RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FAM163AQ96GL9 167 aaPredicted RBP14.95□□□□□ -0.02
SMCHD1-209ENST00000583441 ATMINO43313 823 aaPredicted RBP14.92□□□□□ -0.02
SMCHD1-209ENST00000583441 POTEJP0CG39 1038 aa14.92□□□□□ -0.02
SMCHD1-209ENST00000583441 MS4A3Q96HJ5 214 aa14.9□□□□□ -0.02
SMCHD1-209ENST00000583441 SCUBE2Q9NQ36 999 aa14.89□□□□□ -0.03
SMCHD1-209ENST00000583441 LCE2DQ5TA82 110 aaPredicted RBP14.85□□□□□ -0.03
SMCHD1-209ENST00000583441 MNX1P50219 401 aaPredicted RBP14.81□□□□□ -0.04
SMCHD1-209ENST00000583441 SPDYE4A6NLX3 237 aa14.77□□□□□ -0.05
SMCHD1-209ENST00000583441 ATN1P54259 1190 aaPredicted RBP14.73□□□□□ -0.05
SMCHD1-209ENST00000583441 TSPYL2Q9H2G4 693 aaPredicted RBP14.69□□□□□ -0.06
SMCHD1-209ENST00000583441 CDAN1Q8IWY9 1227 aa14.65□□□□□ -0.06
SMCHD1-209ENST00000583441 POTEFA5A3E0 1075 aa14.6□□□□□ -0.07
SMCHD1-209ENST00000583441 BMP2KQ9NSY1 1161 aaPredicted RBP14.59□□□□□ -0.07
SMCHD1-209ENST00000583441 CCDC61Q9Y6R9 512 aa14.59□□□□□ -0.07
SMCHD1-209ENST00000583441 KIF12Q96FN5 646 aa14.57□□□□□ -0.08
SMCHD1-209ENST00000583441 SEC24BO95487 1268 aa14.55□□□□□ -0.08
SMCHD1-209ENST00000583441 TIE1P35590 1138 aa14.51□□□□□ -0.09
SMCHD1-209ENST00000583441 TRPC6Q9Y210 931 aa14.5□□□□□ -0.09
SMCHD1-209ENST00000583441 COLQQ9Y215 455 aaPredicted RBP14.46□□□□□ -0.09
SMCHD1-209ENST00000583441 MAP3K13O43283 966 aa14.45□□□□□ -0.1
SMCHD1-209ENST00000583441 CSRNP3Q8WYN3 585 aa14.44□□□□□ -0.1
SMCHD1-209ENST00000583441 TTLL13PA6NNM8 815 aa14.4□□□□□ -0.1
SMCHD1-209ENST00000583441 ST18O60284 1047 aa14.39□□□□□ -0.11
SMCHD1-209ENST00000583441 SLAIN1Q8ND83 568 aa14.39□□□□□ -0.11
SMCHD1-209ENST00000583441 IER5LQ5T953 404 aa14.35□□□□□ -0.11
SMCHD1-209ENST00000583441 PLEKHG5O94827 1062 aa14.33□□□□□ -0.12
SMCHD1-209ENST00000583441 MMRN1Q13201 1228 aa14.33□□□□□ -0.12
SMCHD1-209ENST00000583441 TRIM35Q9UPQ4 493 aa14.33□□□□□ -0.12
SMCHD1-209ENST00000583441 SPNS2Q8IVW8 549 aa14.29□□□□□ -0.12
SMCHD1-209ENST00000583441 RASEFQ8IZ41 740 aa14.27□□□□□ -0.13
SMCHD1-209ENST00000583441 MIER1Q8N108 512 aa14.23□□□□□ -0.13
SMCHD1-209ENST00000583441 SGIP1Q9BQI5 828 aa14.23□□□□□ -0.13
SMCHD1-209ENST00000583441 PCDHB13Q9Y5F0 798 aa14.23□□□□□ -0.13
SMCHD1-209ENST00000583441 PLCG2P16885 1265 aa14.21□□□□□ -0.13
SMCHD1-209ENST00000583441 TMEM121BQ9BXQ6 578 aaPredicted RBP14.2□□□□□ -0.14
SMCHD1-209ENST00000583441 PROM2Q8N271 834 aa14.18□□□□□ -0.14
SMCHD1-209ENST00000583441 SNPHO15079 494 aa14.15□□□□□ -0.14
SMCHD1-209ENST00000583441 TMEM106CQ9BVX2 250 aa14.13□□□□□ -0.15
SMCHD1-209ENST00000583441 MARVELD3Q96A59 401 aa14.09□□□□□ -0.15
SMCHD1-209ENST00000583441 IFNL1Q8IU54 200 aa14.08□□□□□ -0.16
SMCHD1-209ENST00000583441 IRX5P78411 483 aaPredicted RBP14.06□□□□□ -0.16
SMCHD1-209ENST00000583441 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.05□□□□□ -0.16
SMCHD1-209ENST00000583441 PLCD3Q8N3E9 789 aa14.03□□□□□ -0.16
SMCHD1-209ENST00000583441 OCEL1Q9H607 264 aa14.02□□□□□ -0.17
SMCHD1-209ENST00000583441 ZBTB47Q9UFB7 747 aaPredicted RBP13.97□□□□□ -0.17
SMCHD1-209ENST00000583441 EMP3P54852 163 aa13.95□□□□□ -0.18
SMCHD1-209ENST00000583441 NUBP1P53384 320 aa13.94□□□□□ -0.18
SMCHD1-209ENST00000583441 FAM212AQ96EL1 285 aa13.93□□□□□ -0.18
SMCHD1-209ENST00000583441 EHMT2Q96KQ7 1210 aa13.9□□□□□ -0.18
SMCHD1-209ENST00000583441 HS3ST6Q96QI5 342 aa13.85□□□□□ -0.19
SMCHD1-209ENST00000583441 KRTAP3-3Q9BYR6 98 aa13.85□□□□□ -0.19
SMCHD1-209ENST00000583441 KRTAP3-2Q9BYR7 98 aa13.85□□□□□ -0.19
SMCHD1-209ENST00000583441 FAM205CA6NFA0 338 aa13.84□□□□□ -0.19
SMCHD1-209ENST00000583441 C3orf67Q6ZVT6 689 aa13.84□□□□□ -0.19
SMCHD1-209ENST00000583441 POTEB3A0JP26 581 aa13.79□□□□□ -0.2
SMCHD1-209ENST00000583441 POTEBQ6S5H4 581 aa13.79□□□□□ -0.2
SMCHD1-209ENST00000583441 L3MBTL3Q96JM7 780 aaPredicted RBP13.77□□□□□ -0.21
SMCHD1-209ENST00000583441 PYGBP11216 843 aa13.75□□□□□ -0.21
SMCHD1-209ENST00000583441 DCAF8Q5TAQ9 597 aa13.74□□□□□ -0.21
SMCHD1-209ENST00000583441 PCDHB8Q9UN66 801 aa13.73□□□□□ -0.21
SMCHD1-209ENST00000583441 PDCD7Q8N8D1 485 aaKnown RBP13.71□□□□□ -0.21
SMCHD1-209ENST00000583441 GOLGA2Q08379 1002 aa13.7□□□□□ -0.22
SMCHD1-209ENST00000583441 MKRN3Q13064 507 aaKnown RBP13.69□□□□□ -0.22
SMCHD1-209ENST00000583441 RNF166Q96A37 237 aaPredicted RBP13.61□□□□□ -0.23
SMCHD1-209ENST00000583441 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.61□□□□□ -0.233e-7■■■■□ 25.6
SMCHD1-209ENST00000583441 ZNF467Q7Z7K2 595 aaPredicted RBP13.55□□□□□ -0.24
SMCHD1-209ENST00000583441 ZNF710Q8N1W2 664 aa13.54□□□□□ -0.24
SMCHD1-209ENST00000583441 ERBB3P21860 1342 aa13.53□□□□□ -0.24
SMCHD1-209ENST00000583441 G3V3G9 751 aa13.51□□□□□ -0.25
SMCHD1-209ENST00000583441 HOXB3P14651 431 aaPredicted RBP13.49□□□□□ -0.25
SMCHD1-209ENST00000583441 HOXB1P14653 301 aaPredicted RBP13.49□□□□□ -0.25
SMCHD1-209ENST00000583441 MYT1LQ9UL68 1186 aa13.48□□□□□ -0.25
SMCHD1-209ENST00000583441 PSEN1P49768 467 aa13.44□□□□□ -0.26
SMCHD1-209ENST00000583441 DOK7Q18PE1 504 aa13.44□□□□□ -0.26
SMCHD1-209ENST00000583441 DPY19L2Q6NUT2 758 aa13.43□□□□□ -0.26
SMCHD1-209ENST00000583441 GSE1Q14687 1217 aa13.42□□□□□ -0.26
SMCHD1-209ENST00000583441 BOLA1Q9Y3E2 137 aa13.42□□□□□ -0.26
SMCHD1-209ENST00000583441 VARS2Q5ST30 1063 aaKnown RBP13.39□□□□□ -0.27
SMCHD1-209ENST00000583441 ILDR1Q86SU0 546 aaPredicted RBP13.39□□□□□ -0.27
SMCHD1-209ENST00000583441 RIMBP2O15034 1052 aa13.38□□□□□ -0.27
SMCHD1-209ENST00000583441 CHRM1P11229 460 aaPredicted RBP13.34□□□□□ -0.27
SMCHD1-209ENST00000583441 PTGER2P43116 358 aa13.32□□□□□ -0.28
SMCHD1-209ENST00000583441 ZNF687Q8N1G0 1237 aa13.3□□□□□ -0.28
SMCHD1-209ENST00000583441 PDAP1Q13442 181 aaKnown RBP13.29□□□□□ -0.28
SMCHD1-209ENST00000583441 KLHL34Q8N239 644 aa13.29□□□□□ -0.28
SMCHD1-209ENST00000583441 CABP2Q9NPB3 220 aa13.29□□□□□ -0.28
SMCHD1-209ENST00000583441 FBXO3Q9UK99 471 aa13.23□□□□□ -0.29
SMCHD1-209ENST00000583441 FKBP8Q14318 412 aa13.22□□□□□ -0.29
SMCHD1-209ENST00000583441 ZSWIM6Q9HCJ5 1215 aa13.22□□□□□ -0.29
SMCHD1-209ENST00000583441 ANKRD13DQ6ZTN6 518 aa13.21□□□□□ -0.29
SMCHD1-209ENST00000583441 GPR153Q6NV75 609 aa13.13□□□□□ -0.31
SMCHD1-209ENST00000583441 PLA2G2EQ9NZK7 142 aa13.09□□□□□ -0.31
SMCHD1-209ENST00000583441 LSM11P83369 360 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMCHD1-209ENST00000583441 TMEM92Q6UXU6 159 aa13.05□□□□□ -0.32
SMCHD1-209ENST00000583441 VASPP50552 380 aaPredicted RBP13.04□□□□□ -0.32
SMCHD1-209ENST00000583441 ARSIQ5FYB1 569 aa13.04□□□□□ -0.32
SMCHD1-209ENST00000583441 MICALL2Q8IY33 904 aa13.04□□□□□ -0.32
SMCHD1-209ENST00000583441 EFCAB3Q8N7B9 438 aa13.02□□□□□ -0.33
SMCHD1-209ENST00000583441 CIZ1Q9ULV3 898 aaPredicted RBP13.02□□□□□ -0.33
SMCHD1-209ENST00000583441 ZNF316A6NFI3 1004 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms