RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, humanhuman

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-204ENST00000586792 METRNQ9UJH8 293 aa14.54□□□□□ -0.08
ZNF540-204ENST00000586792 ATMINO43313 823 aaPredicted RBP14.53□□□□□ -0.08
ZNF540-204ENST00000586792 PROM2Q8N271 834 aa14.52□□□□□ -0.09
ZNF540-204ENST00000586792 TSPYL2Q9H2G4 693 aaPredicted RBP14.51□□□□□ -0.09
ZNF540-204ENST00000586792 MAMSTRQ6ZN01 415 aa14.49□□□□□ -0.09
ZNF540-204ENST00000586792 PLEKHG5O94827 1062 aa14.48□□□□□ -0.09
ZNF540-204ENST00000586792 POTEMA6NI47 508 aa14.47□□□□□ -0.09
ZNF540-204ENST00000586792 CCDC61Q9Y6R9 512 aa14.45□□□□□ -0.1
ZNF540-204ENST00000586792 POTEGQ6S5H5 508 aa14.42□□□□□ -0.1
ZNF540-204ENST00000586792 KIF12Q96FN5 646 aa14.39□□□□□ -0.11
ZNF540-204ENST00000586792 ATN1P54259 1190 aaPredicted RBP14.38□□□□□ -0.11
ZNF540-204ENST00000586792 PCDH10Q9P2E7 1040 aa14.38□□□□□ -0.11
ZNF540-204ENST00000586792 SCUBE2Q9NQ36 999 aa14.37□□□□□ -0.11
ZNF540-204ENST00000586792 MIER1Q8N108 512 aa14.36□□□□□ -0.11
ZNF540-204ENST00000586792 POTEJP0CG39 1038 aa14.35□□□□□ -0.11
ZNF540-204ENST00000586792 TIE1P35590 1138 aa14.3□□□□□ -0.12
ZNF540-204ENST00000586792 BMP2KQ9NSY1 1161 aaPredicted RBP14.29□□□□□ -0.12
ZNF540-204ENST00000586792 MAP3K13O43283 966 aa14.28□□□□□ -0.12
ZNF540-204ENST00000586792 RASEFQ8IZ41 740 aa14.25□□□□□ -0.13
ZNF540-204ENST00000586792 FAM163AQ96GL9 167 aaPredicted RBP14.22□□□□□ -0.13
ZNF540-204ENST00000586792 PLCD3Q8N3E9 789 aa14.21□□□□□ -0.13
ZNF540-204ENST00000586792 SGIP1Q9BQI5 828 aa14.21□□□□□ -0.13
ZNF540-204ENST00000586792 ZBTB47Q9UFB7 747 aaPredicted RBP14.21□□□□□ -0.13
ZNF540-204ENST00000586792 TRPC6Q9Y210 931 aa14.21□□□□□ -0.13
ZNF540-204ENST00000586792 SEC24BO95487 1268 aa14.2□□□□□ -0.14
ZNF540-204ENST00000586792 POTEFA5A3E0 1075 aa14.19□□□□□ -0.14
ZNF540-204ENST00000586792 TTLL13PA6NNM8 815 aa14.17□□□□□ -0.14
ZNF540-204ENST00000586792 IER5LQ5T953 404 aa14.14□□□□□ -0.15
ZNF540-204ENST00000586792 LCE2DQ5TA82 110 aaPredicted RBP14.13□□□□□ -0.15
ZNF540-204ENST00000586792 PCDHB13Q9Y5F0 798 aa14.13□□□□□ -0.15
ZNF540-204ENST00000586792 TRIM35Q9UPQ4 493 aa14.09□□□□□ -0.15
ZNF540-204ENST00000586792 COLQQ9Y215 455 aaPredicted RBP14.09□□□□□ -0.15
ZNF540-204ENST00000586792 NUBP1P53384 320 aa14.05□□□□□ -0.16
ZNF540-204ENST00000586792 FAM212AQ96EL1 285 aa14.04□□□□□ -0.16
ZNF540-204ENST00000586792 IFNL1Q8IU54 200 aa13.99□□□□□ -0.17
ZNF540-204ENST00000586792 TMEM106CQ9BVX2 250 aa13.97□□□□□ -0.17
ZNF540-204ENST00000586792 PLCG2P16885 1265 aa13.95□□□□□ -0.18
ZNF540-204ENST00000586792 SLAIN1Q8ND83 568 aa13.94□□□□□ -0.18
ZNF540-204ENST00000586792 CDAN1Q8IWY9 1227 aa13.91□□□□□ -0.18
ZNF540-204ENST00000586792 DCAF8Q5TAQ9 597 aa13.86□□□□□ -0.19
ZNF540-204ENST00000586792 IRX5P78411 483 aaPredicted RBP13.85□□□□□ -0.19
ZNF540-204ENST00000586792 ST18O60284 1047 aa13.84□□□□□ -0.19
ZNF540-204ENST00000586792 FKBP8Q14318 412 aa13.84□□□□□ -0.19
ZNF540-204ENST00000586792 OCEL1Q9H607 264 aa13.84□□□□□ -0.19
ZNF540-204ENST00000586792 SNPHO15079 494 aa13.79□□□□□ -0.2
ZNF540-204ENST00000586792 PYGBP11216 843 aa13.79□□□□□ -0.2
ZNF540-204ENST00000586792 FBXO3Q9UK99 471 aa13.79□□□□□ -0.2
ZNF540-204ENST00000586792 TMEM121BQ9BXQ6 578 aaPredicted RBP13.76□□□□□ -0.21
ZNF540-204ENST00000586792 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.76□□□□□ -0.21
ZNF540-204ENST00000586792 PCDHB8Q9UN66 801 aa13.71□□□□□ -0.21
ZNF540-204ENST00000586792 GSE1Q14687 1217 aa13.67□□□□□ -0.22
ZNF540-204ENST00000586792 ZNF467Q7Z7K2 595 aaPredicted RBP13.67□□□□□ -0.22
ZNF540-204ENST00000586792 GOLGA2Q08379 1002 aa13.66□□□□□ -0.22
ZNF540-204ENST00000586792 MKRN3Q13064 507 aaKnown RBP13.63□□□□□ -0.23
ZNF540-204ENST00000586792 KLHL34Q8N239 644 aa13.63□□□□□ -0.23
ZNF540-204ENST00000586792 L3MBTL3Q96JM7 780 aaPredicted RBP13.63□□□□□ -0.23
ZNF540-204ENST00000586792 C3orf67Q6ZVT6 689 aa13.61□□□□□ -0.23
ZNF540-204ENST00000586792 CHRM1P11229 460 aaPredicted RBP13.57□□□□□ -0.24
ZNF540-204ENST00000586792 SPNS2Q8IVW8 549 aa13.57□□□□□ -0.24
ZNF540-204ENST00000586792 PDCD7Q8N8D1 485 aaKnown RBP13.57□□□□□ -0.24
ZNF540-204ENST00000586792 MMRN1Q13201 1228 aa13.56□□□□□ -0.24
ZNF540-204ENST00000586792 MARVELD3Q96A59 401 aa13.55□□□□□ -0.24
ZNF540-204ENST00000586792 VASPP50552 380 aaPredicted RBP13.52□□□□□ -0.25
ZNF540-204ENST00000586792 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.25
ZNF540-204ENST00000586792 PSEN1P49768 467 aa13.5□□□□□ -0.25
ZNF540-204ENST00000586792 EMP3P54852 163 aa13.49□□□□□ -0.25
ZNF540-204ENST00000586792 PDAP1Q13442 181 aaKnown RBP13.43□□□□□ -0.26
ZNF540-204ENST00000586792 G3V3G9 751 aa13.41□□□□□ -0.26
ZNF540-204ENST00000586792 ILDR1Q86SU0 546 aaPredicted RBP13.41□□□□□ -0.26
ZNF540-204ENST00000586792 HS3ST6Q96QI5 342 aa13.38□□□□□ -0.27
ZNF540-204ENST00000586792 FAM205CA6NFA0 338 aa13.36□□□□□ -0.27
ZNF540-204ENST00000586792 SPOCK2Q92563 424 aa13.33□□□□□ -0.28
ZNF540-204ENST00000586792 CABP2Q9NPB3 220 aa13.33□□□□□ -0.28
ZNF540-204ENST00000586792 BOLA1Q9Y3E2 137 aa13.33□□□□□ -0.28
ZNF540-204ENST00000586792 CIZ1Q9ULV3 898 aaPredicted RBP13.32□□□□□ -0.28
ZNF540-204ENST00000586792 DPY19L2Q6NUT2 758 aa13.31□□□□□ -0.28
ZNF540-204ENST00000586792 KRTAP3-3Q9BYR6 98 aa13.3□□□□□ -0.28
ZNF540-204ENST00000586792 KRTAP3-2Q9BYR7 98 aa13.3□□□□□ -0.28
ZNF540-204ENST00000586792 POTEB3A0JP26 581 aa13.29□□□□□ -0.28
ZNF540-204ENST00000586792 POTEBQ6S5H4 581 aa13.29□□□□□ -0.28
ZNF540-204ENST00000586792 ZNF710Q8N1W2 664 aa13.27□□□□□ -0.29
ZNF540-204ENST00000586792 DOK7Q18PE1 504 aa13.24□□□□□ -0.29
ZNF540-204ENST00000586792 HOXB3P14651 431 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-204ENST00000586792 HOXB1P14653 301 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-204ENST00000586792 IFNLR1Q8IU57 520 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-204ENST00000586792 RIMBP2O15034 1052 aa13.19□□□□□ -0.3
ZNF540-204ENST00000586792 TRIM41Q8WV44 630 aa13.19□□□□□ -0.3
ZNF540-204ENST00000586792 ERBB3P21860 1342 aa13.17□□□□□ -0.3
ZNF540-204ENST00000586792 EFCAB3Q8N7B9 438 aa13.12□□□□□ -0.31
ZNF540-204ENST00000586792 ZSWIM6Q9HCJ5 1215 aa13.09□□□□□ -0.31
ZNF540-204ENST00000586792 SOX12O15370 315 aa13.05□□□□□ -0.32
ZNF540-204ENST00000586792 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
ZNF540-204ENST00000586792 MICALL2Q8IY33 904 aa13.04□□□□□ -0.32
ZNF540-204ENST00000586792 RNF166Q96A37 237 aaPredicted RBP13.04□□□□□ -0.32
ZNF540-204ENST00000586792 ZNF687Q8N1G0 1237 aa13□□□□□ -0.33
ZNF540-204ENST00000586792 MYT1LQ9UL68 1186 aa12.98□□□□□ -0.33
ZNF540-204ENST00000586792 RIOK3O14730 519 aaKnown RBP12.96□□□□□ -0.33
ZNF540-204ENST00000586792 PTGER2P43116 358 aa12.96□□□□□ -0.33
ZNF540-204ENST00000586792 GPR153Q6NV75 609 aa12.96□□□□□ -0.33
ZNF540-204ENST00000586792 TMEM92Q6UXU6 159 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms