RNA–Protein interactions for RNA: ENST00000581790.5

NF1-221, Transcript of neurofibromin 1, humanhuman

TSL 2

Gene NF1, Length 1,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-221ENST00000581790 MS4A3Q96HJ5 214 aa12.98□□□□□ -0.33
NF1-221ENST00000581790 ATMINO43313 823 aaPredicted RBP12.94□□□□□ -0.34
NF1-221ENST00000581790 SLC39A7Q92504 469 aa12.94□□□□□ -0.34
NF1-221ENST00000581790 POTEJP0CG39 1038 aa12.93□□□□□ -0.34
NF1-221ENST00000581790 C7P10643 843 aa12.92□□□□□ -0.34
NF1-221ENST00000581790 PCDH10Q9P2E7 1040 aa12.88□□□□□ -0.35
NF1-221ENST00000581790 MAMSTRQ6ZN01 415 aa12.87□□□□□ -0.35
NF1-221ENST00000581790 LCE2DQ5TA82 110 aaPredicted RBP12.84□□□□□ -0.35
NF1-221ENST00000581790 ATN1P54259 1190 aaPredicted RBP12.8□□□□□ -0.36
NF1-221ENST00000581790 TSPYL2Q9H2G4 693 aaPredicted RBP12.79□□□□□ -0.36
NF1-221ENST00000581790 SCUBE2Q9NQ36 999 aa12.79□□□□□ -0.36
NF1-221ENST00000581790 CCDC61Q9Y6R9 512 aa12.79□□□□□ -0.36
NF1-221ENST00000581790 FAM163AQ96GL9 167 aaPredicted RBP12.73□□□□□ -0.37
NF1-221ENST00000581790 POTEFA5A3E0 1075 aa12.72□□□□□ -0.37
NF1-221ENST00000581790 KIF12Q96FN5 646 aa12.72□□□□□ -0.37
NF1-221ENST00000581790 BMP2KQ9NSY1 1161 aaPredicted RBP12.72□□□□□ -0.37
NF1-221ENST00000581790 PROM2Q8N271 834 aa12.69□□□□□ -0.38
NF1-221ENST00000581790 TRPC6Q9Y210 931 aa12.69□□□□□ -0.38
NF1-221ENST00000581790 TIE1P35590 1138 aa12.64□□□□□ -0.39
NF1-221ENST00000581790 EHMT2Q96KQ7 1210 aa12.64□□□□□ -0.39
NF1-221ENST00000581790 MAP3K13O43283 966 aa12.62□□□□□ -0.39
NF1-221ENST00000581790 COLQQ9Y215 455 aaPredicted RBP12.58□□□□□ -0.4
NF1-221ENST00000581790 TTLL13PA6NNM8 815 aa12.57□□□□□ -0.4
NF1-221ENST00000581790 RASEFQ8IZ41 740 aa12.57□□□□□ -0.4
NF1-221ENST00000581790 SEC24BO95487 1268 aa12.55□□□□□ -0.4
NF1-221ENST00000581790 CCDC180Q9P1Z9 1646 aa12.55□□□□□ -0.4
NF1-221ENST00000581790 PLEKHG5O94827 1062 aa12.52□□□□□ -0.41
NF1-221ENST00000581790 CDAN1Q8IWY9 1227 aa12.51□□□□□ -0.41
NF1-221ENST00000581790 IER5LQ5T953 404 aa12.49□□□□□ -0.41
NF1-221ENST00000581790 TRIM35Q9UPQ4 493 aa12.48□□□□□ -0.41
NF1-221ENST00000581790 MIER1Q8N108 512 aa12.47□□□□□ -0.41
NF1-221ENST00000581790 PCDHB13Q9Y5F0 798 aa12.44□□□□□ -0.42
NF1-221ENST00000581790 SGIP1Q9BQI5 828 aa12.43□□□□□ -0.42
NF1-221ENST00000581790 SLAIN1Q8ND83 568 aa12.41□□□□□ -0.42
NF1-221ENST00000581790 ST18O60284 1047 aa12.4□□□□□ -0.42
NF1-221ENST00000581790 IFNL1Q8IU54 200 aa12.36□□□□□ -0.43
NF1-221ENST00000581790 PLCD3Q8N3E9 789 aa12.34□□□□□ -0.43
NF1-221ENST00000581790 TMEM106CQ9BVX2 250 aa12.33□□□□□ -0.44
NF1-221ENST00000581790 PLCG2P16885 1265 aa12.32□□□□□ -0.44
NF1-221ENST00000581790 NUBP1P53384 320 aa12.32□□□□□ -0.44
NF1-221ENST00000581790 IRX5P78411 483 aaPredicted RBP12.28□□□□□ -0.44
NF1-221ENST00000581790 ZBTB47Q9UFB7 747 aaPredicted RBP12.28□□□□□ -0.44
NF1-221ENST00000581790 FAM212AQ96EL1 285 aa12.25□□□□□ -0.45
NF1-221ENST00000581790 MMRN1Q13201 1228 aa12.24□□□□□ -0.45
NF1-221ENST00000581790 TMEM121BQ9BXQ6 578 aaPredicted RBP12.24□□□□□ -0.45
NF1-221ENST00000581790 SPNS2Q8IVW8 549 aa12.22□□□□□ -0.45
NF1-221ENST00000581790 OCEL1Q9H607 264 aa12.19□□□□□ -0.46
NF1-221ENST00000581790 SNPHO15079 494 aa12.16□□□□□ -0.46
NF1-221ENST00000581790 MARVELD3Q96A59 401 aa12.15□□□□□ -0.46
NF1-221ENST00000581790 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.15□□□□□ -0.46
NF1-221ENST00000581790 PYGBP11216 843 aa12.09□□□□□ -0.47
NF1-221ENST00000581790 PCDHB8Q9UN66 801 aa12.06□□□□□ -0.48
NF1-221ENST00000581790 ZCCHC6Q5VYS8 1495 aaKnown RBP12.05□□□□□ -0.48
NF1-221ENST00000581790 DCAF8Q5TAQ9 597 aa12.04□□□□□ -0.48
NF1-221ENST00000581790 PDCD7Q8N8D1 485 aaKnown RBP12.04□□□□□ -0.48
NF1-221ENST00000581790 EMP3P54852 163 aa12.03□□□□□ -0.48
NF1-221ENST00000581790 C3orf67Q6ZVT6 689 aa12.02□□□□□ -0.49
NF1-221ENST00000581790 KRTAP3-3Q9BYR6 98 aa11.97□□□□□ -0.49
NF1-221ENST00000581790 KRTAP3-2Q9BYR7 98 aa11.97□□□□□ -0.49
NF1-221ENST00000581790 HS3ST6Q96QI5 342 aa11.96□□□□□ -0.49
NF1-221ENST00000581790 POTEB3A0JP26 581 aa11.95□□□□□ -0.5
NF1-221ENST00000581790 POTEBQ6S5H4 581 aa11.95□□□□□ -0.5
NF1-221ENST00000581790 L3MBTL3Q96JM7 780 aaPredicted RBP11.95□□□□□ -0.5
NF1-221ENST00000581790 GOLGA2Q08379 1002 aa11.92□□□□□ -0.5
NF1-221ENST00000581790 MKRN3Q13064 507 aaKnown RBP11.92□□□□□ -0.5
NF1-221ENST00000581790 FAM205CA6NFA0 338 aa11.91□□□□□ -0.5
NF1-221ENST00000581790 ZNF467Q7Z7K2 595 aaPredicted RBP11.91□□□□□ -0.5
NF1-221ENST00000581790 FKBP8Q14318 412 aa11.89□□□□□ -0.51
NF1-221ENST00000581790 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.88□□□□□ -0.518e-7■■■□□ 14.8
NF1-221ENST00000581790 DCAF1Q9Y4B6 1507 aa11.86□□□□□ -0.51
NF1-221ENST00000581790 GSE1Q14687 1217 aa11.83□□□□□ -0.52
NF1-221ENST00000581790 PSEN1P49768 467 aa11.82□□□□□ -0.52
NF1-221ENST00000581790 ILDR1Q86SU0 546 aaPredicted RBP11.82□□□□□ -0.52
NF1-221ENST00000581790 CHRM1P11229 460 aaPredicted RBP11.79□□□□□ -0.52
NF1-221ENST00000581790 FBXO3Q9UK99 471 aa11.79□□□□□ -0.52
NF1-221ENST00000581790 HOXB3P14651 431 aaPredicted RBP11.78□□□□□ -0.52
NF1-221ENST00000581790 DPY19L2Q6NUT2 758 aa11.76□□□□□ -0.53
NF1-221ENST00000581790 KLHL34Q8N239 644 aa11.73□□□□□ -0.53
NF1-221ENST00000581790 BOLA1Q9Y3E2 137 aa11.73□□□□□ -0.53
NF1-221ENST00000581790 HOXB1P14653 301 aaPredicted RBP11.72□□□□□ -0.53
NF1-221ENST00000581790 PDAP1Q13442 181 aaKnown RBP11.72□□□□□ -0.53
NF1-221ENST00000581790 SHROOM4Q9ULL8 1493 aa11.71□□□□□ -0.53
NF1-221ENST00000581790 G3V3G9 751 aa11.71□□□□□ -0.53
NF1-221ENST00000581790 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
NF1-221ENST00000581790 VASPP50552 380 aaPredicted RBP11.7□□□□□ -0.54
NF1-221ENST00000581790 ZNF710Q8N1W2 664 aa11.69□□□□□ -0.54
NF1-221ENST00000581790 CABP2Q9NPB3 220 aa11.69□□□□□ -0.54
NF1-221ENST00000581790 RNF166Q96A37 237 aaPredicted RBP11.68□□□□□ -0.54
NF1-221ENST00000581790 ERBB3P21860 1342 aa11.67□□□□□ -0.54
NF1-221ENST00000581790 DOK7Q18PE1 504 aa11.67□□□□□ -0.54
NF1-221ENST00000581790 MYO15BQ96JP2 1530 aa11.66□□□□□ -0.54
NF1-221ENST00000581790 VARS2Q5ST30 1063 aaKnown RBP11.6□□□□□ -0.55
NF1-221ENST00000581790 MYT1LQ9UL68 1186 aa11.59□□□□□ -0.55
NF1-221ENST00000581790 ABCC9O60706 1549 aa11.59□□□□□ -0.55
NF1-221ENST00000581790 RIMBP2O15034 1052 aa11.58□□□□□ -0.56
NF1-221ENST00000581790 NACADO15069 1562 aa11.58□□□□□ -0.56
NF1-221ENST00000581790 ZSWIM6Q9HCJ5 1215 aa11.52□□□□□ -0.57
NF1-221ENST00000581790 ZNF687Q8N1G0 1237 aa11.51□□□□□ -0.57
NF1-221ENST00000581790 CIZ1Q9ULV3 898 aaPredicted RBP11.51□□□□□ -0.57
NF1-221ENST00000581790 TMEM92Q6UXU6 159 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms