RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 SCRIBQ14160 1630 aa4.14□□□□□ -1.75
SMCHD1-203ENST00000577880 TSPY4P0CV99 314 aa4.13□□□□□ -1.75
SMCHD1-203ENST00000577880 TSPY10P0CW01 314 aa4.13□□□□□ -1.75
SMCHD1-203ENST00000577880 MYT1Q01538 1121 aa4.13□□□□□ -1.75
SMCHD1-203ENST00000577880 LTBP4Q8N2S1 1624 aa4.13□□□□□ -1.75
SMCHD1-203ENST00000577880 DAXXQ9UER7 740 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-203ENST00000577880 PLEKHD1A6NEE1 506 aa4.11□□□□□ -1.75
SMCHD1-203ENST00000577880 CENPBP07199 599 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-203ENST00000577880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.11□□□□□ -1.754e-9■□□□□ 8.9
SMCHD1-203ENST00000577880 KDM4FA0A1W2PPD8 638 aa4.1□□□□□ -1.75
SMCHD1-203ENST00000577880 PLEKHG5O94827 1062 aa4.1□□□□□ -1.75
SMCHD1-203ENST00000577880 PDS5BQ9NTI5 1447 aa4.1□□□□□ -1.75
SMCHD1-203ENST00000577880 CLSPNQ9HAW4 1339 aa4.09□□□□□ -1.75
SMCHD1-203ENST00000577880 SMARCA4P51532 1647 aa4.09□□□□□ -1.75
SMCHD1-203ENST00000577880 ZBTB7CA1YPR0 619 aa4.09□□□□□ -1.75
SMCHD1-203ENST00000577880 MRC2Q9UBG0 1479 aa4.09□□□□□ -1.75
SMCHD1-203ENST00000577880 SENP3Q9H4L4 574 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-203ENST00000577880 HDGFP51858 240 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-203ENST00000577880 DCAF8L1A6NGE4 600 aa4.08□□□□□ -1.76
SMCHD1-203ENST00000577880 NEUROD1Q13562 356 aa4.07□□□□□ -1.76
SMCHD1-203ENST00000577880 LMOD2Q6P5Q4 547 aa4.07□□□□□ -1.76
SMCHD1-203ENST00000577880 CSRNP3Q8WYN3 585 aa4.07□□□□□ -1.76
SMCHD1-203ENST00000577880 ADGRL1O94910 1474 aa4.07□□□□□ -1.76
SMCHD1-203ENST00000577880 MLECQ14165 292 aa4.07□□□□□ -1.76
SMCHD1-203ENST00000577880 CERKQ8TCT0 537 aa4.07□□□□□ -1.76
SMCHD1-203ENST00000577880 NPHP1O15259 732 aa4.06□□□□□ -1.76
SMCHD1-203ENST00000577880 HMGXB3Q12766 1538 aa4.05□□□□□ -1.76
SMCHD1-203ENST00000577880 WDR97A6NE52 1622 aa4.05□□□□□ -1.76
SMCHD1-203ENST00000577880 CANXP27824 592 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-203ENST00000577880 BCL11AQ9H165 835 aa4.04□□□□□ -1.76
SMCHD1-203ENST00000577880 NCAPD3P42695 1498 aa4.04□□□□□ -1.76
SMCHD1-203ENST00000577880 ARXQ96QS3 562 aa4.03□□□□□ -1.76
SMCHD1-203ENST00000577880 CYB5RLQ6IPT4 315 aa4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 PHF23Q9BUL5 403 aaPredicted RBP4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 MED1Q15648 1581 aaPredicted RBP4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 CEP164Q9UPV0 1460 aa4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 LOC105371045A0A1W2PR82 267 aa4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 TRIM26Q12899 539 aaPredicted RBP4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 YTHDC1Q96MU7 727 aaKnown RBP4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 CCDC9Q9Y3X0 531 aaKnown RBP4.02□□□□□ -1.77
SMCHD1-203ENST00000577880 MTUS2Q5JR59 1369 aa4.01□□□□□ -1.77
SMCHD1-203ENST00000577880 KIF13AQ9H1H9 1805 aa4.01□□□□□ -1.77
SMCHD1-203ENST00000577880 SMARCA2P51531 1590 aa4.01□□□□□ -1.77
SMCHD1-203ENST00000577880 NESP48681 1621 aa4□□□□□ -1.77
SMCHD1-203ENST00000577880 CHIC2Q9UKJ5 165 aa4□□□□□ -1.77
SMCHD1-203ENST00000577880 POGKQ9P215 609 aa4□□□□□ -1.77
SMCHD1-203ENST00000577880 CFDP1Q9UEE9 299 aaPredicted RBP4□□□□□ -1.77
SMCHD1-203ENST00000577880 TMX4Q9H1E5 349 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 EIF4G2P78344 907 aaKnown RBP eCLIP3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 MEX3CQ5U5Q3 659 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 EID1Q9Y6B2 187 aa3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 LRP5O75197 1615 aa3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 PCF11O94913 1555 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 KDM2AQ9Y2K7 1162 aa3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 DMRT2Q9Y5R5 561 aa3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 ACIN1Q9UKV3 1341 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-203ENST00000577880 ZNF316A6NFI3 1004 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-203ENST00000577880 ANP32CO43423 234 aa3.97□□□□□ -1.77
SMCHD1-203ENST00000577880 GGT6Q6P531 493 aa3.97□□□□□ -1.77
SMCHD1-203ENST00000577880 TMC1Q8TDI8 760 aa3.97□□□□□ -1.77
SMCHD1-203ENST00000577880 KANK1Q14678 1352 aa3.97□□□□□ -1.77
SMCHD1-203ENST00000577880 CARMIL2Q6F5E8 1435 aa3.97□□□□□ -1.77
SMCHD1-203ENST00000577880 PTPRTO14522 1441 aa3.96□□□□□ -1.78
SMCHD1-203ENST00000577880 MAPKBP1O60336 1514 aa3.96□□□□□ -1.78
SMCHD1-203ENST00000577880 CLASP1Q7Z460 1538 aa3.95□□□□□ -1.78
SMCHD1-203ENST00000577880 CSB-PGBD3P0DP91 1061 aa3.95□□□□□ -1.78
SMCHD1-203ENST00000577880 EFCAB2Q5VUJ9 269 aa3.95□□□□□ -1.78
SMCHD1-203ENST00000577880 TONSLQ96HA7 1378 aa3.95□□□□□ -1.78
SMCHD1-203ENST00000577880 SNAPC4Q5SXM2 1469 aa3.95□□□□□ -1.78
SMCHD1-203ENST00000577880 KIF21AQ7Z4S6 1674 aa3.94□□□□□ -1.78
SMCHD1-203ENST00000577880 RGL3Q3MIN7 710 aa3.94□□□□□ -1.78
SMCHD1-203ENST00000577880 CDCA8Q53HL2 280 aa3.94□□□□□ -1.78
SMCHD1-203ENST00000577880 PPM1GO15355 546 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 SF3B2Q13435 895 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 KIF27Q86VH2 1401 aa3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 SYNJ1O43426 1573 aa3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 CFAP53Q96M91 514 aa3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 WDR43Q15061 677 aaKnown RBP eCLIP3.93□□□□□ -1.784e-6■□□□□ 9.3
SMCHD1-203ENST00000577880 GOLGA2Q08379 1002 aa3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 FAM69CQ0P6D2 419 aa3.93□□□□□ -1.78
SMCHD1-203ENST00000577880 PAK3O75914 559 aaPredicted RBP3.92□□□□□ -1.78
SMCHD1-203ENST00000577880 KIAA0586Q9BVV6 1533 aa3.92□□□□□ -1.78
SMCHD1-203ENST00000577880 CDK11BP21127 795 aaKnown RBP3.92□□□□□ -1.78
SMCHD1-203ENST00000577880 ABCC10Q5T3U5 1492 aa3.92□□□□□ -1.78
SMCHD1-203ENST00000577880 CLIP1P30622 1438 aa3.92□□□□□ -1.78
SMCHD1-203ENST00000577880 RRP7BPQ9NSQ0 103 aa3.92□□□□□ -1.78
SMCHD1-203ENST00000577880 WRNQ14191 1432 aaPredicted RBP eCLIP3.91□□□□□ -1.781e-10■■■■■ 128
SMCHD1-203ENST00000577880 MSH5O43196 834 aa3.91□□□□□ -1.78
SMCHD1-203ENST00000577880 MYH16Q9H6N6 1097 aa3.91□□□□□ -1.78
SMCHD1-203ENST00000577880 CCNB3Q8WWL7 1395 aa3.91□□□□□ -1.78
SMCHD1-203ENST00000577880 G3V3G9 751 aa3.91□□□□□ -1.78
SMCHD1-203ENST00000577880 DCAF8Q5TAQ9 597 aa3.91□□□□□ -1.78
SMCHD1-203ENST00000577880 NUDCQ9Y266 331 aa3.9□□□□□ -1.78
SMCHD1-203ENST00000577880 CFAP43Q8NDM7 1665 aa3.9□□□□□ -1.79
SMCHD1-203ENST00000577880 KLHL34Q8N239 644 aa3.9□□□□□ -1.79
SMCHD1-203ENST00000577880 IFT140Q96RY7 1462 aa3.9□□□□□ -1.79
SMCHD1-203ENST00000577880 SOX12O15370 315 aa3.9□□□□□ -1.79
SMCHD1-203ENST00000577880 EVA1CP58658 441 aa3.89□□□□□ -1.79
SMCHD1-203ENST00000577880 SRPK2P78362 688 aaKnown RBP3.89□□□□□ -1.79
SMCHD1-203ENST00000577880 ZCCHC6Q5VYS8 1495 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms