RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
SMCHD1-207ENST00000581711 MIER1Q8N108 512 aa17.28■□□□□ 0.36
SMCHD1-207ENST00000581711 ATMINO43313 823 aaPredicted RBP17.25■□□□□ 0.35
SMCHD1-207ENST00000581711 METRNQ9UJH8 293 aa17.21■□□□□ 0.35
SMCHD1-207ENST00000581711 KIF12Q96FN5 646 aa17.2■□□□□ 0.34
SMCHD1-207ENST00000581711 SLC39A7Q92504 469 aa17.19■□□□□ 0.34
SMCHD1-207ENST00000581711 RASEFQ8IZ41 740 aa17.18■□□□□ 0.34
SMCHD1-207ENST00000581711 C7P10643 843 aa17.17■□□□□ 0.34
SMCHD1-207ENST00000581711 PLCD3Q8N3E9 789 aa17.12■□□□□ 0.33
SMCHD1-207ENST00000581711 ATN1P54259 1190 aaPredicted RBP17.11■□□□□ 0.33
SMCHD1-207ENST00000581711 MAP3K13O43283 966 aa17.09■□□□□ 0.33
SMCHD1-207ENST00000581711 TRPC6Q9Y210 931 aa17.07■□□□□ 0.32
SMCHD1-207ENST00000581711 BMP2KQ9NSY1 1161 aaPredicted RBP17.06■□□□□ 0.32
SMCHD1-207ENST00000581711 POTEJP0CG39 1038 aa17.05■□□□□ 0.32
SMCHD1-207ENST00000581711 FKBP8Q14318 412 aa17.02■□□□□ 0.32
SMCHD1-207ENST00000581711 ZBTB47Q9UFB7 747 aaPredicted RBP17.01■□□□□ 0.31
SMCHD1-207ENST00000581711 TIE1P35590 1138 aa17■□□□□ 0.31
SMCHD1-207ENST00000581711 NUBP1P53384 320 aa16.97■□□□□ 0.31
SMCHD1-207ENST00000581711 MAMSTRQ6ZN01 415 aa16.96■□□□□ 0.31
SMCHD1-207ENST00000581711 POTEFA5A3E0 1075 aa16.92■□□□□ 0.3
SMCHD1-207ENST00000581711 TTLL13PA6NNM8 815 aa16.92■□□□□ 0.3
SMCHD1-207ENST00000581711 PLSCR2Q9NRY7 297 aa16.91■□□□□ 0.3
SMCHD1-207ENST00000581711 SGIP1Q9BQI5 828 aa16.9■□□□□ 0.3
SMCHD1-207ENST00000581711 PCDHB13Q9Y5F0 798 aa16.9■□□□□ 0.3
SMCHD1-207ENST00000581711 POTEMA6NI47 508 aa16.89■□□□□ 0.29
SMCHD1-207ENST00000581711 SCUBE2Q9NQ36 999 aa16.87■□□□□ 0.29
SMCHD1-207ENST00000581711 FAM212AQ96EL1 285 aa16.86■□□□□ 0.29
SMCHD1-207ENST00000581711 POTEGQ6S5H5 508 aa16.84■□□□□ 0.29
SMCHD1-207ENST00000581711 IFNL1Q8IU54 200 aa16.81■□□□□ 0.28
SMCHD1-207ENST00000581711 TRIM35Q9UPQ4 493 aa16.81■□□□□ 0.28
SMCHD1-207ENST00000581711 COLQQ9Y215 455 aaPredicted RBP16.81■□□□□ 0.28
SMCHD1-207ENST00000581711 SEC24BO95487 1268 aa16.8■□□□□ 0.28
SMCHD1-207ENST00000581711 IER5LQ5T953 404 aa16.76■□□□□ 0.27
SMCHD1-207ENST00000581711 FBXO3Q9UK99 471 aa16.72■□□□□ 0.27
SMCHD1-207ENST00000581711 LCE2DQ5TA82 110 aaPredicted RBP16.71■□□□□ 0.27
SMCHD1-207ENST00000581711 TMEM106CQ9BVX2 250 aa16.7■□□□□ 0.26
SMCHD1-207ENST00000581711 FAM163AQ96GL9 167 aaPredicted RBP16.68■□□□□ 0.26
SMCHD1-207ENST00000581711 DCAF8Q5TAQ9 597 aa16.67■□□□□ 0.26
SMCHD1-207ENST00000581711 PYGBP11216 843 aa16.63■□□□□ 0.25
SMCHD1-207ENST00000581711 PCDH10Q9P2E7 1040 aa16.6■□□□□ 0.25
SMCHD1-207ENST00000581711 PLCG2P16885 1265 aa16.57■□□□□ 0.24
SMCHD1-207ENST00000581711 VASPP50552 380 aaPredicted RBP16.54■□□□□ 0.24
SMCHD1-207ENST00000581711 IRX5P78411 483 aaPredicted RBP16.54■□□□□ 0.24
SMCHD1-207ENST00000581711 PCDHB8Q9UN66 801 aa16.53■□□□□ 0.24
SMCHD1-207ENST00000581711 KLHL34Q8N239 644 aa16.51■□□□□ 0.23
SMCHD1-207ENST00000581711 SLAIN1Q8ND83 568 aa16.49■□□□□ 0.23
SMCHD1-207ENST00000581711 OCEL1Q9H607 264 aa16.46■□□□□ 0.23
SMCHD1-207ENST00000581711 GSE1Q14687 1217 aa16.45■□□□□ 0.22
SMCHD1-207ENST00000581711 ZNF467Q7Z7K2 595 aaPredicted RBP16.39■□□□□ 0.21
SMCHD1-207ENST00000581711 ST18O60284 1047 aa16.34■□□□□ 0.21
SMCHD1-207ENST00000581711 CHRM1P11229 460 aaPredicted RBP16.33■□□□□ 0.2
SMCHD1-207ENST00000581711 GOLGA2Q08379 1002 aa16.28■□□□□ 0.2
SMCHD1-207ENST00000581711 CDAN1Q8IWY9 1227 aa16.28■□□□□ 0.2
SMCHD1-207ENST00000581711 PDCD7Q8N8D1 485 aaKnown RBP16.28■□□□□ 0.2
SMCHD1-207ENST00000581711 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.28■□□□□ 0.2
SMCHD1-207ENST00000581711 MKRN3Q13064 507 aaKnown RBP16.26■□□□□ 0.19
SMCHD1-207ENST00000581711 PSEN1P49768 467 aa16.25■□□□□ 0.19
SMCHD1-207ENST00000581711 IFNLR1Q8IU57 520 aaPredicted RBP16.23■□□□□ 0.19
SMCHD1-207ENST00000581711 SPOCK2Q92563 424 aa16.21■□□□□ 0.19
SMCHD1-207ENST00000581711 SNPHO15079 494 aa16.18■□□□□ 0.18
SMCHD1-207ENST00000581711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.18■□□□□ 0.181e-10■■■■□ 24.6
SMCHD1-207ENST00000581711 PDAP1Q13442 181 aaKnown RBP16.17■□□□□ 0.18
SMCHD1-207ENST00000581711 C3orf67Q6ZVT6 689 aa16.17■□□□□ 0.18
SMCHD1-207ENST00000581711 TMEM121BQ9BXQ6 578 aaPredicted RBP16.17■□□□□ 0.18
SMCHD1-207ENST00000581711 L3MBTL3Q96JM7 780 aaPredicted RBP16.16■□□□□ 0.18
SMCHD1-207ENST00000581711 CIZ1Q9ULV3 898 aaPredicted RBP16.16■□□□□ 0.18
SMCHD1-207ENST00000581711 ILDR1Q86SU0 546 aaPredicted RBP16.1■□□□□ 0.17
SMCHD1-207ENST00000581711 MARVELD3Q96A59 401 aa16.06■□□□□ 0.16
SMCHD1-207ENST00000581711 CABP2Q9NPB3 220 aa16.06■□□□□ 0.16
SMCHD1-207ENST00000581711 DPY19L2Q6NUT2 758 aa16.02■□□□□ 0.16
SMCHD1-207ENST00000581711 BOLA1Q9Y3E2 137 aa15.94■□□□□ 0.14
SMCHD1-207ENST00000581711 EMP3P54852 163 aa15.93■□□□□ 0.14
SMCHD1-207ENST00000581711 G3V3G9 751 aa15.92■□□□□ 0.14
SMCHD1-207ENST00000581711 TRIM41Q8WV44 630 aa15.92■□□□□ 0.14
SMCHD1-207ENST00000581711 SPNS2Q8IVW8 549 aa15.89■□□□□ 0.13
SMCHD1-207ENST00000581711 MMRN1Q13201 1228 aa15.86■□□□□ 0.13
SMCHD1-207ENST00000581711 EFCAB3Q8N7B9 438 aa15.85■□□□□ 0.13
SMCHD1-207ENST00000581711 HS3ST6Q96QI5 342 aa15.82■□□□□ 0.12
SMCHD1-207ENST00000581711 POTEB3A0JP26 581 aa15.81■□□□□ 0.12
SMCHD1-207ENST00000581711 FAM205CA6NFA0 338 aa15.81■□□□□ 0.12
SMCHD1-207ENST00000581711 HOXB3P14651 431 aaPredicted RBP15.81■□□□□ 0.12
SMCHD1-207ENST00000581711 POTEBQ6S5H4 581 aa15.81■□□□□ 0.12
SMCHD1-207ENST00000581711 KRTAP3-3Q9BYR6 98 aa15.75■□□□□ 0.11
SMCHD1-207ENST00000581711 KRTAP3-2Q9BYR7 98 aa15.75■□□□□ 0.11
SMCHD1-207ENST00000581711 RIOK3O14730 519 aaKnown RBP15.74■□□□□ 0.11
SMCHD1-207ENST00000581711 RNF25Q96BH1 459 aaPredicted RBP15.74■□□□□ 0.11
SMCHD1-207ENST00000581711 ZNF710Q8N1W2 664 aa15.71■□□□□ 0.11
SMCHD1-207ENST00000581711 DOK7Q18PE1 504 aa15.7■□□□□ 0.1
SMCHD1-207ENST00000581711 HOXB1P14653 301 aaPredicted RBP15.69■□□□□ 0.1
SMCHD1-207ENST00000581711 MICALL2Q8IY33 904 aa15.69■□□□□ 0.1
SMCHD1-207ENST00000581711 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.68■□□□□ 0.1
SMCHD1-207ENST00000581711 ZFP91Q96JP5 570 aaPredicted RBP15.68■□□□□ 0.1
SMCHD1-207ENST00000581711 SOX12O15370 315 aa15.67■□□□□ 0.1
SMCHD1-207ENST00000581711 VGFO15240 615 aaPredicted RBP15.66■□□□□ 0.1
SMCHD1-207ENST00000581711 MS4A4AQ96JQ5 239 aa15.64■□□□□ 0.09
SMCHD1-207ENST00000581711 TMEM92Q6UXU6 159 aa15.63■□□□□ 0.09
SMCHD1-207ENST00000581711 RIMBP2O15034 1052 aa15.61■□□□□ 0.09
SMCHD1-207ENST00000581711 PHF8Q9UPP1 1060 aa15.61■□□□□ 0.09
SMCHD1-207ENST00000581711 ERBB3P21860 1342 aa15.6■□□□□ 0.09
SMCHD1-207ENST00000581711 ZSWIM6Q9HCJ5 1215 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms