RNA–Protein interactions for RNA: ENST00000578698.1

PTPRM-209, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-209ENST00000578698 ATMINO43313 823 aaPredicted RBP9.27□□□□□ -0.93
PTPRM-209ENST00000578698 SLC39A7Q92504 469 aa9.27□□□□□ -0.93
PTPRM-209ENST00000578698 POTEMA6NI47 508 aa9.25□□□□□ -0.93
PTPRM-209ENST00000578698 C7P10643 843 aa9.24□□□□□ -0.93
PTPRM-209ENST00000578698 PLEKHG5O94827 1062 aa9.23□□□□□ -0.93
PTPRM-209ENST00000578698 PROM2Q8N271 834 aa9.22□□□□□ -0.93
PTPRM-209ENST00000578698 CCDC61Q9Y6R9 512 aa9.22□□□□□ -0.93
PTPRM-209ENST00000578698 POTEGQ6S5H5 508 aa9.21□□□□□ -0.94
PTPRM-209ENST00000578698 ATN1P54259 1190 aaPredicted RBP9.2□□□□□ -0.94
PTPRM-209ENST00000578698 MAMSTRQ6ZN01 415 aa9.19□□□□□ -0.94
PTPRM-209ENST00000578698 MIER1Q8N108 512 aa9.19□□□□□ -0.94
PTPRM-209ENST00000578698 POTEJP0CG39 1038 aa9.17□□□□□ -0.94
PTPRM-209ENST00000578698 KIF12Q96FN5 646 aa9.17□□□□□ -0.94
PTPRM-209ENST00000578698 SCUBE2Q9NQ36 999 aa9.16□□□□□ -0.94
PTPRM-209ENST00000578698 MAP3K13O43283 966 aa9.14□□□□□ -0.95
PTPRM-209ENST00000578698 BMP2KQ9NSY1 1161 aaPredicted RBP9.14□□□□□ -0.95
PTPRM-209ENST00000578698 TRPC6Q9Y210 931 aa9.14□□□□□ -0.95
PTPRM-209ENST00000578698 RASEFQ8IZ41 740 aa9.13□□□□□ -0.95
PTPRM-209ENST00000578698 PLCD3Q8N3E9 789 aa9.11□□□□□ -0.95
PTPRM-209ENST00000578698 FAM163AQ96GL9 167 aaPredicted RBP9.11□□□□□ -0.95
PTPRM-209ENST00000578698 TIE1P35590 1138 aa9.1□□□□□ -0.95
PTPRM-209ENST00000578698 SEC24BO95487 1268 aa9.08□□□□□ -0.96
PTPRM-209ENST00000578698 POTEFA5A3E0 1075 aa9.07□□□□□ -0.96
PTPRM-209ENST00000578698 PCDH10Q9P2E7 1040 aa9.06□□□□□ -0.96
PTPRM-209ENST00000578698 TTLL13PA6NNM8 815 aa9.05□□□□□ -0.96
PTPRM-209ENST00000578698 PCDHB13Q9Y5F0 798 aa9.04□□□□□ -0.96
PTPRM-209ENST00000578698 LCE2DQ5TA82 110 aaPredicted RBP9.03□□□□□ -0.96
PTPRM-209ENST00000578698 ZBTB47Q9UFB7 747 aaPredicted RBP9.02□□□□□ -0.97
PTPRM-209ENST00000578698 TRIM35Q9UPQ4 493 aa9.02□□□□□ -0.97
PTPRM-209ENST00000578698 COLQQ9Y215 455 aaPredicted RBP9.02□□□□□ -0.97
PTPRM-209ENST00000578698 SGIP1Q9BQI5 828 aa8.98□□□□□ -0.97
PTPRM-209ENST00000578698 FAM212AQ96EL1 285 aa8.97□□□□□ -0.97
PTPRM-209ENST00000578698 NUBP1P53384 320 aa8.96□□□□□ -0.98
PTPRM-209ENST00000578698 IER5LQ5T953 404 aa8.96□□□□□ -0.98
PTPRM-209ENST00000578698 IFNL1Q8IU54 200 aa8.96□□□□□ -0.98
PTPRM-209ENST00000578698 TMEM106CQ9BVX2 250 aa8.94□□□□□ -0.98
PTPRM-209ENST00000578698 PLCG2P16885 1265 aa8.92□□□□□ -0.98
PTPRM-209ENST00000578698 SLAIN1Q8ND83 568 aa8.92□□□□□ -0.98
PTPRM-209ENST00000578698 FKBP8Q14318 412 aa8.9□□□□□ -0.98
PTPRM-209ENST00000578698 CDAN1Q8IWY9 1227 aa8.89□□□□□ -0.99
PTPRM-209ENST00000578698 DCAF8Q5TAQ9 597 aa8.87□□□□□ -0.99
PTPRM-209ENST00000578698 PYGBP11216 843 aa8.85□□□□□ -0.99
PTPRM-209ENST00000578698 ST18O60284 1047 aa8.84□□□□□ -0.99
PTPRM-209ENST00000578698 IRX5P78411 483 aaPredicted RBP8.83□□□□□ -1
PTPRM-209ENST00000578698 OCEL1Q9H607 264 aa8.8□□□□□ -1
PTPRM-209ENST00000578698 PCDHB8Q9UN66 801 aa8.8□□□□□ -1
PTPRM-209ENST00000578698 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.78□□□□□ -1
PTPRM-209ENST00000578698 FBXO3Q9UK99 471 aa8.77□□□□□ -1.01
PTPRM-209ENST00000578698 GOLGA2Q08379 1002 aa8.75□□□□□ -1.01
PTPRM-209ENST00000578698 KLHL34Q8N239 644 aa8.75□□□□□ -1.01
PTPRM-209ENST00000578698 SNPHO15079 494 aa8.74□□□□□ -1.01
PTPRM-209ENST00000578698 TMEM121BQ9BXQ6 578 aaPredicted RBP8.72□□□□□ -1.01
PTPRM-209ENST00000578698 MKRN3Q13064 507 aaKnown RBP8.71□□□□□ -1.02
PTPRM-209ENST00000578698 C3orf67Q6ZVT6 689 aa8.71□□□□□ -1.02
PTPRM-209ENST00000578698 MARVELD3Q96A59 401 aa8.71□□□□□ -1.02
PTPRM-209ENST00000578698 GSE1Q14687 1217 aa8.7□□□□□ -1.02
PTPRM-209ENST00000578698 ZNF467Q7Z7K2 595 aaPredicted RBP8.7□□□□□ -1.02
PTPRM-209ENST00000578698 VASPP50552 380 aaPredicted RBP8.67□□□□□ -1.02
PTPRM-209ENST00000578698 PDCD7Q8N8D1 485 aaKnown RBP8.67□□□□□ -1.02
PTPRM-209ENST00000578698 L3MBTL3Q96JM7 780 aaPredicted RBP8.66□□□□□ -1.02
PTPRM-209ENST00000578698 MMRN1Q13201 1228 aa8.65□□□□□ -1.02
PTPRM-209ENST00000578698 SPNS2Q8IVW8 549 aa8.65□□□□□ -1.02
PTPRM-209ENST00000578698 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.65□□□□□ -1.027e-9■■□□□ 13.2
PTPRM-209ENST00000578698 PSEN1P49768 467 aa8.64□□□□□ -1.03
PTPRM-209ENST00000578698 EMP3P54852 163 aa8.64□□□□□ -1.03
PTPRM-209ENST00000578698 CHRM1P11229 460 aaPredicted RBP8.59□□□□□ -1.03
PTPRM-209ENST00000578698 G3V3G9 751 aa8.58□□□□□ -1.04
PTPRM-209ENST00000578698 FAM205CA6NFA0 338 aa8.57□□□□□ -1.04
PTPRM-209ENST00000578698 PDAP1Q13442 181 aaKnown RBP8.57□□□□□ -1.04
PTPRM-209ENST00000578698 HS3ST6Q96QI5 342 aa8.56□□□□□ -1.04
PTPRM-209ENST00000578698 CABP2Q9NPB3 220 aa8.56□□□□□ -1.04
PTPRM-209ENST00000578698 CIZ1Q9ULV3 898 aaPredicted RBP8.56□□□□□ -1.04
PTPRM-209ENST00000578698 DPY19L2Q6NUT2 758 aa8.54□□□□□ -1.04
PTPRM-209ENST00000578698 SPOCK2Q92563 424 aa8.51□□□□□ -1.05
PTPRM-209ENST00000578698 BOLA1Q9Y3E2 137 aa8.51□□□□□ -1.05
PTPRM-209ENST00000578698 POTEB3A0JP26 581 aa8.5□□□□□ -1.05
PTPRM-209ENST00000578698 POTEBQ6S5H4 581 aa8.5□□□□□ -1.05
PTPRM-209ENST00000578698 KRTAP3-3Q9BYR6 98 aa8.5□□□□□ -1.05
PTPRM-209ENST00000578698 KRTAP3-2Q9BYR7 98 aa8.5□□□□□ -1.05
PTPRM-209ENST00000578698 ILDR1Q86SU0 546 aaPredicted RBP8.49□□□□□ -1.05
PTPRM-209ENST00000578698 ZNF710Q8N1W2 664 aa8.49□□□□□ -1.05
PTPRM-209ENST00000578698 IFNLR1Q8IU57 520 aaPredicted RBP8.47□□□□□ -1.05
PTPRM-209ENST00000578698 HOXB3P14651 431 aaPredicted RBP8.44□□□□□ -1.06
PTPRM-209ENST00000578698 DOK7Q18PE1 504 aa8.43□□□□□ -1.06
PTPRM-209ENST00000578698 ERBB3P21860 1342 aa8.43□□□□□ -1.06
PTPRM-209ENST00000578698 HOXB1P14653 301 aaPredicted RBP8.41□□□□□ -1.06
PTPRM-209ENST00000578698 EFCAB3Q8N7B9 438 aa8.41□□□□□ -1.06
PTPRM-209ENST00000578698 RIMBP2O15034 1052 aa8.4□□□□□ -1.06
PTPRM-209ENST00000578698 VARS2Q5ST30 1063 aaKnown RBP8.37□□□□□ -1.07
PTPRM-209ENST00000578698 TRIM41Q8WV44 630 aa8.36□□□□□ -1.07
PTPRM-209ENST00000578698 AMER1Q5JTC6 1135 aaPredicted RBP8.35□□□□□ -1.07
PTPRM-209ENST00000578698 MICALL2Q8IY33 904 aa8.34□□□□□ -1.07
PTPRM-209ENST00000578698 RNF166Q96A37 237 aaPredicted RBP8.34□□□□□ -1.07
PTPRM-209ENST00000578698 RTN4Q9NQC3 1192 aaKnown RBP8.33□□□□□ -1.08
PTPRM-209ENST00000578698 TMEM92Q6UXU6 159 aa8.31□□□□□ -1.08
PTPRM-209ENST00000578698 SLC24A1O60721 1099 aa8.3□□□□□ -1.08
PTPRM-209ENST00000578698 ZSWIM6Q9HCJ5 1215 aa8.29□□□□□ -1.08
PTPRM-209ENST00000578698 MYT1LQ9UL68 1186 aa8.29□□□□□ -1.08
PTPRM-209ENST00000578698 RIOK3O14730 519 aaKnown RBP8.28□□□□□ -1.08
PTPRM-209ENST00000578698 SOX12O15370 315 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms