RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ZRANB1Q9UGI0 708 aa17.9■□□□□ 0.46
SS18-214ENST00000580003 RTN4Q9NQC3 1192 aaKnown RBP17.86■□□□□ 0.45
SS18-214ENST00000580003 TRIM41Q8WV44 630 aa17.82■□□□□ 0.44
SS18-214ENST00000580003 PKD2Q13563 968 aa17.8■□□□□ 0.44
SS18-214ENST00000580003 CCDC61Q9Y6R9 512 aa17.8■□□□□ 0.44
SS18-214ENST00000580003 ECM2O94769 699 aaPredicted RBP17.76■□□□□ 0.43
SS18-214ENST00000580003 EVX2Q03828 476 aa17.74■□□□□ 0.43
SS18-214ENST00000580003 ZNF579Q8NAF0 562 aaKnown RBP17.74■□□□□ 0.43
SS18-214ENST00000580003 PYGBP11216 843 aa17.73■□□□□ 0.43
SS18-214ENST00000580003 PHF12Q96QT6 1004 aa17.71■□□□□ 0.43
SS18-214ENST00000580003 CHRM1P11229 460 aaPredicted RBP17.69■□□□□ 0.42
SS18-214ENST00000580003 KIF12Q96FN5 646 aa17.63■□□□□ 0.41
SS18-214ENST00000580003 MAP3K13O43283 966 aa17.59■□□□□ 0.41
SS18-214ENST00000580003 CLCN6P51797 869 aa17.59■□□□□ 0.41
SS18-214ENST00000580003 PCDHB13Q9Y5F0 798 aa17.59■□□□□ 0.41
SS18-214ENST00000580003 SGIP1Q9BQI5 828 aa17.57■□□□□ 0.4
SS18-214ENST00000580003 ZNF467Q7Z7K2 595 aaPredicted RBP17.54■□□□□ 0.4
SS18-214ENST00000580003 RGL2O15211 777 aa17.53■□□□□ 0.4
SS18-214ENST00000580003 SP7Q8TDD2 431 aaPredicted RBP17.51■□□□□ 0.39
SS18-214ENST00000580003 RIOK3O14730 519 aaKnown RBP17.5■□□□□ 0.39
SS18-214ENST00000580003 MS4A3Q96HJ5 214 aa17.49■□□□□ 0.39
SS18-214ENST00000580003 RNF25Q96BH1 459 aaPredicted RBP17.48■□□□□ 0.39
SS18-214ENST00000580003 PCDHB8Q9UN66 801 aa17.48■□□□□ 0.39
SS18-214ENST00000580003 DCAF8L2P0C7V8 631 aa17.47■□□□□ 0.39
SS18-214ENST00000580003 IFNL1Q8IU54 200 aa17.47■□□□□ 0.39
SS18-214ENST00000580003 TAOK2Q9UL54 1235 aa17.47■□□□□ 0.39
SS18-214ENST00000580003 GABBR2O75899 941 aa17.46■□□□□ 0.39
SS18-214ENST00000580003 GALR2O43603 387 aaPredicted RBP17.43■□□□□ 0.38
SS18-214ENST00000580003 VGFO15240 615 aaPredicted RBP17.4■□□□□ 0.38
SS18-214ENST00000580003 PDAP1Q13442 181 aaKnown RBP17.37■□□□□ 0.37
SS18-214ENST00000580003 PSEN1P49768 467 aa17.33■□□□□ 0.36
SS18-214ENST00000580003 TRPC6Q9Y210 931 aa17.3■□□□□ 0.36
SS18-214ENST00000580003 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.29■□□□□ 0.36
SS18-214ENST00000580003 ZFP91Q96JP5 570 aaPredicted RBP17.29■□□□□ 0.36
SS18-214ENST00000580003 TIE1P35590 1138 aa17.28■□□□□ 0.36
SS18-214ENST00000580003 DCBLD2Q96PD2 775 aa17.26■□□□□ 0.35
SS18-214ENST00000580003 TMEM106CQ9BVX2 250 aa17.26■□□□□ 0.35
SS18-214ENST00000580003 STK25O00506 426 aa17.24■□□□□ 0.35
SS18-214ENST00000580003 CHGAP10645 457 aaKnown RBP17.24■□□□□ 0.35
SS18-214ENST00000580003 BMP2KQ9NSY1 1161 aaPredicted RBP17.22■□□□□ 0.35
SS18-214ENST00000580003 BCL11BQ9C0K0 894 aaPredicted RBP17.2■□□□□ 0.34
SS18-214ENST00000580003 STK24Q9Y6E0 443 aa17.2■□□□□ 0.34
SS18-214ENST00000580003 TTLL13PA6NNM8 815 aa17.19■□□□□ 0.34
SS18-214ENST00000580003 HS6ST3Q8IZP7 471 aa17.18■□□□□ 0.34
SS18-214ENST00000580003 ATMINO43313 823 aaPredicted RBP17.14■□□□□ 0.33
SS18-214ENST00000580003 GOLGA2Q08379 1002 aa17.14■□□□□ 0.33
SS18-214ENST00000580003 ASTLQ6HA08 431 aaPredicted RBP17.14■□□□□ 0.33
SS18-214ENST00000580003 CABP2Q9NPB3 220 aa17.12■□□□□ 0.33
SS18-214ENST00000580003 ATN1P54259 1190 aaPredicted RBP17.11■□□□□ 0.33
SS18-214ENST00000580003 TRIM35Q9UPQ4 493 aa17.1■□□□□ 0.33
SS18-214ENST00000580003 POTEIP0CG38 1075 aa17.04■□□□□ 0.32
SS18-214ENST00000580003 MKRN3Q13064 507 aaKnown RBP17.04■□□□□ 0.32
SS18-214ENST00000580003 EFCAB3Q8N7B9 438 aa17■□□□□ 0.31
SS18-214ENST00000580003 BBXQ8WY36 941 aaPredicted RBP17■□□□□ 0.31
SS18-214ENST00000580003 DNAJC5Q9H3Z4 198 aa16.99■□□□□ 0.31
SS18-214ENST00000580003 PELP1Q8IZL8 1130 aaKnown RBP16.98■□□□□ 0.31
SS18-214ENST00000580003 SLC39A7Q92504 469 aa16.96■□□□□ 0.31
SS18-214ENST00000580003 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.96■□□□□ 0.31
SS18-214ENST00000580003 SOX12O15370 315 aa16.95■□□□□ 0.3
SS18-214ENST00000580003 IER5LQ5T953 404 aa16.95■□□□□ 0.3
SS18-214ENST00000580003 C7P10643 843 aa16.91■□□□□ 0.3
SS18-214ENST00000580003 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.89■□□□□ 0.29
SS18-214ENST00000580003 NKX1-1Q15270 411 aaPredicted RBP16.88■□□□□ 0.29
SS18-214ENST00000580003 SEC24BO95487 1268 aa16.87■□□□□ 0.29
SS18-214ENST00000580003 NLRP6P59044 892 aa16.87■□□□□ 0.29
SS18-214ENST00000580003 METRNQ9UJH8 293 aa16.87■□□□□ 0.29
SS18-214ENST00000580003 RYDENQ9NUL5 291 aaKnown RBP16.86■□□□□ 0.29
SS18-214ENST00000580003 PHF8Q9UPP1 1060 aa16.86■□□□□ 0.29
SS18-214ENST00000580003 MFRPQ9BY79 579 aa16.85■□□□□ 0.29
SS18-214ENST00000580003 PLCG2P16885 1265 aa16.84■□□□□ 0.29
SS18-214ENST00000580003 IRX5P78411 483 aaPredicted RBP16.83■□□□□ 0.28
SS18-214ENST00000580003 OCEL1Q9H607 264 aa16.83■□□□□ 0.28
SS18-214ENST00000580003 SPRYD3Q8NCJ5 442 aa16.79■□□□□ 0.28
SS18-214ENST00000580003 FBXO22Q8NEZ5 403 aa16.78■□□□□ 0.28
SS18-214ENST00000580003 PAXIP1Q6ZW49 1069 aaPredicted RBP16.77■□□□□ 0.28
SS18-214ENST00000580003 ILDR1Q86SU0 546 aaPredicted RBP16.77■□□□□ 0.28
SS18-214ENST00000580003 CFAP44Q96MT7 982 aa16.76■□□□□ 0.27
SS18-214ENST00000580003 COLQQ9Y215 455 aaPredicted RBP16.76■□□□□ 0.27
SS18-214ENST00000580003 GTPBP6O43824 516 aaPredicted RBP16.75■□□□□ 0.27
SS18-214ENST00000580003 PDCD7Q8N8D1 485 aaKnown RBP16.74■□□□□ 0.27
SS18-214ENST00000580003 MS4A4AQ96JQ5 239 aa16.72■□□□□ 0.27
SS18-214ENST00000580003 POTEFA5A3E0 1075 aa16.71■□□□□ 0.27
SS18-214ENST00000580003 PLCB2Q00722 1185 aa16.66■□□□□ 0.26
SS18-214ENST00000580003 DPY19L2Q6NUT2 758 aa16.66■□□□□ 0.26
SS18-214ENST00000580003 G3V3G9 751 aa16.65■□□□□ 0.26
SS18-214ENST00000580003 L3MBTL3Q96JM7 780 aaPredicted RBP16.65■□□□□ 0.26
SS18-214ENST00000580003 PPP1R37O75864 691 aa16.61■□□□□ 0.25
SS18-214ENST00000580003 BOLA1Q9Y3E2 137 aa16.59■□□□□ 0.25
SS18-214ENST00000580003 MICALL2Q8IY33 904 aa16.52■□□□□ 0.24
SS18-214ENST00000580003 POTEB2H3BUK9 544 aa16.5■□□□□ 0.23
SS18-214ENST00000580003 TMEM121BQ9BXQ6 578 aaPredicted RBP16.48■□□□□ 0.23
SS18-214ENST00000580003 C3orf67Q6ZVT6 689 aa16.47■□□□□ 0.23
SS18-214ENST00000580003 HAP1P54257 671 aaPredicted RBP16.46■□□□□ 0.23
SS18-214ENST00000580003 LHX8Q68G74 356 aa16.46■□□□□ 0.23
SS18-214ENST00000580003 MAMSTRQ6ZN01 415 aa16.46■□□□□ 0.23
SS18-214ENST00000580003 SCUBE2Q9NQ36 999 aa16.43■□□□□ 0.22
SS18-214ENST00000580003 POTEJP0CG39 1038 aa16.42■□□□□ 0.22
SS18-214ENST00000580003 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.42■□□□□ 0.22
SS18-214ENST00000580003 TSHZ2Q9NRE2 1034 aa16.41■□□□□ 0.22
SS18-214ENST00000580003 CADPS2Q86UW7 1296 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms