RNA–Protein interactions for RNA: ENST00000584328.1

NF1-223, Transcript of neurofibromin 1, human

TSL 2

Gene NF1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-223	ENST00000584328	DCAF8	Q5TAQ9	597 aa		13.71	□□□□□ -0.21
NF1-223	ENST00000584328	PHF12	Q96QT6	1004 aa		13.71	□□□□□ -0.21
NF1-223	ENST00000584328	CCDC61	Q9Y6R9	512 aa		13.7	□□□□□ -0.22
NF1-223	ENST00000584328	GABBR2	O75899	941 aa		13.67	□□□□□ -0.22
NF1-223	ENST00000584328	CLCN6	P51797	869 aa		13.64	□□□□□ -0.23
NF1-223	ENST00000584328	GSE1	Q14687	1217 aa		13.64	□□□□□ -0.23
NF1-223	ENST00000584328	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.61	□□□□□ -0.23
NF1-223	ENST00000584328	KIF12	Q96FN5	646 aa		13.59	□□□□□ -0.23
NF1-223	ENST00000584328	GALR2	O43603	387 aa	Predicted RBP	13.55	□□□□□ -0.24
NF1-223	ENST00000584328	PYGB	P11216	843 aa		13.55	□□□□□ -0.24
NF1-223	ENST00000584328	MAP3K13	O43283	966 aa		13.54	□□□□□ -0.24
NF1-223	ENST00000584328	MS4A3	Q96HJ5	214 aa		13.53	□□□□□ -0.24
NF1-223	ENST00000584328	PCDHB13	Q9Y5F0	798 aa		13.49	□□□□□ -0.25
NF1-223	ENST00000584328	SGIP1	Q9BQI5	828 aa		13.47	□□□□□ -0.25
NF1-223	ENST00000584328	CHRM1	P11229	460 aa	Predicted RBP	13.45	□□□□□ -0.26
NF1-223	ENST00000584328	DCBLD2	Q96PD2	775 aa		13.44	□□□□□ -0.26
NF1-223	ENST00000584328	IFNL1	Q8IU54	200 aa		13.43	□□□□□ -0.26
NF1-223	ENST00000584328	TRIM41	Q8WV44	630 aa		13.43	□□□□□ -0.26
NF1-223	ENST00000584328	TRPC6	Q9Y210	931 aa		13.39	□□□□□ -0.27
NF1-223	ENST00000584328	POTEI	P0CG38	1075 aa		13.38	□□□□□ -0.27
NF1-223	ENST00000584328	PCDHB8	Q9UN66	801 aa		13.38	□□□□□ -0.27
NF1-223	ENST00000584328	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.36	□□□□□ -0.27
NF1-223	ENST00000584328	PKD2	Q13563	968 aa		13.35	□□□□□ -0.27
NF1-223	ENST00000584328	ECM2	O94769	699 aa	Predicted RBP	13.33	□□□□□ -0.28
NF1-223	ENST00000584328	TIE1	P35590	1138 aa		13.32	□□□□□ -0.28
NF1-223	ENST00000584328	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.32	□□□□□ -0.28
NF1-223	ENST00000584328	ASTL	Q6HA08	431 aa	Predicted RBP	13.31	□□□□□ -0.28
NF1-223	ENST00000584328	ATMIN	O43313	823 aa	Predicted RBP	13.3	□□□□□ -0.28
NF1-223	ENST00000584328	TTLL13P	A6NNM8	815 aa		13.27	□□□□□ -0.29
NF1-223	ENST00000584328	TMEM106C	Q9BVX2	250 aa		13.27	□□□□□ -0.29
NF1-223	ENST00000584328	ATN1	P54259	1190 aa	Predicted RBP	13.26	□□□□□ -0.29
NF1-223	ENST00000584328	RNF25	Q96BH1	459 aa	Predicted RBP	13.25	□□□□□ -0.29
NF1-223	ENST00000584328	RIOK3	O14730	519 aa	Known RBP	13.24	□□□□□ -0.29
NF1-223	ENST00000584328	PELP1	Q8IZL8	1130 aa	Known RBP	13.24	□□□□□ -0.29
NF1-223	ENST00000584328	PSEN1	P49768	467 aa		13.23	□□□□□ -0.29
NF1-223	ENST00000584328	PDAP1	Q13442	181 aa	Known RBP	13.23	□□□□□ -0.29
NF1-223	ENST00000584328	RGL2	O15211	777 aa		13.19	□□□□□ -0.3
NF1-223	ENST00000584328	TRIM35	Q9UPQ4	493 aa		13.19	□□□□□ -0.3
NF1-223	ENST00000584328	VGF	O15240	615 aa	Predicted RBP	13.16	□□□□□ -0.3
NF1-223	ENST00000584328	SLC39A7	Q92504	469 aa		13.15	□□□□□ -0.3
NF1-223	ENST00000584328	C7	P10643	843 aa		13.13	□□□□□ -0.31
NF1-223	ENST00000584328	TAOK2	Q9UL54	1235 aa		13.13	□□□□□ -0.31
NF1-223	ENST00000584328	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.12	□□□□□ -0.31
NF1-223	ENST00000584328	METRN	Q9UJH8	293 aa		13.12	□□□□□ -0.31
NF1-223	ENST00000584328	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.11	□□□□□ -0.31
NF1-223	ENST00000584328	ZFP91	Q96JP5	570 aa	Predicted RBP	13.11	□□□□□ -0.31
NF1-223	ENST00000584328	GOLGA2	Q08379	1002 aa		13.09	□□□□□ -0.31
NF1-223	ENST00000584328	IER5L	Q5T953	404 aa		13.07	□□□□□ -0.32
NF1-223	ENST00000584328	CABP2	Q9NPB3	220 aa		13.07	□□□□□ -0.32
NF1-223	ENST00000584328	RTN4	Q9NQC3	1192 aa	Known RBP	13.07	□□□□□ -0.32
NF1-223	ENST00000584328	MKRN3	Q13064	507 aa	Known RBP	13.05	□□□□□ -0.32
NF1-223	ENST00000584328	SEC24B	O95487	1268 aa		13.03	□□□□□ -0.32
NF1-223	ENST00000584328	STK25	O00506	426 aa		13.02	□□□□□ -0.33
NF1-223	ENST00000584328	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.02	□□□□□ -0.33
NF1-223	ENST00000584328	COLQ	Q9Y215	455 aa	Predicted RBP	13.01	□□□□□ -0.33
NF1-223	ENST00000584328	STK24	Q9Y6E0	443 aa		13.01	□□□□□ -0.33
NF1-223	ENST00000584328	POTEF	A5A3E0	1075 aa		13	□□□□□ -0.33
NF1-223	ENST00000584328	LHX8	Q68G74	356 aa		13	□□□□□ -0.33
NF1-223	ENST00000584328	IRX5	P78411	483 aa	Predicted RBP	12.99	□□□□□ -0.33
NF1-223	ENST00000584328	PLCG2	P16885	1265 aa		12.98	□□□□□ -0.33
NF1-223	ENST00000584328	EFCAB3	Q8N7B9	438 aa		12.98	□□□□□ -0.33
NF1-223	ENST00000584328	DCAF8L2	P0C7V8	631 aa		12.96	□□□□□ -0.33
NF1-223	ENST00000584328	POTEB2	H3BUK9	544 aa		12.95	□□□□□ -0.34
NF1-223	ENST00000584328	OCEL1	Q9H607	264 aa		12.95	□□□□□ -0.34
NF1-223	ENST00000584328	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.95	□□□□□ -0.34	7e-7	■□□□□ 10.6
NF1-223	ENST00000584328	CHGA	P10645	457 aa	Known RBP	12.92	□□□□□ -0.34
NF1-223	ENST00000584328	HS6ST3	Q8IZP7	471 aa		12.91	□□□□□ -0.34
NF1-223	ENST00000584328	PDCD7	Q8N8D1	485 aa	Known RBP	12.9	□□□□□ -0.34
NF1-223	ENST00000584328	SOX12	O15370	315 aa		12.89	□□□□□ -0.35
NF1-223	ENST00000584328	ILDR1	Q86SU0	546 aa	Predicted RBP	12.88	□□□□□ -0.35
NF1-223	ENST00000584328	POTEJ	P0CG39	1038 aa		12.86	□□□□□ -0.35
NF1-223	ENST00000584328	PHF8	Q9UPP1	1060 aa		12.85	□□□□□ -0.35
NF1-223	ENST00000584328	DPY19L2	Q6NUT2	758 aa		12.82	□□□□□ -0.36
NF1-223	ENST00000584328	NLRP6	P59044	892 aa		12.81	□□□□□ -0.36
NF1-223	ENST00000584328	MAMSTR	Q6ZN01	415 aa		12.8	□□□□□ -0.36
NF1-223	ENST00000584328	MFRP	Q9BY79	579 aa		12.8	□□□□□ -0.36
NF1-223	ENST00000584328	OTUD5	Q96G74	571 aa		12.79	□□□□□ -0.36
NF1-223	ENST00000584328	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.78	□□□□□ -0.36
NF1-223	ENST00000584328	MS4A4A	Q96JQ5	239 aa		12.78	□□□□□ -0.36
NF1-223	ENST00000584328	FBXO22	Q8NEZ5	403 aa		12.77	□□□□□ -0.37
NF1-223	ENST00000584328	SCUBE2	Q9NQ36	999 aa		12.77	□□□□□ -0.37
NF1-223	ENST00000584328	DNAJC5	Q9H3Z4	198 aa		12.76	□□□□□ -0.37
NF1-223	ENST00000584328		G3V3G9	751 aa		12.73	□□□□□ -0.37
NF1-223	ENST00000584328	NKX1-1	Q15270	411 aa	Predicted RBP	12.73	□□□□□ -0.37
NF1-223	ENST00000584328	BOLA1	Q9Y3E2	137 aa		12.73	□□□□□ -0.37
NF1-223	ENST00000584328	C3orf67	Q6ZVT6	689 aa		12.68	□□□□□ -0.38
NF1-223	ENST00000584328	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.68	□□□□□ -0.38
NF1-223	ENST00000584328	MICALL2	Q8IY33	904 aa		12.65	□□□□□ -0.38
NF1-223	ENST00000584328	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.65	□□□□□ -0.38
NF1-223	ENST00000584328	SLAIN1	Q8ND83	568 aa		12.63	□□□□□ -0.39
NF1-223	ENST00000584328	RYDEN	Q9NUL5	291 aa	Known RBP	12.63	□□□□□ -0.39
NF1-223	ENST00000584328	PPP1R37	O75864	691 aa		12.62	□□□□□ -0.39
NF1-223	ENST00000584328	BBX	Q8WY36	941 aa	Predicted RBP	12.62	□□□□□ -0.39
NF1-223	ENST00000584328	GTPBP6	O43824	516 aa	Predicted RBP	12.58	□□□□□ -0.4
NF1-223	ENST00000584328	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.54	□□□□□ -0.4
NF1-223	ENST00000584328	TMEM92	Q6UXU6	159 aa		12.5	□□□□□ -0.41
NF1-223	ENST00000584328	SPRYD3	Q8NCJ5	442 aa		12.47	□□□□□ -0.41
NF1-223	ENST00000584328	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.45	□□□□□ -0.42
NF1-223	ENST00000584328	CFAP44	Q96MT7	982 aa		12.43	□□□□□ -0.42
NF1-223	ENST00000584328	SNPH	O15079	494 aa		12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms