00000587470 ST18O60284 1047 aa12.94□□□□□ -0.34
VMP1-205ENST00000587470 MKRN3Q13064 507 aaKnown RBP12.94□□□□□ -0.34
VMP1-205ENST00000587470 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.92□□□□□ -0.342e-48■□□□□ 10.3
VMP1-205ENST00000587470 GOLGA2Q08379 1002 aa12.89□□□□□ -0.35
VMP1-205ENST00000587470 DPY19L2Q6NUT2 758 aa12.89□□□□□ -0.35
VMP1-205ENST00000587470 CABP2Q9NPB3 220 aa12.89□□□□□ -0.35
VMP1-205ENST00000587470 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.89□□□□□ -0.35
VMP1-205ENST00000587470 RNF25Q96BH1 459 aaPredicted RBP12.88□□□□□ -0.35
VMP1-205ENST00000587470 PKD2Q13563 968 aa12.87□□□□□ -0.35
VMP1-205ENST00000587470 RIOK3O14730 519 aaKnown RBP12.86□□□□□ -0.35
VMP1-205ENST00000587470 ECM2O94769 699 aaPredicted RBP12.85□□□□□ -0.35
VMP1-205ENST00000587470 L3MBTL3Q96JM7 780 aaPredicted RBP12.85□□□□□ -0.35
VMP1-205ENST00000587470 VGFO15240 615 aaPredicted RBP12.79□□□□□ -0.36
VMP1-205ENST00000587470 CDAN1Q8IWY9 1227 aa12.79□□□□□ -0.36
VMP1-205ENST00000587470 C3orf67Q6ZVT6 689 aa12.78□□□□□ -0.36
VMP1-205ENST00000587470 EFCAB3Q8N7B9 438 aa12.78□□□□□ -0.36
VMP1-205ENST00000587470 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
VMP1-205ENST00000587470 TMEM121BQ9BXQ6 578 aaPredicted RBP12.76□□□□□ -0.37
VMP1-205ENST00000587470 SNPHO15079 494 aa12.75□□□□□ -0.37
VMP1-205ENST00000587470 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.74□□□□□ -0.37
VMP1-205ENST00000587470 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
VMP1-205ENST00000587470 BOLA1Q9Y3E2 137 aa12.74□□□□□ -0.37
VMP1-205ENST00000587470 RGL2O15211 777 aa12.72□□□□□ -0.37
VMP1-205ENST00000587470 MARVELD3Q96A59 401 aa12.69□□□□□ -0.38
VMP1-205ENST00000587470 MS4A4AQ96JQ5 239 aa12.69□□□□□ -0.38
VMP1-205ENST00000587470 HOXB3P14651 431 aaPredicted RBP12.68□□□□□ -0.38
VMP1-205ENST00000587470 POTEB3A0JP26 581 aa12.65□□□□□ -0.38
VMP1-205ENST00000587470 POTEBQ6S5H4 581 aa12.65□□□□□ -0.38
VMP1-205ENST00000587470 TMEM92Q6UXU6 159 aa12.64□□□□□ -0.39
VMP1-205ENST00000587470 BCL11BQ9C0K0 894 aaPredicted RBP12.64□□□□□ -0.39
VMP1-205ENST00000587470 SOX12O15370 315 aa12.63□□□□□ -0.39
VMP1-205ENST00000587470 STK25O00506 426 aa12.62□□□□□ -0.39
VMP1-205ENST00000587470 MICALL2Q8IY33 904 aa12.61□□□□□ -0.39
VMP1-205ENST00000587470 PHF8Q9UPP1 1060 aa12.61□□□□□ -0.39
VMP1-205ENST00000587470 STK24Q9Y6E0 443 aa12.61□□□□□ -0.39
VMP1-205ENST00000587470 FBXO22Q8NEZ5 403 aa12.57□□□□□ -0.4
VMP1-205ENST00000587470 G3V3G9 751 aa12.56□□□□□ -0.4
VMP1-205ENST00000587470 EMP3P54852 163 aa12.55□□□□□ -0.4
VMP1-205ENST00000587470 HS3ST6Q96QI5 342 aa12.53□□□□□ -0.4
VMP1-205ENST00000587470 SPNS2Q8IVW8 549 aa12.52□□□□□ -0.41
VMP1-205ENST00000587470 KRTAP3-3Q9BYR6 98 aa12.52□□□□□ -0.41
VMP1-205ENST00000587470 KRTAP3-2Q9BYR7 98 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms